BNL2733, BNL2733 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL2733
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL2733_orig
Source Typegenomic
Repeat Motif(AG)21
PCR ConditionAnnealing temperature: 55
Primer 1BNL2733_F: TCGAGGGTTTAGGGTTCCTG
Primer 2BNL2733_R: AATTGTGCAACACCTCCCTC
PolymorphismP_ BNL2733
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
A07chromosomeA07:76134349..76134454 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018208.1chromosomeCM018208.1:76781110..76781211 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:79315740..79315843 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
scaffold1639_A07supercontigscaffold1639_A07:246..351 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A07chromosomeGhir_A07:80904055..80904152 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A07chromosomeA07:80164767..80164872 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A07chromosomeA07:80704074..80704179 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A07chromosomeA07:76710024..76710129 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
scaffold7925supercontigscaffold7925:274001..274102 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold7925supercontigscaffold7925:271492..271825 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold13120supercontigscaffold13120:161005..161338 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_D07chromosomeGbar_D07:45468389..45468722 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_A07chromosomeGbar_A07:76465644..76465745 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A07chromosomeA07:78126727..78126828 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017616.1chromosomeCM017616.1:80290411..80290524 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017642.1chromosomeCM017642.1:82692187..82692290 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017694.1chromosomeCM017694.1:78077951..78078052 -Gossypium darwinii (AD5) genome HGS_v1.1
A07chromosomeA07:82241264..82241369 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr07chromosomeChr07:83478880..83478983 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr07chromosomeChr07:84054067..84054170 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr07chromosomeChr07:11550699..11550971 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
E07chromosomeE07:17949666..17949765 +Gossypium stocksii (E1) genome NSF_v1
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL2733_origBNL2733_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch07_At.07N/A70BNL2733View
2Emian-22 x 3-79, BC1 (2011)AD_ch07_At.07N/A89.52BNL2733View
3AD-genome wide Reference Map (2009)AD_ch16_Dt.07N/A87BNL2733View
4TM-1 x 3-79, RIL (2012)AD_ch07_At.07N/A88.97BNL2733View
5TM-1 x 3-79, RIL (2014)AD_ch07_At.07N/A49BNL2733View
6SG 747 x Giza 75, BIL (2013)AD_ch07_At.07N/A29.7BNL2733View
7Monsanto SSR Bin Map, (2009)AD_ch07_At.07N/A21BNL2733View
8Handan-208 x Pima-90, F2:3 (2007)AD_ch07_At.07N/A44.6BNL2733bView
9Handan-208 x Pima-90, F2:3 (2007)AD_ch16_Dt.07N/A74.2BNL2733a*View
10TM-1 x Hai-7124, BC1 (2008)AD_ch07_At.07N/A63.64BNL2733-200View
11TM-1 x Hai-7124, BC1 (2012)AD_ch07_At.07N/A56.7BNL2733-200View
12TM-1 x 3-79, RIL (2012.v3)AD_ch07_At.07N/A49.02BNL2733View
Sequence
>BNL2733 ID=BNL2733; Name=BNL2733; organism=Gossypium hirsutum; type=genetic_marker; length=106bp
TCGAGGGTTTAGGGTTCCTGGGAGGCGGTGGACCCATCGTGGCAGTCATG
GTTGCAGAGAGAGAGAGAGANAGGGAGGGAGGGAGGGAGGGAGGTGTTGC
ACAATT