PGML4457, PGML4457 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML4457
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AT)9
Primer 1PGML4457_F: CCTTTGATATTCGAGGCCAA
Primer 2PGML4457_R: TCCCAGTGGCATTGTTATAAGTT
Product Length197
Publication[view all]
CommentBAC_ID=FITC90846.b1
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D05chromosomeD05:3357649..3357834 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018219.1chromosomeCM018219.1:3089430..3089615 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_05chromosomeD5_05:2984182..2984377 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1
D10_05chromosomeD10_05:57527272..57527467 -Gossypium turneri (D10) genome NSF_v1_a2
CM016626.1chromosomeCM016626.1:5253802..5254003 +Gossypium australe (G2) genome CRI_v1.1
Dt_chr9chromosomeDt_chr9:66194238..66194423 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D05chromosomeD05:3196856..3197041 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D05chromosomeGhir_D05:3332153..3332338 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D05chromosomeD05:3128570..3128755 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D05chromosomeD05:3242530..3242715 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D05chromosomeD05:3102852..3103037 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_D05chromosomeGbar_D05:3238293..3238478 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D05chromosomeD05:3389560..3389745 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017627.1chromosomeCM017627.1:3214332..3214517 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017653.1chromosomeCM017653.1:3380794..3380980 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017705.1chromosomeCM017705.1:3205535..3205720 +Gossypium darwinii (AD5) genome HGS_v1.1
D05chromosomeD05:3267008..3267193 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr05chromosomeChr05:2989557..2989750 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
B_05chromosomeB_05:82552131..82552320 -Gossypium anomalum (B1) genome NSF_v1
Chr09chromosomeChr09:3102180..3102371 +Gossypium thurberi (D1-5) genome CRI_v1
chr09chromosomechr09:2921043..2921316 +Gossypium armourianum (D2-1) genome ISU_v1
Chr_09chromosomeChr_09:3274000..3274195 +Gossypium harknessii (D2-2) genome ISU_v1
Chr09chromosomeChr09:3182149..3182375 +Gossypium davidsonii (D3d-8) genome CRI_v1
Chr09chromosomeChr09:2362193..2362387 +Gossypium gossypioides (D6) genome ISU_v1
E05chromosomeE05:3990371..3990574 +Gossypium stocksii (E1) genome NSF_v1
F05chromosomeF05:3144125..3144326 +Gossypium longicalyx (F1) genome NSF_v1
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1GX1135 x GX100-2, RIL (2015)AD_ch05_At.05N/A120.7PGML4457View
2GX1135 x GX100-2, RIL (2016)AD_ch05_At.05N/A120.7PGML4457View
Sequence
>PGML4457 ID=PGML4457; Name=PGML4457; organism=Gossypium raimondii; type=genetic_marker; length=197bp
CCTTTGATATTCGAGGCCAATCAGCCCGTGTTAAGACCTAGAGGGATATA
TATATATATATATGTGTGAGCGCGCGCGTTGTTTGTTTATTATTAAGTGT
TTGTTATTATTATTACAAAACAAAAAACATGATGATACACAATGAATAAT
GTCTTTGAAATAAATAAACAAGTAAACTTATAACAATGCCACTGGGA