PGML3707, PGML3707 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML3707
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AAATT)3
Primer 1PGML3707_F: TATGCATGTGGAAATCACGG
Primer 2PGML3707_R: TCTTAAATTTACCAATCAATCAAAGC
Product Length321
Publication[view all]
CommentBAC_ID=FITC43300.b1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:1482360..1482680 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:1413558..1413878 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:1202199..1202518 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_13chromosomeD10_13:1215799..1216101 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr13chromosomeDt_chr13:55614984..55615304 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:1455967..1456287 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:1408680..1409000 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:1318809..1319129 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:1400611..1400931 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:1390374..1390694 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:1211285..1211605 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:1228170..1228490 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:1326657..1326977 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:1524279..1524598 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:1336807..1337127 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:1471953..1472273 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:1210427..1210745 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:93438629..93438946 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr_13chromosomeChr_13:1335601..1336485 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:1457696..1457998 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:1398670..1398989 -Gossypium aridum (D4) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch24_Dt.08N/A67.7PGML3707View
Sequence
>PGML3707 ID=PGML3707; Name=PGML3707; organism=Gossypium raimondii; type=genetic_marker; length=321bp
TATGCATGTGGAAATCACGGATTTAGAATACAGATGTGTGTTTAAAAATA
ATATAAAATAAATAATGAAACATATGGTTTGAAATGAATCATAATAACAC
ATAAAATATGTACAATATTAAAATAAAAAAATTAAATTAAATTTTGAACA
TTTTTTAAAGACTAAAACCGAAATTATACCATCGTTTTAAAATCTCAAAA
AGAAAAACACGTGTGAGGAAACTTACAATAAATTAAAGATATAATAATAT
ATTGTGTATATTAAAATAAAAATGTATGAAATATATTAAAATAAAGCTTT
GATTGATTGGTAAATTTAAGA