BNL0220, BNL0220 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL0220
AliasBNL220
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL0220_orig
Source Typegenomic
Repeat Motif(AG)11
PCR ConditionAnnealing temperature: 55
Primer 1BNL0220_F: ATTGTGTGTACTCCTCTTTTTGG
Primer 2BNL0220_R: TAACACCAAAGGACCCAAGC
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:23864802..23864943 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:21869559..21869698 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:25341468..25341619 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_02chromosomeD5_02:25512066..25512219 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
CM016626.1chromosomeCM016626.1:99120963..99121101 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1896.1supercontigscaffold1896.1:83555..83696 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr13chromosomeDt_chr13:1172231..1172372 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold4697_D13supercontigscaffold4697_D13:1597124..1597265 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:22645959..22646100 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:22268852..22268993 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:22889172..22889313 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:21852509..21852650 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold14938supercontigscaffold14938:185766..185905 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D13chromosomeGbar_D13:21792540..21792679 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
scaffold573-3_obj_D13supercontigscaffold573-3_obj_D13:11621..11760 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:21813085..21813226 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017713.1chromosomeCM017713.1:22275414..22275559 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:23148911..23149052 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:24894340..24894491 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr13chromosomeChr13:25511364..25511509 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:22155262..22156390 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr13chromosomeChr13:26769215..26769370 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:22482771..22482912 +Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:20937742..20937994 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr02chromosomeBNL0220:1..302 .
Chr02:28005020..28005333 +		n/a
Chr7chromosomeBNL0220:1..302 .
Chr7:21302267..21302580 +		n/a
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL0220_origBNL0220_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Handan-208 x Pima-90, F2:3 (2007)AD_ch18_Dt.13N/A143.5BNL220View
2Xinluzao-1 x Hai-7124, F2 (2008)AD_ch18_Dt.13N/A67.4BNL220View
3AD-genome wide Reference Map (2009)AD_ch18_Dt.13N/A101bnl0220View
Sequence
>BNL0220 ID=BNL0220; Name=BNL0220; organism=Gossypium hirsutum; type=genetic_marker; length=142bp
ATTGTGTGTACTCCTCTTTTTGGGAGAAAAAGCTAAAATAAGAGAGAGAG
AGAGAGAGAGAGTCTGGTAGTGCATTCTTTGATCTTGGAATCTTGGTTAC
CTCTATTCTTCCAAACTTCAATGCTTGGGTCCTTTGGTGTTA