pAR0888, pAR0888 (genetic_marker) Gossypium hirsutum

Marker Overview
NamepAR0888
Genbank IDCA993495
TypeRFLP
SpeciesGossypium hirsutum
GermplasmT-25
Source TypecDNA
Restriction EnzymeEcoR1; Xho1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA993495
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:21769829..21770225 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:23659138..23659566 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:20537988..20538378 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:22736562..22736990 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_05chromosomeKI_05:17229569..17229968 -Gossypioides kirkii genome ISU_v3n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:23413975..23414403 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:41080814..41081201 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:88843090..88843486 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold4067_D05supercontigscaffold4067_D05:145509..145905 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:21134268..21134696 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:21073471..21073867 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:23285609..23286037 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:20593244..20593640 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:22628420..22628848 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:20926849..20927245 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:23340459..23340887 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:20808196..20808592 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:23484846..23485274 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At05chromosomeAt05:18303545..18303973 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At05chromosomeAt05:18301357..18301791 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10916supercontigscaffold10916:87367..87757 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10916supercontigscaffold10916:85287..85677 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9246supercontigscaffold9246:96954..97382 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9246supercontigscaffold9246:94766..95200 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:20900727..20901117 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:22411211..22411639 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:20899487..20899877 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:23097281..23097709 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:20780195..20780588 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:22904447..22904875 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:21181400..21181790 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:23249265..23249693 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:20851746..20852136 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:22643980..22644408 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:21400322..21400718 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:23697639..23698067 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:24918729..24919157 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:23335861..23336289 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:19403295..19403688 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:63221187..63221583 +Gossypium anomalum (B1) genome NSF_v1n/a
chr09chromosomechr09:17848400..17848787 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr09chromosomeChr09:20571793..20572177 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:16816960..16817350 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:14727427..14727817 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:17134702..17135089 -Gossypium lobatum (D7) genome ISU_v1n/a
F05chromosomeF05:19988155..19988588 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr05chromosomeChr05:106631350..106631746 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr09chromosomepAR0888:1..429 .
Chr09:19253342..19253735 -		n/a
Chr9chromosomepAR0888:1..429 .
Chr9:24518773..24519166 +		n/a
Germplasm
Stock NameType
T-25accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Pima S-7 x Empire, F2 (2007)AD_ch07_At.07N/A141.8pAR0888View
2AD-genome wide Reference Map (2009)AD_ch14_Dt.02N/A152pAR0888View
3AD-genome wide Reference Map (2009)AD_ch18_Dt.13N/A196pAR0888View
4AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A193pAR0888View
5TM-1 x WT-936, F2 (2005)AD_ch14_Dt.02N/A103.8pAR0888View
6CAMD-E x Seaberry, F2 (1998)AD_ch07_At.07N/A155.2pAR0888View
7AD-genome wide Reference Map (2009)AD_ch07_At.07N/A179pAR0888View
8TM-1 x WT-936, F2 (2005)AD_ch18_Dt.13N/A105.5pAR0888View
9Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch19_Dt.05N/A117.2pAR888View
10Guazuncho-2 x VH8-4602, consensus (2009)AD_ch19_Dt.05N/A100.55pAR888View
11Palmeri x K-101, F2 (2007)AD_ch07_At.07N/A192.6pAR888View
Sequence
>pAR0888 ID=pAR0888; Name=pAR0888; organism=Gossypium hirsutum; type=genetic_marker; length=429bp
CTAGCTAAACCCTTGTTTCAAACTACTCATTAAATTACTAATTATTGTAA
ATAAACAGAACAAACTAAAAGGAAGGTCTTGTTATGGACTGAATTACAAC
CGGTTGATGACTTCTTCATACTATAATTTCTCTCTTCACTTATCAGCATT
GTGAAAGTACTGAACTCATTTCTCTCTTTACTTATCAGCATTGTGAAAGT
ACTGAACTCATTTCTGATATAATCCTACCCGAATACGTCAAGCACTTGCG
CGGATCTCCATACGTTTCGCTCCAATGACACATCTCAGGCACTGATAATG
CTGATGTCATAGACGCTTCATGTTTCACGTTGCCATTGTCTTCATCATCA
TCATTGTCGTGATCAGTTTCTTCATCCAGTTCTTCAACTTTCTCAAATTC
CCCATATCCTTGAAAAAACTCCAGGTTTT