PGML3983, PGML3983 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML3983
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(A)16
Primer 1PGML3983_F: AAGTGACCAATTTAATGACGTATG
Primer 2PGML3983_R: AGAAAGCCCGCAACAAATTA
Product Length248
PolymorphismP_ PGML3983
Publication[view all]
CommentBAC_ID=FITC144416.b1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:776415..776660 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:732995..733241 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:62291495..62291742 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_03chromosomeD10_03:61785321..61785573 -Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr1chromosomeAt_chr1:106205196..106205441 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:748183..748428 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:772359..772604 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:711585..711830 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:771575..771820 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:775991..776236 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:740660..740906 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017624.1chromosomeCM017624.1:818784..819031 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:977180..977424 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:543408..543655 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:791533..791778 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:738055..738301 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:796272..796526 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_05chromosomeChr_05:775459..775713 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:805103..805359 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:578155..578407 -Gossypium gossypioides (D6) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch14_Dt.02N/A4.6PGML3983View
2GX1135 x VGX100-2, RIL (2016)AD_ch02_At.02N/A1.4PGML3983View
Sequence
>PGML3983 ID=PGML3983; Name=PGML3983; organism=Gossypium raimondii; type=genetic_marker; length=248bp
AAGTGACCAATTTAATGACGTATGTAATTTACCCTAAATATAACTATTTT
TATATACATATTTTCCAAAAAAGTTTAATAAAATCAAGTTGCTAGCAAAT
AAGAGATAATAATATAAATTTCTTGAGCCACAAAAATGCAAAAAAAAAAA
AAAAACCCAAACCCCTGTTATAATTTAGTACTACAAAATTACAAATTGAC
ATTTCTTTGAATTTTTTAATAACTGCAATAATTTGTTGCGGGCTTTCT