pGH618, pGH618 (genetic_marker) Gossypium hirsutum

Marker Overview
NamepGH618
Genbank IDCA993932
TypeRFLP
SpeciesGossypium hirsutum
GermplasmTM-1
Source TypecDNA
Restriction EnzymePst1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA993932
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:11664034..11664767 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A01chromosomeA01:15272588..15273321 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:11731261..11731994 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018202.1chromosomeCM018202.1:13848159..13848892 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:11246902..11247633 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_01chromosomeKI_01:7610854..7611589 -Gossypioides kirkii genome ISU_v3n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:15315482..15316215 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:49156879..49157612 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:19311573..19312299 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr2chromosomeDt_chr2:43744651..43745432 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold7357.1supercontigscaffold7357.1:229..1021 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:10906298..10907031 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:14212217..14212950 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:12225285..12226018 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:14545164..14545897 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:11976831..11977564 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:14101476..14102209 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:11755642..11756373 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:14443983..14444716 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:12115637..12116370 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:14310248..14310981 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt01chromosomeDt01:11064518..11065251 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold33551supercontigscaffold33551:9734..10467 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold33551supercontigscaffold33551:24012..24745 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10212supercontigscaffold10212:395514..396247 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:12338673..12339406 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:13975340..13976073 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:12155913..12156646 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A01chromosomeA01:13977905..13978638 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:11958584..11959317 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:15180025..15180758 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:12846035..12846768 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:14339917..14340650 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:12120195..12120928 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:14044967..14045700 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:12434384..12435117 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:14466023..14466756 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:14159708..14160441 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:15184189..15184922 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:11127945..11128678 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_01chromosomeB_01:15717425..15718158 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:12101242..12101975 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:10637838..10638572 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:9578972..9579705 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:11879714..11880447 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:11869681..11870414 -Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:8170268..8171001 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:10724152..10724885 -Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:17185866..17186599 -Gossypium stocksii (E1) genome NSF_v1n/a
F01chromosomeF01:12376910..12377634 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr01chromosomeChr01:174334538..174335271 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr02chromosomepGH618:1..734 .
Chr02:13110015..13110748 -		n/a
Chr2chromosomepGH618:1..734 .
Chr2:40662297..40663030 -		n/a
Germplasm
Stock NameType
TM-1accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Deltapine-61 x Seaberry, F2 (2000)AD_ch01_At.01N/A76.8pGH618View
2Palmeri x K-101, F2 (2007)AD_ch01_At.01N/A120.3pGH618View
3Pima S-7 x Empire, F2 (2007)AD_ch01_At.01N/A6.9pGH618View
4AD-genome wide Reference Map (2009)AD_ch01_At.01N/A80pGH618View
5CAMD-E x Seaberry, F2 (1998)AD_ch01_At.01N/A13.8pGH618View
Sequence
>pGH618 ID=pGH618; Name=pGH618; organism=Gossypium hirsutum; type=genetic_marker; length=734bp
TCAGTGCAACAACAAACTCACCTCATTGAATAAATCTAGCAAATCTACAT
AATAAGGCTTTCCTCTAAAGTGCTTCTTGAGAATTCTGAAGATTTGGTTT
CGCAGAATTAAGCCATCACTGATAGCAATCATCCCAACCTACAATGAAAC
TTTCAGACGTTAGAATTTCCACAGTGCCGAGAAAGACAACTCCATGGACA
GACTCAACTGGTTTGCAAACTGATTTATCCCCAGAAAGCACAAAGGAACA
AACAAGATTGTGTTGTAATGTTAGGAAGGGAAGGTCATTCTTTGTTAAGT
TACCTGAGGAAGCCTGAACCAACATGGATGACCTCTGCGTGTATGAGAGC
CATCCATGATATCATCGAGAACAAGAAAGTATGCTTGAAGCTGTTCAATG
TTAAGAAAAAAAGTCAATTCCAGTAGAACAAAAGTGAAACAACTGTTGCA
ACTATTGATGAGAATGAGGAAAAATAACAGTAAAGGTTATGTATCCTTAA
GGCATACCCATTCAATGCACCAACCAAGGGCACATGCAAGAAAAAATTCA
TCATCACTCAGCTCTTTCCCTTCTTTCAACAACTTGAAGCTATCAATGAC
AGACAACCCTCTGTTCAGCTTTCCTGCCAACAATAAAATCATTGAACACC
CTTAATAAAGATACAGGTCGCTTATCGGTTTTTATTCTGAACTGTGACAG
ACTTCATACCTCCAGGAACATTGTAATCTAGCAT