PGML1171, PGML1171 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML1171
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TAAA)3
Primer 1PGML1171_F: TTTGCTTGTCATAAATTTCGC
Primer 2PGML1171_R: AACCACCGATCTGTTGGAAA
Product Length173
Publication[view all]
CommentBAC_ID=FITC179031.g1
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
A07chromosomeA07:84756856..84757027 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018208.1chromosomeCM018208.1:84266925..84267096 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_07chromosomeD5_07:44240274..44240445 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1
Dt_chr1chromosomeDt_chr1:95073683..95073854 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A07chromosomeA07:69293861..69294032 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A07chromosomeGhir_A07:88511901..88512072 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A07chromosomeA07:87692938..87693109 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A07chromosomeA07:87225438..87225609 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A07chromosomeA07:84075116..84075287 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_A07chromosomeGbar_A07:83675097..83675268 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A07chromosomeA07:85680429..85680600 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017616.1chromosomeCM017616.1:87415211..87415382 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017642.1chromosomeCM017642.1:90088089..90088260 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017694.1chromosomeCM017694.1:85678088..85678259 -Gossypium darwinii (AD5) genome HGS_v1.1
A07chromosomeA07:89709230..89709401 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr07chromosomeChr07:8063906..8064077 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
Chr01chromosomeChr01:26440490..26440661 -Gossypium gossypioides (D6) genome ISU_v1
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-35 x Yumian-1, RIL (2015)AD_ch07_At.07N/A44.5PGML1171View
2CCRI-35 x Yumian-1, RIL (2017)AD_ch07_At.07N/A72.57PGML1171View
3901-001 x sGK156, F2 (2019)AD_ch07_At.07N/A32.26PGML01171View
Sequence
>PGML1171 ID=PGML1171; Name=PGML1171; organism=Gossypium raimondii; type=genetic_marker; length=173bp
TTTGCTTGTCATAAATTTCGCTATGCATGAAAATATAAAAAGACATAAAT
ACAAAAGACATAATAGTGAAATGTGAAATTAACTTTATTTATTTATTCAT
CATTCAAATAAATAAATAAAAACAGTTACATGTTTACTATATTACGAGCA
CATTTTCCAACAGATCGGTGGTT