BNL3800, BNL3800 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL3800
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3800_orig
Source Typegenomic
Repeat Motif(GT)3+A+T+(TG)3+(TA)2+(TG)21
PCR ConditionAnnealing temperature: 55
Primer 1BNL3800_F: GCCATTGATGGAAGGTCAGT
Primer 2BNL3800_R: CATCCTCGGAATTTTCCAAA
PolymorphismP_ BNL3800
CommentPrimer data obtained in 2000
Germplasm
Stock NameType
Deltapine 90obsolete_cultivar
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
BNL3800_FBNL3800_FGossypium hirsutumprimer
BNL3800_RBNL3800_RGossypium hirsutumprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
fiber elongationqFEL.YCY7-4WC_chr08-3.bb08Gossypium hirsutumQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3800-198BNL3800-198Gossypium hirsutummarker_locus
BNL3800BNL3800Gossypium hirsutummarker_locus
BNL3800-200BNL3800-200Gossypium hirsutummarker_locus
BNL3800/195y(C8)BNL3800/195y(C8)Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3800_origBNL3800_origGossypium hirsutumsequence_feature


Sequence
>BNL3800 ID=BNL3800|Name=BNL3800|organism=Gossypium hirsutum|type=genetic_marker|length=193bp
GCCATTGATGGAAGGTCAGTGTGTATTGTGTGTATATGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGAAAAAGTATTTGTCTGTCGACT
ACGTAGGTGTTTGATCCAAAAAGAAAAAAAAACTAATTTCTTTCTTTNAC
TTTTTCTTTCTTTGCTTTTTTTTTTTGGAAAATTCCGAGGATG
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocus
1HS-46 x MARCABUCAG8US-1-88, RIL (2009)HS-46 x MARCABUCAG8US-1-88, RIL (2009).HSM-RIL_chr08N/AAD_chr.081BNL3800-198
2Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr08N/AAD_chr.08110BNL3800
3AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr08N/AAD_chr.08188BNL3800
4Yumian-1 x T586, F2:3 (2005)Yumian-1 x T586, F2:3 (2005).YT-F2:3_A02/D03N/AAD_chr.080BNL3800
5Yumian-1 x T586, F2:3 (2005)Yumian-1 x T586, F2:3 (2005).YT-F2:3_A02/D03N/AAD_chr.240BNL3800
6Yumian-1 x T586, F2:7 (2008)Yumian-1 x T586, RIL (2008).YT-RIL_chr08N/AAD_chr.086.2BNL3800
7Yumian-1 x T586, RIL (2006)YT-RIL_chr08-3N/AAD_chr.0826.7BNL3800
8(YM-1 x CCRI-35) x (YM-1 x 7235), 4WC (2012)YCY7-4WC_chr08-3N/AAD_chr.0816BNL3800
9Yumian-1 x T586, F2:3 (2005.v0)YT-F2:3_chr08N/AAD_chr.080BNL3800
10Yumian-1 x T586, F2:3 (2005.v0)YT-F2:3_chr24N/AAD_chr.240BNL3800
11Yumian-1 x T586, RIL (2015)YT-RIL.15_chr08N/AAD_chr.0871.6BNL3800
12Yumian-1 x 7235, RIL (2015)Y7-RIL_chr08N/AAD_chr.0870.3BNL3800
13TM-1 x Hai-7124, BC1 (2007)TM-1 x Hai-7124, BC1 (2007).TH-BC1_chr08N/AAD_chr.0843.2BNL3800-200
14TM-1 x Hai-7124, BC1 (2008)TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr08/A8N/AAD_chr.0882.59BNL3800-200
15Yumian-1 x T586, RIL (2009)YT-RIL_chr08-2N/AAD_chr.0821.7BNL3800/195y(C8)