PGML3018, PGML3018 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML3018
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TG)8
Primer 1PGML3018_F: TGGTGTCCCAACTTCTTCTTT
Primer 2PGML3018_R: CACAACAAAGAAACAAACCACAA
Product Length209
Publication[view all]
CommentBAC_ID=FITC160707.b1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:5680003..5680221 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A01chromosomeA01:8149222..8149436 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:6134362..6134558 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018202.1chromosomeCM018202.1:7408334..7408549 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:5887393..5887601 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:8412154..8412371 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016614.1chromosomeCM016614.1:8935609..8935833 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr2chromosomeAt_chr2:7744205..7744419 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:5346785..5347003 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:7020646..7020860 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:6534216..6534433 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:7326598..7326812 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:6402121..6402339 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:7095194..7095408 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:5965401..5965619 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:7481393..7481607 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:6401223..6401439 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:7277090..7277304 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D01chromosomeGbar_D01:6811768..6811964 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:7371600..7371815 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:6574148..6574344 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:6323957..6324173 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:7126578..7126798 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:7480014..7480230 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D01chromosomeD01:6651785..6652003 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:7484929..7485143 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:7469245..7469462 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:8220273..8220491 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:5877502..5877710 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:6566141..6566351 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:7721732..7721952 +Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:5241865..5242070 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:6953281..6953505 +Gossypium lobatum (D7) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch15_Dt.01N/A31.7PGML3018View
2CCRI-35 x Yumian-1, RIL (2015)AD_ch15_Dt.01N/A50PGML3018View
3CCRI-35 x Yumian-1, RIL (2017)AD_ch15_Dt.01N/A30.74PGML3018View
Sequence
>PGML3018 ID=PGML3018; Name=PGML3018; organism=Gossypium raimondii; type=genetic_marker; length=209bp
TGGTGTCCCAACTTCTTCTTTTTCTCATTTTGCACCATTATTTATTTTAT
TCACTTCTTAGTCATATTAGTGCATTCACAATGTAAGATTCTACATGAAT
ATTTCTTTTTGTGTGTGTGTGTGTGTTATTTTTCCATTATTAAAGGCAAA
ATATTTTATTATGGTAGTTAATAAAATAAATTTAATTTGTGGTTTGTTTC
TTTGTTGTG