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Marker Overview
| Name | BNL1079 |
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| Genbank ID | N/A |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Deltapine 90 |
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| Source Sequence | BNL1079_orig
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| Source Type | genomic |
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| Repeat Motif | (CA)11, (GT)11 |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | BNL1079_F: TCATACTCTTTCATCTAGCGCG |
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| Primer 2 | BNL1079_R: AAAGGAATCCAGGTGAGCCT |
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| Polymorphism | P_ BNL1079 |
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| Comment | Primer data obtained in 2000 |
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Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Image
| File Name | Legend |
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| 48_FISH_TAG-115-675.jpg | Twenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675] |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | Acala-44 x Pima S-7, F2 (2004) | AD_ch18_Dt.13 | N/A | 42.8 | BNL1079 | View |
| 2 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch18_Dt.13 | N/A | 58.4 | BNL1079 | View |
| 3 | Emian-22 x 3-79, BC1 (2011) | AD_ch18_Dt.13 | N/A | 85.73 | BNL1079 | View |
| 4 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch18_Dt.13 | N/A | 82.12 | BNL1079 | View |
| 5 | Palmeri x K-101, F2 (2007) | AD_ch18_Dt.13 | N/A | 80 | BNL1079 | View |
| 6 | AD-genome wide Reference Map (2009) | AD_ch18_Dt.13 | N/A | 29 | BNL1079 | View |
| 7 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch18_Dt.13 | N/A | 89.1 | BNL1079 | View |
| 8 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch18_Dt.13 | N/A | 102 | BNL1079 | View |
| 9 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch18_Dt.13 | N/A | 58.64 | BNL1079 | View |
| 10 | H18 x 3-79, F2 (2005) | AD_ch18_Dt.13 | N/A | 37.2 | BNL1079 | View |
| 11 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch18_Dt.13 | N/A | 48.4 | BNL1079 | View |
| 12 | SG 747 x Giza 75, BIL (2013) | AD_ch18_Dt.13 | N/A | 50.2 | BNL1079 | View |
| 13 | Monsanto SSR Bin Map, (2009) | AD_ch18_Dt.13 | N/A | 81 | BNL1079 | View |
| 14 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch18_Dt.13 | N/A | 70.7 | BNL1079b | View |
| 15 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch18_Dt.13 | N/A | 86 | BNL1079a | View |
| 16 | TM-1 x Hai-7124, BC1 (2007) | AD_ch18_Dt.13 | N/A | 61.2 | BNL1079-165 | View |
| 17 | TM-1 x Hai-7124, BC1 (2008) | AD_ch18_Dt.13 | N/A | 63.46 | BNL1079-165 | View |
| 18 | TM-1 x Hai-7124, BC1 (2012) | AD_ch18_Dt.13 | N/A | 47.4 | BNL1079-165 | View |
| 19 | GB713 x Nem-X, F2 (2011) | AD_ch18_Dt.13 | N/A | 26.3 | BNL1079_162 | View |
| 20 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch18_Dt.13 | N/A | 173 | BNL1079 | View |
Sequence
>BNL1079 ID=BNL1079; Name=BNL1079; organism=Gossypium hirsutum; type=genetic_marker; length=160bp
TCATACTCTTTCATCTAGCGCGTACGCGCGCGCACACACACACACACACA
CACAATGAACTTAGACCAACTTAGTACATATCTAACGTCATTCATGCAAG
CAACATAACATCATTCTATCACCCAACAAGCAAGGTATAGAGGCTCACCT
GGATTCCTTT
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