PGML2477, PGML2477 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML2477
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AAT)6
Primer 1PGML2477_F: GGCAGTCCATCTTGTCTGGT
Primer 2PGML2477_R: CTGAACTTCGTAACTCACTCCC
Product Length230
Publication[view all]
CommentBAC_ID=FITC50652.g1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:7319310..7319536 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:6789551..6789778 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:6518904..6519132 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_13chromosomeD10_13:6703089..6703315 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr13chromosomeDt_chr13:49948082..49948308 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:6906795..6907021 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:6914020..6914247 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:6772102..6772328 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:7136602..7136828 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:6795189..6795415 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:6545509..6545736 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:6517964..6518191 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:6794629..6794855 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:7229448..7229674 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:6784449..6784676 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:7304056..7304282 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:6436823..6437052 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:86862904..86863124 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:6935827..6936050 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_13chromosomeChr_13:6269545..6269771 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:7186236..7186461 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:6264863..6266002 -Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:6265616..6266285 -Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:6330245..6330697 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr13chromosomeChr13:6329899..6330464 -Gossypium lobatum (D7) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch13_At.13N/A117.4PGML2477View
Sequence
>PGML2477 ID=PGML2477; Name=PGML2477; organism=Gossypium raimondii; type=genetic_marker; length=230bp
GGCAGTCCATCTTGTCTGGTCGCTTGGCTCAAACTTTAGATTTTTCAATT
TTAGATGAACTTGGCCCAACTTGTTTTATTACTTAAAAATAATAATAATA
ATAATATATAAATAATTTTATATTAATATTAATATGTTTCTCTAATCAAA
TTTAAATAAATATATTGAACTTTCATGCTTCCTATAAAGTTAGAGATAGA
AATAAAAGGGGAGTGAGTTACGAAGTTCAG