pAR0969, pAR0969 (genetic_marker) Gossypium hirsutum

Marker Overview
NamepAR0969
Genbank IDCA993620
TypeRFLP
SpeciesGossypium hirsutum
GermplasmT-25
Source TypecDNA
Restriction EnzymeEcoR1; Xho1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA993620
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:9667936..9668519 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:8818879..8819462 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:8890275..8890857 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr10chromosomeDt_chr10:20200637..20201220 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:8856679..8857262 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:9508260..9508843 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:9209840..9210423 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:9492831..9493414 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:8998393..8998976 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt06chromosomeDt06:8996020..8996603 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold515supercontigscaffold515:346067..346650 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D06chromosomeGbar_D06:8943075..8943658 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:8818706..8819289 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:9453702..9454285 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:9027190..9027773 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:9012797..9013380 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:9631702..9632285 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:8676001..8676584 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomepAR0969:1..415 .
Chr10:8787049..8787632 -		n/a
scaffold163supercontigpAR0969:1..415 .
scaffold163:419087..419670 +		n/a
Germplasm
Stock NameType
T-25accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CAMD-E x Seaberry, F2 (1998)AD_ch25_Dt.06N/A93.4pAR0969View
2Deltapine-61 x Seaberry, F2 (2000)AD_ch25_Dt.06N/A87pAR0969View
3AD-genome wide Reference Map (2009)AD_ch25_Dt.06N/A43pAR0969View
4AD-genome wide Reference Map (2009)AD_ch06_At.06N/A206pAR0969View
5Sic'on x F-177, F2 (2004)AD_ch25_Dt.06N/A69.9pAR0969View
6TM-1 x WT-936, F2 (2005)AD_ch06_At.06N/A25.7pAR0969View
7Pima S-7 x Empire, F2 (2007)AD_ch25_Dt.06N/A7.7pAR0969View
8Palmeri x K-101, F2 (2007)AD_ch25_Dt.06N/A66.6pAR969View
9PD 94042 x (AD)4-08, F2 (2016)AD_ch25_Dt.06N/A20.4pAR969aView
Sequence
>pAR0969 ID=pAR0969; Name=pAR0969; organism=Gossypium hirsutum; type=genetic_marker; length=422bp
AATAAAATTCAGCTGAATTATCAAAAAGAAAAATACAATTGAAAATTAAT
TTCCCAACTTTCACCTAGTATTCTCTAAATGAAAAAGAAAAGTTGATATG
TCCATGTTCAAAATTCACCTGAGAGTAAAAATATATTATATTAAATCCAC
GCAACAAGGGGCTTCCCCTTGAAATCAAAAGAAAAAGAAAAGTTGCCTAA
AAATGAGATTGGAAAAACACTCATTCCATGAAATCATCCTTATCATCCAC
GGGAATTGGTCGGTTCCTCCAAAACACAGCAAGGCCACTCCCTCCCAGCG
CCATGCAAACAACACTAACTGCAGAAGGAACAGCTACTAAGGGATTGGTG
AAATGTTTCTGGGCAAGCAAGAAACCAAGTGCTGAACTCTGCATTCCACA
TTCTATGGATATGGTCTCGTGC