C2-00021, C2-00021 (genetic_marker) Gossypium hirsutum

Marker Overview
NameC2-00021
AliasC2-021
Genbank IDGQ393036
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 20
Source SequenceMONCS0017
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1C2-00021_F: TAGCTACACTATGGCAATTA
Primer 2C2-00021_R: TCACCCGTGCTTATTATCGT
PolymorphismP_ C2-00021
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393036
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D09chromosomeD09:22617417..22617586 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
A09chromosomeA09:35815342..35815513 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018223.1chromosomeCM018223.1:20490381..20490546 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_09chromosomeD5_09:15426036..15426221 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1
D10_09chromosomeD10_09:27620123..27620303 -Gossypium turneri (D10) genome NSF_v1_a2
scaffold1345.1supercontigscaffold1345.1:157736..157907 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
Dt_chr6chromosomeDt_chr6:31906700..31906869 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D09chromosomeD09:21552957..21553126 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
A09chromosomeA09:32969584..32969755 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D09chromosomeGhir_D09:22708507..22708676 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_A09chromosomeGhir_A09:37899689..37899858 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D09chromosomeD09:22570740..22570909 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A09chromosomeA09:40094952..40095123 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D09chromosomeD09:22117247..22117416 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A09chromosomeA09:39367140..39367311 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D09chromosomeD09:20566380..20566549 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
A09chromosomeA09:36729873..36730042 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Dt09chromosomeDt09:21876709..21876874 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold2033supercontigscaffold2033:526763..526928 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold15998supercontigscaffold15998:5406..5561 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold15998supercontigscaffold15998:10957..11112 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_D09chromosomeGbar_D09:21101639..21101804 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_A09chromosomeGbar_A09:36023229..36023384 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D09chromosomeD09:23965483..23965648 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017631.1chromosomeCM017631.1:21535411..21535570 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017709.1chromosomeCM017709.1:21742691..21742854 +Gossypium darwinii (AD5) genome HGS_v1.1
D09chromosomeD09:23471761..23471930 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
A09chromosomeA09:40312783..40312954 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr09chromosomeChr09:20659295..20659474 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
Chr06chromosomeChr06:20719813..20719974 +Gossypium thurberi (D1-5) genome CRI_v1
chr06chromosomechr06:19817334..19817518 -Gossypium armourianum (D2-1) genome ISU_v1
Chr06chromosomeChr06:21497015..21497194 +Gossypium davidsonii (D3d-8) genome CRI_v1
Chr06chromosomeChr06:16679923..16680183 -Gossypium lobatum (D7) genome ISU_v1
Germplasm
Stock NameType
Deltapine 20accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0017MONCS0017Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1DH962 X Ji Mian 5, F2 (2015)AD_ch09_At.09N/A15.12MON_C2-0021View
2DH962 X Ji Mian 5, F2 (2015)AD_ch09_At.09N/A15.12MON_C2-0021View
3DH962 x Ji Mian 5, RIL (2015)AD_ch09_At.09N/A0MON_C2-0021View
4TM-1 x 3-79, RIL (2014)AD_ch23_Dt.09N/A37C2-0021View
5TM-1 x 3-79, RIL (2012.v3)AD_ch23_Dt.09N/A36.99C2-0021View
6MGG-293-793, MAGIC (2018)AD_ch22_Dt.04N/A128.9C2-0021View
Sequence
>C2-00021 ID=C2-00021; Name=C2-00021; organism=Gossypium hirsutum; type=genetic_marker; length=170bp
TAGCTACACTATGGCAATTAATGGAGTCTGCTAGGACATTAAACATAAGA
TACTTGTGTAAGACCATAACTCGACTATGGAAATATGGAGAGAGAGAGAG
AGTATGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGAGGGAGAGTCTGCC
ACGATAATAAGCACGGGTGA