BNL3435, BNL3435 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL3435
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3435_orig
Source Typegenomic
Repeat Motif(AC)18
PCR ConditionAnnealing temperature: 55
Primer 1BNL3435_F: CGTGGATTTAAGCACCGATT
Primer 2BNL3435_R: TAAGAAATGGTGTTGCAATTACC
PolymorphismP_ BNL3435
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D12chromosomeD12:17547760..17547884 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018226.1chromosomeCM018226.1:25739824..25739958 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Dt_chr8chromosomeDt_chr8:15338711..15338836 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D12chromosomeD12:16950703..16950837 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D12chromosomeGhir_D12:27801636..27801761 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D12chromosomeD12:27188367..27188492 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D12chromosomeD12:27847559..27847684 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D12chromosomeD12:25792335..25792460 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Dt12chromosomeDt12:17473474..17473608 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold7294supercontigscaffold7294:295484..295618 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_D12chromosomeGbar_D12:17554271..17554403 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D12chromosomeD12:26290369..26290503 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017634.1chromosomeCM017634.1:17546743..17546855 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017712.1chromosomeCM017712.1:26853335..26853503 -Gossypium darwinii (AD5) genome HGS_v1.1
D12chromosomeD12:27766785..27766910 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr08chromosomeChr08:17565214..17565334 +Gossypium thurberi (D1-5) genome CRI_v1
chr08chromosomechr08:15950618..15950837 -Gossypium armourianum (D2-1) genome ISU_v1
Chr08chromosomeBNL3435:1..471 .
Chr08:17620649..17621104 -
Chr9chromosomeBNL3435:1..471 .
Chr9:26737858..26738313 +
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3435_origBNL3435_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Deltapine-61 x Texas-701, F2 (2007)AD_ch12_At.12N/A15.6BNL3435-123View
2Emian-22 x 3-79, BC1 (2011)AD_ch26_Dt.12N/A29.41BNL3435View
3Handan-208 x Pima-90, F2:3 (2007)AD_ch26_Dt.12N/A71.1BNL3435View
4Xinluzao-1 x Hai-7124, F2 (2008)AD_ch12_At.12N/A56.6BNL3435View
5AD-genome wide Reference Map (2009)AD_ch26_Dt.12N/A97BNL3435View
6Monsanto SSR Bin Map, (2009)AD_ch26_Dt.12N/A81BNL3435View
7PD 94042 x (AD)4-08, F2 (2016)AD_ch26_Dt.12N/A60.9BNL3435View
Sequence
>BNL3435 ID=BNL3435; Name=BNL3435; organism=Gossypium hirsutum; type=genetic_marker; length=134bp
CGTGGATTTAAGCACCGATTCATTTTTTTGAACACACACACACACACACA
CACACACACACACACACACACACACCGTTATACATTGTTTCACTTTTAAA
ATTGTTTATAAGGTAATTGCAACACCATTTCTTA