PGML0727, PGML0727 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0727
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(CA)9
Primer 1PGML0727_F: TTTCCATTGACCAATTTGTTT
Primer 2PGML0727_R: GAATATTAGGGTGCATTTGTTTCA
Product Length100
Publication[view all]
CommentBAC_ID=FITB7123.y1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:21468332..21468432 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:19814623..19814718 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:14784025..14784124 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr6chromosomeDt_chr6:27861462..27861562 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:20892977..20893077 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:22047793..22047892 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:21456173..21456273 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:19890997..19891097 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:20423700..20423795 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017631.1chromosomeCM017631.1:20927733..20927828 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:21276514..21276610 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:21097530..21097625 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:22838014..22838114 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:20017420..20017518 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr06chromosomeChr06:19972035..19972134 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_06chromosomeChr_06:17596011..17596443 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:17139795..17139897 -Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:48343040..48343141 -Gossypium stocksii (E1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch23_Dt.09N/A12.4PGML0727View
2CCRI-35 x Yumian-1, RIL (2015)AD_ch23_Dt.09N/A98.5PGML0727View
30-153 x sGK9708, RIL (2016)AD_ch23_Dt.09N/A50.3PGML00727View
4Yumian-1 x 7235, RIL (2015)AD_ch23_Dt.09N/A14PGML727View
5CCRI-35 x Yumian-1, RIL (2017)AD_ch23_Dt.09N/A83.84PGML0727View
Sequence
>PGML0727 ID=PGML0727; Name=PGML0727; organism=Gossypium raimondii; type=genetic_marker; length=100bp
TTTCCATTGACCAATTTGTTTTACATGAAACAAACACACACACACACACA
CAAAAAAACCCTCAAGTCATTTTTCATGAAACAAATGCACCCTAATATTC