G1129, G1129 (genetic_marker) Gossypium raimondii

Marker Overview
NameG1129
Genbank IDCA994233
TypeRFLP
SpeciesGossypium raimondii
Source TypecDNA
Restriction EnzymePst1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA994233
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:66775308..66776492 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A03chromosomeA03:103568382..103569566 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:101465966..101467150 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018216.1chromosomeCM018216.1:62928153..62929338 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:4027751..4028934 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:130965851..130967036 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_03chromosomeD10_03:3984233..3985414 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016616.1chromosomeCM016616.1:5460108..5461276 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr12chromosomeDt_chr12:29462319..29463503 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold3130.1supercontigscaffold3130.1:121215..122399 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold734_A03supercontigscaffold734_A03:94318..95502 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D02chromosomeD02:63927505..63928689 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:65662002..65663186 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:108199227..108200411 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:65710127..65711311 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:106980250..106981434 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:66972487..66973671 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:105284055..105285239 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:64085079..64086263 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A03chromosomeA03:100559808..100560992 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt02chromosomeDt02:66372932..66374117 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8166supercontigscaffold8166:206593..207777 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5239supercontigscaffold5239:94831..96016 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D02chromosomeGbar_D02:63526082..63527267 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:100602315..100603499 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:64801712..64802897 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A03chromosomeA03:102952273..102953457 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:65870801..65871986 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017612.1chromosomeCM017612.1:102205555..102206739 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:67499428..67500612 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:109386543..109387726 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:64413203..64414388 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017690.1chromosomeCM017690.1:103365477..103366661 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:67955324..67956508 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A03chromosomeA03:108882206..108883390 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:4697191..4698361 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:4726933..4728118 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:59065141..59066324 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_03chromosomeB_03:4997042..4998224 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:62118551..62119734 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:46829424..46830606 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_05chromosomeChr_05:40428873..40430055 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:63572552..63573733 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:40839834..40841015 -Gossypium aridum (D4) genome ISU_v1n/a
Chr05_3471637chromosomeChr05_3471637:2775..3947 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr05chromosomeChr05:42550870..42552051 -Gossypium lobatum (D7) genome ISU_v1n/a
E03chromosomeE03:120565169..120566352 -Gossypium stocksii (E1) genome NSF_v1n/a
F03chromosomeF03:106125218..106126400 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr05chromosomeG1129:1..1184 .
Chr05:60168857..60170040 -		n/a
Chr5chromosomeG1129:1..1184 .
Chr5:37414044..37415227 +		n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Palmeri x K-101, F2 (2007)AD_ch14_Dt.02N/A113.9G1129bView
2Pima S-7 x Empire, F2 (2007)AD_ch14_Dt.02N/A0G1129bView
3Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch14_Dt.02N/A148.5G1129bView
4Guazuncho-2 x VH8-4602, consensus (2009)AD_ch14_Dt.02N/A95.39G1129View
5AD-genome wide Reference Map (2009)AD_ch14_Dt.02N/A182G1129View
6AD-genome wide Reference Map (2009)AD_ch03_At.03N/A180G1129View
7Palmeri x K-101, F2 (2007)AD_ch03_At.03N/A129.5G1129aView
8Pima S-7 x Empire, F2 (2007)AD_ch03_At.03N/A0G1129aView
Sequence
>G1129 ID=G1129; Name=G1129; organism=Gossypium raimondii; type=genetic_marker; length=1184bp
AACCTGCAACAGCATTTGAAACGGATCTTTGGAGGGTTATTGCCACAAGG
ACGACCGGATCTTCCGAACTAGTAAGTTGTCAGGCACTCAATATCTAGCG
CCACTGTTGGACTACTTAGGGATCTAAGTTTCAACTTTCCGAAAATTATT
TGGTTGCCCTTATTTGTTTCACTAGATCTGTTGATTTTACAAGCGGCACA
CTGAAATTGGGATTTATGTAAGTTATAACCTTTACTCTTGTATCCTTGTA
TAATATAAAGCAAAGGAATTCTCTTGAACTGGAAAACAAGTGCCTGTTGT
TTATCTTACCTTGATTTCACGGCTCCTTTAAGTGACGGTACAATATTCAG
TATTCTTGTGACTTGGCAATTGATCTTTCTAGTGGCCCACGTATTTAGCC
ACATTTGTAGTTCGAAATTATGCATACGCCTGTATTAAGCCCAGTTTATG
CAACACATTGAAAAGAACCACCAGATAATGGATATTGTAATTCCTGTAGA
ATAGCTTAAGTTACAAATAGGATTCCTGCAAATAACATAAAGGATTATAA
GAAAGATTTATAGCCAACCAATATTTAACACTTGAATATCATCAGTCCAA
GGGATCCAACTTACATGGCACTGGTAATTTTATTATTTTACACAATGATT
ATACCATGAGATGGCATGGCCGGTGAAACACACCATATTTTTTAAATTTT
ATTTTAGACAGTTAAAAAGGGGTTTTCCCTTGGAGAAAAGTTTTTCCAGC
CTCCATGATGCTTCTATGATGTGCTTTCTTTTCCCAAAAGCACTGATTCT
GATATACTCTCCACCACCAGGGCCAAAACCAGATCCTGGTACCGTTATTA
TATGAGTCTTTTCAAGAATTTCTGCAAATATATTCCATGATTTTGAACCA
GGAAAATGCACCCAAACATACGGGGCGTTGACACCGCCATAAACTTCTAA
GCCAAGAGAGGCAAACGTATCTACCAATATCTTTGCATTCTCCTTGTAGT
AGTCGATCACTGCACAGATAGCCTGAGAATCATAAAAAATACAAATTCAG
CAGTCCTCTAGAATACTCAATCATAGAGCAGTTAAAAGAGTATAGATTGT
ATTTTGTTAGAGTTGCATGCCAAAATAATGTTCTTTCACCAACTGTTGTT
TCTTCCTCAAAGGTTTTGCTCAAATCAGAGTCGA