pAR0574, pAR0574 (genetic_marker) Gossypium hirsutum

Marker Overview
NamepAR0574
Genbank IDCA993148
TypeRFLP
SpeciesGossypium hirsutum
GermplasmT-25
Source TypecDNA
Restriction EnzymeEcoR1; Xho1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA993148
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:63854321..63855383 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A04chromosomeA04:512639..513704 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:61976893..61977955 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018205.1chromosomeCM018205.1:728621..729686 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:56313877..56314927 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:96328935..96330000 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:462435..463500 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold516.1supercontigscaffold516.1:501003..502068 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:61478736..61479798 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A04chromosomeA04:472110..473175 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:62456709..62457771 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A04chromosomeGhir_A04:1043955..1045020 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:63495353..63496415 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:482272..483337 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:63661821..63662883 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:519050..520115 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:61877464..61878526 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A04chromosomeA04:503955..505020 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At04chromosomeAt04:285216..286281 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5337supercontigscaffold5337:440474..441536 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3983supercontigscaffold3983:30490..31555 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A04chromosomeGbar_A04:738165..739230 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:66077734..66078796 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A04chromosomeA04:666469..667534 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:62232593..62233655 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017613.1chromosomeCM017613.1:680464..681529 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:65404571..65405633 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017639.1chromosomeCM017639.1:669444..670509 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:63161596..63162658 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017691.1chromosomeCM017691.1:781718..782783 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:66014758..66015820 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A04chromosomeA04:478629..479694 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:94280212..94281277 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:96764283..96765348 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:56684888..56685938 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:57706837..57707902 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:54584115..54585180 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:52031076..52032142 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:62602998..62604063 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:52101133..52102197 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:42413925..42414990 +Gossypium gossypioides (D6) genome ISU_v1n/a
F05chromosomeF05:75921193..75922258 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr09chromosomepAR0574:18..1080 .
Chr09:70227025..70228075 +		n/a
Chr10chromosomepAR0574:18..1080 .
Chr10:47310507..47311557 -		n/a
Germplasm
Stock NameType
T-25accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch04_At.04N/A186.4pAR574bView
2Palmeri x K-101, F2 (2007)AD_ch25_Dt.06N/A159.9pAR574bView
3Palmeri x K-101, F2 (2007)AD_ch06_At.06N/A114pAR574aView
4Pima S-7 x im, F2 (2007)AD_ch19_Dt.05N/A194pAR0574View
5Pima S-7 x n2, F2 (2007)AD_ch19_Dt.05N/A19.1pAR0574View
6AD-genome wide Reference Map (2009)AD_ch18_Dt.13N/A48pAR0574View
7AD-genome wide Reference Map (2009)AD_ch25_Dt.06N/A195pAR0574View
8AD-genome wide Reference Map (2009)AD_ch04_At.04N/A155pAR0574View
9AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A328pAR0574View
10AD-genome wide Reference Map (2009)AD_ch06_At.06N/A234pAR0574View
11TM-1 x WT-936, F2 (2005)AD_ch18_Dt.13N/A62.8pAR0574View
Sequence
>pAR0574 ID=pAR0574; Name=pAR0574; organism=Gossypium hirsutum; type=genetic_marker; length=1090bp
TTTTTTTTTTTTTTTTTTACATTTTCAACCTTCTTTTTTACTATTCCTGT
TTAAGTAACATCATGGAGAAAACCAAGCCCACAGCCTTTCAATATGCAAA
ATCAAATGATGTTTTCACTTACGCAAAATACAAATTTGAAAATTAAGACA
ATCAAGCATATATGATCATTATCATTTCTAGAAACTCTAATTTGCACATC
ATCATGAACTCTTACATTCCCTCGAAATAAGAAAAAGAAAAATGGTTCTG
AAAATAATTAAAAGAAATCGAATTCGAGATAGTTACTTTGATCCTTAGCA
GCAGGAACAGAAGGTTTATCACCGGCTGATGAGGTAGGGGTTCGAATCCG
TTCTATGTCAACCGGTTTTGGAATCTCTGGTGGACTTGCACAACGGATTA
AAGCCCAGTTTACACCTTCAAAGAAAGGATGTTGCTTAATCTCCGTTGCT
CCTCGCTTGTATGCCAACCTATGCTGTGGCTCTTTGACCAGCAAGCCCCT
TATCAAATCTTTTGCTGAAAAACTTACTACCGGTGATTCCGGGAACCTCA
AGGGCTGCCCTACAACATTGAAGAGGGTCGCTCGGTTCCCAGACCCTTTG
AAAGGAGTTTTACCAAACAATAGCTCGTATAAGAAGATCCCGAATGTCCA
CCAATCAACAGCACTTCCATGTCCCTCACCTTTGATAATTTCAGGTGCCA
AGTACTCATGGGTTCCCACGAATGACATGGAGCGAGCATTTGTTGGCTCG
GCAATAAGCTCGGGCAATGGACTGACTTGGTTCCCCATATCGTTCTTGGG
TTTCCGATCTTTTTTGGATTTTGATGAAAAGAAACGGGGTGAAAAACATG
TCGTAGGGGCGACACATGATGGCTGGATGCAGGAAGGCTGGATGCAAGCT
GGTTGTACACAATAACCCGAATTCTTTCGCAAGGGTTCAGACTCAAGTGT
GGATGACTTTATTAGTGTTGGACTAACAGTACAACGAAGGGAAAGATCAA
AATCCGAAAGCATTATATGTCCATCTTCTCGAACAAGAACATTTTCCGGC
TTGAGATCACGATAAACAACACCAAGCATGGGACTCGTGC