pGH377, pGH377 (genetic_marker) Gossypium hirsutum

Marker Overview
NamepGH377
Genbank IDCA993877
TypeRFLP
SpeciesGossypium hirsutum
GermplasmTM-1
Source TypecDNA
Restriction EnzymePst1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA993877
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:11664034..11664767 -
A01chromosomeA01:15272588..15273321 -
CM018215.1chromosomeCM018215.1:11731261..11731994 -
CM018202.1chromosomeCM018202.1:13848159..13848892 -
D5_01chromosomeD5_01:11246902..11247633 -
KI_01chromosomeKI_01:7610854..7611589 -
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:15315482..15316215 -
D10_01chromosomeD10_01:49156879..49157612 +
CM016614.1chromosomeCM016614.1:19311573..19312299 -
Dt_chr2chromosomeDt_chr2:43744651..43745432 +
scaffold7357.1supercontigscaffold7357.1:229..1021 -
D01chromosomeD01:10906298..10907031 -
A01chromosomeA01:14212217..14212950 -
Ghir_D01chromosomeGhir_D01:12225285..12226018 -
Ghir_A01chromosomeGhir_A01:14545164..14545897 -
D01chromosomeD01:11976831..11977564 -
A01chromosomeA01:14101476..14102209 -
D01chromosomeD01:11755642..11756373 -
A01chromosomeA01:14443983..14444716 -
D01chromosomeD01:12115637..12116370 -
A01chromosomeA01:14310248..14310981 -
Dt01chromosomeDt01:11064518..11065251 -
scaffold33551supercontigscaffold33551:9734..10467 +
scaffold33551supercontigscaffold33551:24012..24745 +
scaffold10212supercontigscaffold10212:395514..396247 -
Gbar_D01chromosomeGbar_D01:12338673..12339406 -
Gbar_A01chromosomeGbar_A01:13975340..13976073 -
D01chromosomeD01:12155913..12156646 -
A01chromosomeA01:13977905..13978638 -
CM017623.1chromosomeCM017623.1:11958584..11959317 -
CM017610.1chromosomeCM017610.1:15180025..15180758 -
CM017649.1chromosomeCM017649.1:12846035..12846768 -
CM017636.1chromosomeCM017636.1:14339917..14340650 -
CM017701.1chromosomeCM017701.1:12120195..12120928 -
CM017688.1chromosomeCM017688.1:14044967..14045700 -
D01chromosomeD01:12434384..12435117 -
A01chromosomeA01:14466023..14466756 -
Chr01chromosomeChr01:14159708..14160441 -
Chr01chromosomeChr01:15184189..15184922 -
Chr01chromosomeChr01:11127945..11128678 -
B_01chromosomeB_01:15717425..15718158 -
Chr02chromosomeChr02:12101242..12101975 -
chr02chromosomechr02:10637838..10638572 -
Chr_02chromosomeChr_02:9578972..9579705 -
Chr02chromosomeChr02:11879714..11880447 -
Chr02chromosomeChr02:11869681..11870414 -
Chr02chromosomeChr02:8170268..8171001 -
Chr02chromosomeChr02:10724152..10724885 -
E01chromosomeE01:17185866..17186599 -
F01chromosomeF01:12376910..12377634 -
Chr01chromosomeChr01:174334538..174335271 +
Chr02chromosomepGH377:1..734 .
Chr02:13110015..13110748 -
Chr2chromosomepGH377:1..734 .
Chr2:40662297..40663030 -
Germplasm
Stock NameType
TM-1accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch01_At.01N/A168.7pGH377View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch01_At.01N/A79.83pGH377View
3AD-genome wide Reference Map (2009)AD_ch01_At.01N/A80pGH377View
Sequence
>pGH377 ID=pGH377; Name=pGH377; organism=Gossypium hirsutum; type=genetic_marker; length=734bp
TCAGTGCAACAACAAACTCACCTCATTGAATAAATCTAGCAAATCTACAT
AATAAGGCTTTCCTCTAAAGTGCTTCTTGAGAATTCTGAAGATTTGGTTT
CGCAGAATTAAGCCATCACTGATAGCAATCATCCCAACCTACAATGAAAC
TTTCAGACGTTAGAATTTCCACAGTGCCGAGAAAGACAACTCCATGGACA
GACTCAACTGGTTTGCAAACTGATTTATCCCCAGAAAGCACAAAGGAACA
AACAAGATTGTGTTGTAATGTTAGGAAGGGAAGGTCATTCTTTGTTAAGT
TACCTGAGGAAGCCTGAACCAACATGGATGACCTCTGCGTGTATGAGAGC
CATCCATGATATCATCGAGAACAAGAAAGTATGCTTGAAGCTGTTCAATG
TTAAGAAAAAAAGTCAATTCCAGTAGAACAAAAGTGAAACAACTGTTGCA
ACTATTGATGAGAATGAGGAAAAATAACAGTAAAGGTTATGTATCCTTAA
GGCATACCCATTCAATGCACCAACCAAGGGCACATGCAAGAAAAAATTCA
TCATCACTCAGCTCTTTCCCTTCTTTCAACAACTTGAAGCTATCAATGAC
AGACAACCCTCTGTTCAGCTTTCCTGCCAACAATAAAATCATTGAACACC
CTTAATAAAGATACAGGTCGCTTATCGGTTTTTATTCTGAACTGTGACAG
ACTTCATACCTCCAGGAACATTGTAATCTAGCAT