PGML0785, PGML0785 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0785
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(T)15
Primer 1PGML0785_F: CATTGGGTTGAGGGTGAGAT
Primer 2PGML0785_R: TCTAAATGCCACTTCGATGG
Product Length200
Publication[view all]
CommentBAC_ID=FITB1610.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:27003089..27003283 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A09chromosomeA09:48358127..48358327 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:25623336..25623531 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:45000004..45000203 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:20435772..20435971 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:55073043..55073246 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:23559890..23560090 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:42278797..42279009 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr6chromosomeDt_chr6:24399746..24399940 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr6chromosomeAt_chr6:36067225..36067425 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:25820970..25821164 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A09chromosomeA09:43421188..43421388 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:27729681..27729875 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:48899510..48899710 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:27570720..27570914 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:50974888..50975088 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:27236892..27237086 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:50301541..50301741 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:25609636..25609830 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A09chromosomeA09:47286277..47286477 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:26221877..26222072 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:45895549..45895748 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:29078996..29079191 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A09chromosomeA09:47013579..47013778 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:26612379..26612573 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017618.1chromosomeCM017618.1:46371213..46371414 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:27699534..27699727 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:49076080..49076282 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:27084344..27084537 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017696.1chromosomeCM017696.1:46811977..46812176 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:28684068..28684262 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A09chromosomeA09:51413232..51413432 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:49519844..49520045 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:53153864..53154067 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:25663867..25664066 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:39402223..39402428 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:23070216..23070417 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_06chromosomeChr_06:13687038..13687238 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:27137089..27137289 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:14721829..14722126 -Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:10520734..10520935 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06chromosomeChr06:13138897..13139094 -Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:35694458..35694662 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr09chromosomeChr09:62454580..62454788 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch09_At.09N/A28.2PGML0785View
2CCRI-35 x Yumian-1, RIL (2015)AD_ch09_At.09N/A8.9PGML0785View
3Yumian-1 x 7235, RIL (2015)AD_ch09_At.09N/A60PGML785View
4CCRI-35 x Yumian-1, RIL (2017)AD_ch09_At.09N/A38.75PGML0785View
Sequence
>PGML0785 ID=PGML0785; Name=PGML0785; organism=Gossypium raimondii; type=genetic_marker; length=200bp
CATTGGGTTGAGGGTGAGATTGATGAATGATGGGAGTTTGAATTAAAAAT
GGGAGATGAGAAAGAAGAATTTGGAAGACTGAATGTAGCTGTCGCACCAC
TCCTTCAATTCAACAACCGGTAAGTAGAGTGTTTCATGATTTTTTTTTTT
TTTTATAGGTGTTTGGAACCAATTCTATTTCCATCGAAGTGGCATTTAGA