pGH783, pGH783 (genetic_marker) Gossypium hirsutum

Marker Overview
NamepGH783
Genbank IDCA993969
TypeRFLP
SpeciesGossypium hirsutum
GermplasmTM-1
Source TypecDNA
Restriction EnzymePst1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA993969
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A09chromosomeA09:72191479..72192258 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018210.1chromosomeCM018210.1:67701010..67701787 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:74831664..74832445 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr6chromosomeAt_chr6:54091687..54092467 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A09chromosomeA09:67109001..67109780 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A09chromosomeGhir_A09:71937823..71938602 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A09chromosomeA09:73555015..73555794 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:73706496..73707276 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:70330567..70331346 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At09chromosomeAt09:69824692..69825469 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3413supercontigscaffold3413:196523..197300 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A09chromosomeGbar_A09:68134071..68134848 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A09chromosomeA09:69629989..69630766 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017618.1chromosomeCM017618.1:69520918..69521693 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017644.1chromosomeCM017644.1:72445849..72446626 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017696.1chromosomeCM017696.1:69635327..69636106 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A09chromosomeA09:75134940..75135719 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:74181642..74182426 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:77124659..77125439 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
TM-1accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Pima S-7 x Empire, F2 (2007)AD_ch09_At.09N/A16.9pGH783aView
2Palmeri x K-101, F2 (2007)AD_ch09_At.09N/A79.9pGH783aView
3Palmeri x K-101, F2 (2007)AD_ch23_Dt.09N/A111.9pGH783bView
4Pima S-7 x Empire, F2 (2007)AD_ch23_Dt.09N/A81pGH783bView
5PD 94042 x (AD)4-08, F2 (2016)AD_ch22_Dt.04N/A0pGH783bView
6AD-genome wide Reference Map (2009)AD_ch23_Dt.09N/A142pgh783View
7AD-genome wide Reference Map (2009)AD_ch09_At.09N/A160pgh783View
8TM-1 x WT-936, F2 (2005)AD_ch09_At.09N/A115.4pgh783View
9PD 94042 x (AD)4-08, F2 (2016)AD_ch17_Dt.03N/A153.9pGH783aView
10PD 94042 x (AD)4-08, F2 (2016)AD_ch23_Dt.09N/A145.7pGH783dView
Sequence
>pGH783 ID=pGH783; Name=pGH783; organism=Gossypium hirsutum; type=genetic_marker; length=780bp
GGATGAAGCAGAAAAAATATTTTTAAAAGGTTAAGGTATCATTATATTAA
TTTATAATTTTTCAAGGGACTTCAAAATAAATTTACCATAAAAGCGACAG
ACGTGTTGTTTGATCTCACCGCCCTAATTTTGCAACATAAGCATATTAGG
CTGGTTGATGCAGCACATATATACCATACTTTTGCCTATCCATTTATAAC
TTCACTTTTCTCATAAAAGTGACACTATAAAATTATGCATCACATTTATT
TATTTATCTTCTTGTAAAATTGATGAACTCCAGTAAATCCCATTACCTAA
TATACAAAAAAAAAAAAAAGTGTGAAGAATCGTTACCCCCTCCCTTTCTC
TCAATCAGATTTTGGGTTTGGGCTTAAAGGTTAAAATGTTCCAGTTAAAA
GGCCTTATTGTAAAGAACCCAGTCAAGGCTACCAATGGTGACCACTCCAT
GGGGAATGACAAAAATGAGCCTCAAGCATGAAATGAAACTCTCAAATAAA
TAATCTAGGACCAGCTTTTGCCTTGACTGCAACAAACATAAAAAGGCCTT
CTTCGACCACAAGGTTGTACAAGGGAGCCAAACATGTCAATAATTTGAAG
CAACTATATCCAATGAGGCGAAACATTAGGCTACATTGTCAGTCACCCAA
TCATAAGATACTTGAAACATACAATAAAAACATTTAAATGGATATTATCA
GCTTTTCCTAGTATAAAAAGCAGTCAGATCAACCATAACGTCCAAATGCA
GCCGAGCAGATTCCCACGAACAGGAAAAGA