PXP4-65, PXP4-65 (genetic_marker) Gossypium barbadense

Marker Overview
NamePXP4-65
Genbank IDCK640640
TypeRFLP
SpeciesGossypium barbadense
GermplasmPima S-6
Source TypecDNA
Restriction EnzymeEcoRV
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCK640640
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:8190917..8191595 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:7444284..7444959 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:56425320..56425993 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_03chromosomeD10_03:57819065..57819741 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr5chromosomeDt_chr5:5643327..5644005 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:8016318..8016996 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:7791496..7792174 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:7479891..7480569 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:7827288..7827966 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:7770058..7770736 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold11445supercontigscaffold11445:38813..39488 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D02chromosomeGbar_D02:7949824..7950499 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:7452676..7453351 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:8203390..8204053 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:8477406..8478073 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:7863192..7863867 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:8054856..8055534 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:6966551..6967225 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr_05chromosomeChr_05:5885858..5886524 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:7879997..7880673 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:4682086..4682890 +Gossypium gossypioides (D6) genome ISU_v1n/a
E03chromosomeE03:10351612..10352285 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr05chromosomePXP4-65:1..676 .
Chr05:7068004..7068679 +		n/a
Chr5chromosomePXP4-65:1..676 .
Chr5:2635276..2635951 -		n/a
Germplasm
Stock NameType
Pima S-6accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Palmeri x K-101, F2 (2007)AD_ch02_At.02N/A63.2PXP4_65aView
2Palmeri x K-101, F2 (2007)AD_ch14_Dt.02N/A59.4PXP4_65bView
3Pima S-7 x im, F2 (2007)AD_ch02_At.02N/A12.6PXP4-65aView
4Pima S-7 x n2, F2 (2007)AD_ch02_At.02N/A23.2PXP4-65aView
5Pima S-7 x im, F2 (2007)AD_ch14_Dt.02N/A35.7PXP4-65bView
6Pima S-7 x n2, F2 (2007)AD_ch14_Dt.02N/A20.6PXP4-65bView
7AD-genome wide Reference Map (2009)AD_ch14_Dt.02N/A60pxp4-65View
8AD-genome wide Reference Map (2009)AD_ch02_At.02N/A143pxp4-65View
9TM-1 x WT-936, F2 (2005)AD_ch02_At.02N/A0pxp4-65View
Sequence
>PXP4-65 ID=PXP4-65; Name=PXP4-65; organism=Gossypium barbadense; type=genetic_marker; length=679bp
CCAATGCCACCGCAACAAAAATGGCTGCCGACCCTAAATACGCCGACGAT
CCGAAGACAATCTCGGGACTTAAAGGTTGCTATGAAATGTATGATGATGC
TTTGGATAATATGCAGAACGCCATGGACGCCATTCCAGTTCACGACATTG
GCACCATTGAAACCATGGTTAGTGCAGCCATTACGGATTATGGAACATGT
GACGATGGTTTTACGAGGCAGCCGAATCCAGTTCCTGATGGAGTTTCTCC
AATGGTGGATATCAATGAGAATCTTCAAAATATTGGTAGCATTATCCTTG
CCATTACTGATTTACTGCACTGATTTAATTTGCCCTTATATATATCTACA
AAGTATTGCAAGCACGGATCATGCAAAACGCGCCTTTTTTATTATTTCTA
TTTGGTATTTCAACTTATGAAATGTTATACAAATTACCTTAATACATTAA
GGGGTATTTGATTCATAAATATAACATTACAGCGGTAATATTACATTCTG
GAATGTGATTGCAGTGTTTGAATTTTCAACATTTCGACCATCCCATAATT
TGATCATCTTGTAGTATAGAATAAGATTATTACAGCCCATTCATTATCAT
ATCTNAGATTAAAGATGCAATCTTAAATTTTAGATCAATTTACCCTTTAT
TTTTATTATTCTAATCAATTTAGGCTCTC