PXP4-65, PXP4-65 (genetic_marker) Gossypium barbadense

Marker Overview


Name	PXP4-65
Genbank ID	CK640640
Type	RFLP
Species	Gossypium barbadense
Germplasm	Pima S-6
Source Type	cDNA
Restriction Enzyme	EcoRV
Publication	[view all]

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	CK640640

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D02	chromosome	D02:8190917..8191595 +
CM018216.1	chromosome	CM018216.1:7444284..7444959 +
D5_03	chromosome	D5_03:56425320..56425993 -
D10_03	chromosome	D10_03:57819065..57819741 -
Dt_chr5	chromosome	Dt_chr5:5643327..5644005 -
D02	chromosome	D02:8016318..8016996 +
Ghir_D02	chromosome	Ghir_D02:7791496..7792174 +
D02	chromosome	D02:7479891..7480569 +
D02	chromosome	D02:7827288..7827966 +
D02	chromosome	D02:7770058..7770736 +
scaffold11445	supercontig	scaffold11445:38813..39488 -
Gbar_D02	chromosome	Gbar_D02:7949824..7950499 +
D02	chromosome	D02:7452676..7453351 +
CM017624.1	chromosome	CM017624.1:8203390..8204053 +
CM017650.1	chromosome	CM017650.1:8477406..8478073 +
CM017702.1	chromosome	CM017702.1:7863192..7863867 +
D02	chromosome	D02:8054856..8055534 +
Chr03	chromosome	Chr03:6966551..6967225 +
Chr_05	chromosome	Chr_05:5885858..5886524 +
Chr05	chromosome	Chr05:7879997..7880673 +
Chr05	chromosome	Chr05:4682086..4682890 +
E03	chromosome	E03:10351612..10352285 +
Chr05	chromosome	PXP4-65:1..676 . Chr05:7068004..7068679 +
Chr5	chromosome	PXP4-65:1..676 . Chr5:2635276..2635951 -

Publications


Year	Publication
2004	Rong J, Abbey C, Bowers JE, Brubaker CL, Chang C, Chee PW, Delmonte TA, Ding X, Garza JJ, Marler BS, Park CH, Pierce GJ, Rainey KM, Rastogi VK, Schulze SR, Trolinder NL, Wendel JF, Wilkins TA, Williams-Coplin TD, Wing RA, Wright RJ, Zhao X, Zhu L, Paterson AH. A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium). Genetics. 2004 Jan; 166(1):389-417.

Germplasm


Stock Name	Type
Pima S-6	accession

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Palmeri x K-101, F2 (2007)	AD_ch02_At.02	N/A	63.2	PXP4_65a	View
2	Palmeri x K-101, F2 (2007)	AD_ch14_Dt.02	N/A	59.4	PXP4_65b	View
3	Pima S-7 x im, F2 (2007)	AD_ch02_At.02	N/A	12.6	PXP4-65a	View
4	Pima S-7 x n2, F2 (2007)	AD_ch02_At.02	N/A	23.2	PXP4-65a	View
5	Pima S-7 x im, F2 (2007)	AD_ch14_Dt.02	N/A	35.7	PXP4-65b	View
6	Pima S-7 x n2, F2 (2007)	AD_ch14_Dt.02	N/A	20.6	PXP4-65b	View
7	AD-genome wide Reference Map (2009)	AD_ch14_Dt.02	N/A	60	pxp4-65	View
8	AD-genome wide Reference Map (2009)	AD_ch02_At.02	N/A	143	pxp4-65	View
9	TM-1 x WT-936, F2 (2005)	AD_ch02_At.02	N/A	0	pxp4-65	View

Sequence

>PXP4-65 ID=PXP4-65; Name=PXP4-65; organism=Gossypium barbadense; type=genetic_marker; length=679bp
CCAATGCCACCGCAACAAAAATGGCTGCCGACCCTAAATACGCCGACGAT
CCGAAGACAATCTCGGGACTTAAAGGTTGCTATGAAATGTATGATGATGC
TTTGGATAATATGCAGAACGCCATGGACGCCATTCCAGTTCACGACATTG
GCACCATTGAAACCATGGTTAGTGCAGCCATTACGGATTATGGAACATGT
GACGATGGTTTTACGAGGCAGCCGAATCCAGTTCCTGATGGAGTTTCTCC
AATGGTGGATATCAATGAGAATCTTCAAAATATTGGTAGCATTATCCTTG
CCATTACTGATTTACTGCACTGATTTAATTTGCCCTTATATATATCTACA
AAGTATTGCAAGCACGGATCATGCAAAACGCGCCTTTTTTATTATTTCTA
TTTGGTATTTCAACTTATGAAATGTTATACAAATTACCTTAATACATTAA
GGGGTATTTGATTCATAAATATAACATTACAGCGGTAATATTACATTCTG
GAATGTGATTGCAGTGTTTGAATTTTCAACATTTCGACCATCCCATAATT
TGATCATCTTGTAGTATAGAATAAGATTATTACAGCCCATTCATTATCAT
ATCTNAGATTAAAGATGCAATCTTAAATTTTAGATCAATTTACCCTTTAT
TTTTATTATTCTAATCAATTTAGGCTCTC

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PXP4-65, PXP4-65 (genetic_marker) Gossypium barbadense