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Marker Overview
| Name | BNL3800 |
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| Genbank ID | N/A |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Deltapine 90 |
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| Source Sequence | BNL3800_orig
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| Source Type | genomic |
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| Repeat Motif | (GT)3+A+T+(TG)3+(TA)2+(TG)21 |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | BNL3800_F: GCCATTGATGGAAGGTCAGT |
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| Primer 2 | BNL3800_R: CATCCTCGGAATTTTCCAAA |
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| Polymorphism | P_ BNL3800 |
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| Comment | Primer data obtained in 2000 |
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Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | HS-46 x MARCABUCAG8US-1-88, RIL (2009) | AD_ch08_At.08 | N/A | 1 | BNL3800-198 | View |
| 2 | AD-genome wide Reference Map (2009) | AD_ch08_At.08 | N/A | 188 | BNL3800 | View |
| 3 | Yumian-1 x T586, F2:7 (2008) | AD_ch08_At.08 | N/A | 6.2 | BNL3800 | View |
| 4 | Yumian-1 x T586, RIL (2006) | AD_ch08_At.08 | N/A | 26.7 | BNL3800 | View |
| 5 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch08_At.08 | N/A | 16 | BNL3800 | View |
| 6 | Yumian-1 x T586, F2:3 (2005.v0) | AD_ch08_At.08 | N/A | 0 | BNL3800 | View |
| 7 | Yumian-1 x T586, F2:3 (2005.v0) | AD_ch24_Dt.08 | N/A | 0 | BNL3800 | View |
| 8 | Yumian-1 x T586, RIL (2015) | AD_ch08_At.08 | N/A | 71.6 | BNL3800 | View |
| 9 | Yumian-1 x 7235, RIL (2015) | AD_ch08_At.08 | N/A | 70.3 | BNL3800 | View |
| 10 | Monsanto SSR Bin Map, (2009) | AD_ch08_At.08 | N/A | 101 | BNL3800 | View |
| 11 | TM-1 x Hai-7124, BC1 (2007) | AD_ch08_At.08 | N/A | 43.2 | BNL3800-200 | View |
| 12 | TM-1 x Hai-7124, BC1 (2008) | AD_ch08_At.08 | N/A | 82.59 | BNL3800-200 | View |
| 13 | TM-1 x Hai-7124, BC1 (2012) | AD_ch08_At.08 | N/A | 48.3 | BNL3800-200 | View |
| 14 | Yumian-1 x T586, RIL (2009) | AD_ch08_At.08 | N/A | 21.7 | BNL3800/195y(C8) | View |
Sequence
>BNL3800 ID=BNL3800; Name=BNL3800; organism=Gossypium hirsutum; type=genetic_marker; length=193bp
GCCATTGATGGAAGGTCAGTGTGTATTGTGTGTATATGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGAAAAAGTATTTGTCTGTCGACT
ACGTAGGTGTTTGATCCAAAAAGAAAAAAAAACTAATTTCTTTCTTTNAC
TTTTTCTTTCTTTGCTTTTTTTTTTTGGAAAATTCCGAGGATG
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