BNL3790, BNL3790 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL3790
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3790_orig
Source Typegenomic
Repeat Motif(AT)11+(GT)16
PCR ConditionAnnealing temperature: 55
Primer 1BNL3790_F: TTCAGAATGTGTTAGACTAGCTGG
Primer 2BNL3790_R: AAAGAAGGAAGTGTGGGCAG
PolymorphismP_ BNL3790
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
A10chromosomeA10:97218273..97218434 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018211.1chromosomeCM018211.1:94842455..94842608 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:20224445..20224590 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
At_chr11chromosomeAt_chr11:8311902..8312063 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A10chromosomeA10:86689893..86690054 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A10chromosomeGhir_A10:100535416..100535579 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A10chromosomeA10:101497990..101498151 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A10chromosomeA10:100663343..100663500 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A10chromosomeA10:95746042..95746201 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
At10chromosomeAt10:91435478..91435631 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold10663supercontigscaffold10663:188464..188617 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_A10chromosomeGbar_A10:95159750..95159903 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A10chromosomeA10:96796409..96796562 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017619.1chromosomeCM017619.1:96476898..96477029 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017645.1chromosomeCM017645.1:104043886..104044027 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017697.1chromosomeCM017697.1:98211806..98211959 +Gossypium darwinii (AD5) genome HGS_v1.1
A10chromosomeA10:103711064..103711223 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr10chromosomeChr10:110376439..110376600 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr10chromosomeChr10:104626295..104626442 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3790_origBNL3790_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch10_At.10N/A52.8BNL3790View
2Emian-22 x 3-79, BC1 (2011)AD_ch10_At.10N/A69.28BNL3790View
3Handan-208 x Pima-90, F2:3 (2007)AD_ch10_At.10N/A149.1BNL3790View
4Xinluzao-1 x Hai-7124, F2 (2008)AD_ch10_At.10N/A92.3BNL3790View
5AD-genome wide Reference Map (2009)AD_ch10_At.10N/A197BNL3790View
6SG 747 x Giza 75, BIL (2013)AD_ch10_At.10N/A42.3BNL3790View
7Monsanto SSR Bin Map, (2009)AD_ch10_At.10N/A41BNL3790View
8HS-46 x MARCABUCAG8US-1-88, RIL (2009)AD_ch10_At.10N/A18BNL3790-163View
9PD 94042 x (AD)4-08, F2 (2016)AD_ch10_At.10N/A107.2BNL3790View
Sequence
>BNL3790 ID=BNL3790; Name=BNL3790; organism=Gossypium hirsutum; type=genetic_marker; length=162bp
TTCAGAATGTGTTAGACTAGCTGGTAGATCAAATTGTAATAAATCACCAA
AATTGGATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGGCTTAGCCATGAGAATTAATAGATAATTAAACTGCCCAC
ACTTCCTTCTTT