SWU00506, SWU00506 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU00506
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
Repeat Motif(ACA)3
Primer 1SWU00506_F: TCCAAATGTTACCACAACTG
Primer 2SWU00506_R: CTTGCCTGGAACCACAAT
Product Length112
PolymorphismP_ SWU00506
Publication[view all]
Commentmarker sequence confirmed
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:60089875..60089983 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A11chromosomeA11:100620373..100620484 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:57376391..57376499 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:11376231..11376339 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_11chromosomeKI_11:44939833..44939950 -Gossypioides kirkii genome ISU_v3n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:16349823..16349934 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:56429126..56429234 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:124824258..124824366 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr1chromosomeAt_chr1:9945583..9945694 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold866.1supercontigscaffold866.1:170278..170386 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold4272.1supercontigscaffold4272.1:660..768 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:55251087..55251195 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:80369294..80369405 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:59970743..59970851 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:109489031..109489142 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:59283039..59283147 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:108163065..108163176 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:59941723..59941831 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:105551357..105551468 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:57215691..57215799 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:102381904..102382015 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Scaffold118supercontigScaffold118:276919..277020 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Scaffold1039supercontigScaffold1039:2958..3069 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:98645001..98645112 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:98845819..98845927 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:59895780..59895888 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:102095585..102095696 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:59275868..59275976 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:105879505..105879616 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:60772712..60772820 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:56897970..56898078 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:100966207..100966318 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:59759628..59759736 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:110296010..110296121 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:114386027..114386138 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:112445470..112445581 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:9680733..9680841 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:85871007..85871121 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:56971855..56971963 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:40811970..40812078 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:38292304..38292412 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:57744724..57744832 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:34430363..34430471 -Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:30434729..30434837 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:36825334..36825442 -Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:97274158..97274266 -Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:85404775..85404883 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:20362900..20363008 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1GX1135 x VGX100-2, RIL (2016)AD_ch23_Dt.09N/A148.8SWU0506View
2CCRI-35 x Yumian-1, RIL (2015)AD_ch21_Dt.11N/A91.2SWU0506View
3CCRI-35 x Yumian-1, RIL (2017)AD_ch21_Dt.11N/A106.42SWU00506View
Sequence
>SWU00506 ID=SWU00506; Name=SWU00506; organism=Gossypium hirsutum; type=genetic_marker; length=112bp
TCCAAATGTTACCACAACTGCAACAACTACAACAACAAAGCCTACAAATT
CTGCAAAGAAACCACATCAAATCACCCCACCTTCCTTGCAGAAAATTGTG
GTTCCAGGCAAG