BNL2741, BNL2741 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL2741
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL2741_orig
Source Typegenomic
Repeat Motif(GA)15, (TC)15
PCR ConditionAnnealing temperature: 55
Primer 1BNL2741_F: TGTGGAGTTGTTTGTCTCGC
Primer 2BNL2741_R: GTCAACAGTCCTCTGCTGCA
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:51184704..51184926 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:48846619..48846901 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:19436958..19437169 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_11chromosomeD10_11:50900389..50900608 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr7chromosomeDt_chr7:40417552..40417774 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:46418512..46418734 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:51390433..51390655 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:50912823..50913045 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:51306173..51306395 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:48616896..48617118 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:48599602..48599866 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:51719171..51719401 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:50981324..50981570 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:52078646..52078874 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:48633161..48633437 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:51221275..51221497 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:17745213..17745425 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr07chromosomeChr07:48707372..48707600 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:34204599..34204815 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:32682330..32682552 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:48996185..48996401 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:29229432..29229650 -Gossypium aridum (D4) genome ISU_v1n/a
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL2741_origBNL2741_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Handan-208 x Pima-90, F2:3 (2007)AD_ch23_Dt.09N/A160.3BNL2741View
2AD-genome wide Reference Map (2009)AD_ch11_At.11N/A8BNL2741View
3AD-genome wide Reference Map (2009)AD_ch09_At.09N/A216BNL2741View
4TM-1 x 3-79, RIL (2006)AD_ch11_At.11N/A19BNL2741View
5Xinluzao-1 x Hai-7124, F2 (2008)AD_ch09_At.09N/A36.8BNL2741View
6TM-1 x 3-79, RIL (2012)AD_ch21_Dt.11N/A84.45BNL2741View
7TM-1 x 3-79, RIL (2014)AD_ch21_Dt.11N/A84.5BNL2741View
8Monsanto SSR Bin Map, (2009)AD_ch21_Dt.11N/A101BNL2741View
9TM-1 x Hai-7124, BC1 (2008)AD_ch11_At.11N/A78.07BNL2741-205View
10TM-1 x Hai-7124, BC1 (2012)AD_ch11_At.11N/A84.2BNL2741-205View
11TM-1 x 3-79, RIL (2012.v3)AD_ch21_Dt.11N/A84.45BNL2741View
Sequence
>BNL2741 ID=BNL2741; Name=BNL2741; organism=Gossypium hirsutum; type=genetic_marker; length=223bp
TGTGGAGTTGTTTGTCTCGCTTGTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTTTTGCGTTGTTGTTTCTGGTTAAGTGTTTATACAAAAGATATGTTT
CTGGTGAAGTTTATATACATAACAGAAAATGGCTAGGATTTGAAAGATGA
CAAAATAAATTAAAAAACAAACAAAATGAAAAACATAAAAACTTACACTG
CGATGCAGCAGAGGACTGTTGAC