PGML1916, PGML1916 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML1916
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TC)18,(TATG)4
Primer 1PGML1916_F: TCCGGTTGATGAATTGATTG
Primer 2PGML1916_R: TCAATTCCAGAACATGAAGCA
Product Length180
Publication[view all]
CommentBAC_ID=FITC55543.b1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:56686431..56686602 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A07chromosomeA07:92456084..92456267 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:54662440..54662613 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:50073864..50074035 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:96091939..96092156 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold2269.1supercontigscaffold2269.1:54678..54861 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold104.1supercontigscaffold104.1:1304736..1304907 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:53801420..53801591 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A07chromosomeA07:76932054..76932237 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:57763124..57763295 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:96391448..96391631 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:57007298..57007469 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:95311910..95312093 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:57386306..57386477 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:95387371..95387554 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:53718118..53718289 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A07chromosomeA07:91900559..91900726 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:55052445..55052618 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:91406611..91406750 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:55634398..55634571 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:55593966..55594137 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017616.1chromosomeCM017616.1:95425799..95425978 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:56600943..56601118 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:98312289..98312456 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:55668808..55668979 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:57982934..57983105 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A07chromosomeA07:97577025..97577208 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:99318654..99318855 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:100665088..100665305 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:1398069..1398242 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr01chromosomeChr01:54528065..54528228 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:44253412..44253569 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:39171674..39171906 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:32118182..32118351 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:39908411..39908582 -Gossypium lobatum (D7) genome ISU_v1n/a
F07chromosomeF07:81114189..81114370 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:156195416..156195605 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1GX1135 x GX100-2, RIL (2016)AD_ch07_At.07N/A164.9PGML1916View
2CCRI-35 x Yumian-1, RIL (2015)AD_ch16_Dt.07N/A187.7PGML1916View
3CCRI-35 x Yumian-1, RIL (2017)AD_ch16_Dt.07N/A151.85PGML1916View
Sequence
>PGML1916 ID=PGML1916; Name=PGML1916; organism=Gossypium raimondii; type=genetic_marker; length=180bp
TCCGGTTGATGAATTGATTGATTGAAGTACATATTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTGTATGTATATGTATGTATATAAATTTATG
TATGTATGTATGGATACACACACACCAAAAATCTTGCTTGTTTGCTGTAA
ATATTTCATTGCTTCATGTTCTGGAATTGA