Gh663, Gh663 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh663
Genbank IDDQ908594
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908594
Source Typegenomic
Repeat MotifCT(20)
Primer 1Gh663_F: AGTTAGGATGGTTTACAATTCTCACAC
Primer 2Gh663_R: CAAGCACAATAACAAGTGAATTACACC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908594
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:10781964..10782066 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:10664555..10664657 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:101994659..101994763 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr5chromosomeAt_chr5:14175423..14175527 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:9316275..9316379 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D03chromosomeGhir_D03:42655986..42656076 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:11815388..11815490 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:11177403..11177507 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:11603382..11603486 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:10982238..10982342 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold4965supercontigscaffold4965:168972..169074 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7000supercontigscaffold7000:169923..170013 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D03chromosomeGbar_D03:41514487..41514577 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:10517061..10517159 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017612.1chromosomeCM017612.1:11113892..11114024 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
A03chromosomeA03:11838430..11838532 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:10714119..10714233 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:107241443..107241549 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_04chromosomeB_04:11360144..11360250 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr03chromosomeGh663:2..649 .
Chr03:36501821..36502454 +		n/a
Chr1chromosomeGh663:2..649 .
Chr1:25453927..25454560 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908594DQ908594Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1GX1135 x GX100-2, F2 (2013)AD_ch03_At.03N/A24.7GH663View
2GX1135 x GX100-2, RIL (2016)AD_ch03_At.03N/A10.3GH663View
3LMY28 x XLZ24, RIL (2018)AD_ch03_At.03N/A56.48GH663View
Sequence
>Gh663 ID=Gh663; Name=Gh663; organism=Gossypium hirsutum; type=genetic_marker; length=105bp
AGTTAGGATGGTTTACAATTCTCACACAATGTTAGCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTTTCTCTCTTGGTGTAATTCACTTGTTATTGT
GCTTG