PGML1368, PGML1368 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML1368
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TTA)10
Primer 1PGML1368_F: CCGAGTTGGTGTCACTCTCA
Primer 2PGML1368_R: GGGTCAAATAAATCATTATGCCA
Product Length210
Publication[view all]
CommentBAC_ID=FITC156295.g1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:66395105..66395302 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:62532356..62532544 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:4406689..4406897 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_03chromosomeD10_03:4345770..4345982 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr5chromosomeDt_chr5:11377910..11378107 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:63534825..63535022 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:65229636..65229833 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:65357369..65357566 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:66566387..66566584 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:63676013..63676210 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:63130237..63130425 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:64437261..64437449 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:65488787..65488990 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:67126296..67126493 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:64028843..64029043 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:67575107..67575304 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:58687688..58687895 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr_05chromosomeChr_05:40139183..40139413 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:63202257..63202489 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:40539891..40540265 +Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:34451510..34451699 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr05chromosomeChr05:42223665..42223885 +Gossypium lobatum (D7) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1GX1135 x GX100-2, RIL (2016)AD_ch14_Dt.02N/A96.9PGML1368View
Sequence
>PGML1368 ID=PGML1368; Name=PGML1368; organism=Gossypium raimondii; type=genetic_marker; length=210bp
CCGAGTTGGTGTCACTCTCAACTAATTCTCAACTCAATTGTAAAATTACC
AAAAATCATTCCTTTTAGAAATGAACAAATATATTCTTAAAGGTATTCAT
CATCATATTATTATTATTATTATTATTATTATTATTACATTTTGATAATA
AGAATCATGATATTAGAACAAAAGAAATTATAATTTTTGGCATAATGATT
TATTTGACCC