CGR5275, CGR5275 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5275
Genbank IDGQ393386
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0351
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5275_F: TCTCCAAGTATCTCCATTTCTTCTC
Primer 2CGR5275_R: GGCCGGTTAGCATCAAATTA
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393386
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A11chromosomeA11:101660800..101660939 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018212.1chromosomeCM018212.1:101503908..101504044 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:15524723..15524850 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr1chromosomeAt_chr1:8743203..8743342 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A11chromosomeA11:81494447..81494586 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:110541205..110541344 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:122112339..122112495 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:109199298..109199437 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:124607341..124607497 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:106604213..106604352 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:124190562..124190718 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:103435828..103435967 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold32144supercontigscaffold32144:52764..52875 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold17187supercontigscaffold17187:154613..154772 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12227supercontigscaffold12227:34751..34890 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A11chromosomeGbar_A11:99925087..99925226 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:103165237..103165376 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:106953710..106953849 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:119700756..119700888 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:113480847..113480995 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:102046068..102046197 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:111349272..111349411 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:113213067..113213191 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:127086258..127086393 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:113580579..113580706 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_11chromosomeB_11:92065988..92066140 +Gossypium anomalum (B1) genome NSF_v1n/a
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0351MONCS0351Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1W10 x TM-1, F2:3 (2015)AD_chUN/A8CGR5275View
Sequence
>CGR5275 ID=CGR5275; Name=CGR5275; organism=Gossypium hirsutum; type=genetic_marker; length=140bp
TCTCCAAGTATCTCCATTTCTTCTCTTTCTCCTCCTCCTCCTCCTTCTTC
TTCTTCTTCTTCATCTTCTTCTCTTATTATTTTACTATATAAACCCTAAA
TTGCTACTGATATGGCTGTTTAATTTGATGCTAACCGGCC