PXP1-47, PXP1-47 (genetic_marker) Gossypium barbadense

Marker Overview
NamePXP1-47
Genbank IDCA992608
TypeRFLP
SpeciesGossypium barbadense
GermplasmPima S-6
Source TypecDNA
Restriction EnzymeEcoRV
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA992608
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A06chromosomeA06:16568221..16568726 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018207.1chromosomeCM018207.1:15799062..15799573 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:11806116..11806628 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr10chromosomeAt_chr10:74560195..74560700 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A06chromosomeA06:15392709..15393214 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A06chromosomeGhir_A06:16843380..16843885 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A06chromosomeA06:16152777..16153282 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:16725359..16725864 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:16143649..16144154 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold2850supercontigscaffold2850:291584..292095 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2850supercontigscaffold2850:285685..286196 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A06chromosomeGbar_A06:15723287..15723798 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:15770676..15771187 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:16663238..16663743 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017641.1chromosomeCM017641.1:16156754..16157264 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017693.1chromosomeCM017693.1:16119242..16119752 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A06chromosomeA06:16883815..16884320 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:16513771..16514283 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:17244792..17245304 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_06chromosomeB_06:81447723..81448233 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:7250214..7250742 -Gossypium gossypioides (D6) genome ISU_v1n/a
F06chromosomeF06:14779930..14780441 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Pima S-6accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Pima S-7 x Empire, F2 (2007)AD_ch25_Dt.06N/A0PXP1-47View
2AD-genome wide Reference Map (2009)AD_ch25_Dt.06N/A49PXP1-47View
3AD-genome wide Reference Map (2009)AD_ch06_At.06N/A208PXP1-47View
4Sic'on x F-177, F2 (2004)AD_ch25_Dt.06N/A84.4PXP1-47View
5TM-1 x WT-936, F2 (2005)AD_ch06_At.06N/A43.1PXP1-47View
6Gtr x Gra, F2 (2004)D.06N/A37.5PXP1-47View
7Palmeri x K-101, F2 (2007)AD_ch25_Dt.06N/A77.5PXP1_47View
8PD 94042 x (AD)4-08, F2 (2016)AD_ch25_Dt.06N/A27.2pXP1_47View
Sequence
>PXP1-47 ID=PXP1-47; Name=PXP1-47; organism=Gossypium barbadense; type=genetic_marker; length=512bp
CTACATTGTTCTCTTCTTGTCAGAGCAGGTAATAATCAAGTGTGAACAAC
CAAATTTTATTTTAACAAGAAACTGTAAAACTTCAATCATGGATCATAAG
CCTTGCTTTTCACCCACTTATTTTTTGTTTCTAGCATTTCACCTTTTGGT
TCCTTCTTCCTTCTCCTTCCTTTTCCCCCTTTCCTCTTGTCATTGCCGGC
GCCGCTCTTCCTTTCCCAGGTTCTCCAGTCCCACCCACGCTTCTTCTCTC
CCCTCGCCCTTTTTTCTCTTTCTTTCGTTCTGGATGCTCCCTGTCCCTCC
CCGCCGGTTGTCTTACATTTCCCGGCTTGAGGGGTTTTTGTGTTCGGAAT
AATAGACTCTGTGTTTTGGGGCCCTGATGAATAGTTTTCTCTCAGTGGCT
CGTTTTCTCGATTCTTGAGTTTGAGTTGGATAGTTTGTTCTGCAACTGAT
TTTGAATGATTAAACCTTTGTTTCTTTGACGATAAAGAGTTACTCTTAAG
GGTAAATTCTAG