BNL2742, BNL2742 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL2742
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL2742_orig
Source Typegenomic
Repeat Motif(AG)11
PCR ConditionAnnealing temperature: 55
Primer 1BNL2742_F: GACGCCATCCTCAACATTTT
Primer 2BNL2742_R: CGTGATCCCAGAGGAGAAAA
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A12chromosomeA12:63775869..63776081 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018217.1chromosomeCM018217.1:30131701..30131913 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018203.1chromosomeCM018203.1:48713637..48713851 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
scaffold1459.1supercontigscaffold1459.1:156382..156594 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr3chromosomeDt_chr3:3448457..3448669 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold321_A02supercontigscaffold321_A02:157564..157776 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:51707667..51707879 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:49806979..49807191 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:50190577..50190789 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:49658334..49658546 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold1724supercontigscaffold1724:25540..25754 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4502supercontigscaffold4502:602548..602760 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D03chromosomeGbar_D03:28503816..28504028 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A02chromosomeGbar_A02:49117542..49117756 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D03chromosomeD03:31152651..31152863 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A02chromosomeA02:49825871..49826085 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:49021316..49021528 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017651.1chromosomeCM017651.1:33453329..33453539 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017637.1chromosomeCM017637.1:52498053..52498268 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017703.1chromosomeCM017703.1:30958085..30958297 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017689.1chromosomeCM017689.1:49410257..49410471 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:51150215..51150427 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:34778668..34778879 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:27988561..27988779 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr03chromosomeChr03:15590945..15591157 +Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL2742_origBNL2742_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch17_Dt.03N/A112BNL2742View
2Emian-22 x 3-79, BC1 (2011)AD_ch17_Dt.03N/A80.99BNL2742View
3Yumian-1 x 7235, RIL (2015)AD_ch17_Dt.03N/A38.7BNL2742View
4W10 x TM-1, F2:3 (2015)AD_ch02_At.02N/A117.1BNL2742View
Sequence
>BNL2742 ID=BNL2742; Name=BNL2742; organism=Gossypium hirsutum; type=genetic_marker; length=214bp
GACGCCATCCTCAACATTTTCACTGAGTTAGGGCTTGGATTTGGGAACTT
TGATTGGTTGTACGCAGATATATATATCTAGAGAGAGAGAGAGAGAGAGA
GCGCGCTTGGAGAGACGGCTATACGGGACGCGTGGGAGGGTGAAAACAGA
TTCTGGAGTTTCCTCTGTAAGATAGAACCAACACGCGTCAGAGTTTTTCT
CCTCTGGGATCACG