P01-03, P01-03 (genetic_marker) Gossypium hirsutum

Marker Overview
NameP01-03
Genbank IDCA994300
TypeRFLP
SpeciesGossypium hirsutum
GermplasmTM-1
Source TypecDNA
Restriction EnzymePst1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA994300
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A13chromosomeA13:776415..777000 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018214.1chromosomeCM018214.1:674410..674992 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:707180..707765 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016618.1chromosomeCM016618.1:96556732..96557309 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr9chromosomeAt_chr9:55394153..55394738 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A13chromosomeA13:571530..572115 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A13chromosomeGhir_A13:534851..535436 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A13chromosomeA13:760742..761327 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:795481..796066 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:619232..619817 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold3562supercontigscaffold3562:86945..87527 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A13chromosomeGbar_A13:705374..705956 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:678850..679432 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:759531..760114 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017648.1chromosomeCM017648.1:696086..696670 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017700.1chromosomeCM017700.1:513903..514485 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A13chromosomeA13:787170..787755 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:677255..677840 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:725323..725908 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
E13chromosomeE13:916358..916937 +Gossypium stocksii (E1) genome NSF_v1n/a
Germplasm
Stock NameType
TM-1accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Gtr x Gra, F2 (2004)D.01N/A65.3P01-03View
2AD-genome wide Reference Map (2009)AD_ch01_At.01N/A116P01-03View
3TM-1 x WT-936, F2 (2005)AD_ch01_At.01N/A65.1P01-03View
4AD-genome wide Reference Map (2009)AD_ch15_Dt.01N/A80P01-03View
5Palmeri x K-101, F2 (2007)AD_ch15_Dt.01N/A77.6P01_03View
Sequence
>P01-03 ID=P01-03; Name=P01-03; organism=Gossypium hirsutum; type=genetic_marker; length=593bp
AAAATTAAAAAAACCAGACAGCCTATGATTCTGTAATAATTGTATGTACA
TTATATAACCATAAAAACTAACTGATCTAAAAATTGGGAAAAATATTTTT
TTTTTTAAATCTATACCAAAAAATGAAGAACAAATTCGTATAAGTGGCAG
CTAGTTGTTGATGTCGTTGATTCCTTTGCTAGGTGCAGAAGGTGGTATCG
GTACTCCCTTGGGAAGCATGCTGAAGATCATCGGACCATATTTTCCTGCG
AGTCTTTGAGTCGGAGACTTAAGGATTCCGACGTGGGGTTTCTTCATGGG
AACCATATGAATATCACATGGCTGAGGTTGAGGCTCAGGGTCTTGTTTCG
ATACGTCGAGAACGACGTCGGTTTTGTGGTCTTCGACTTCGACGAGATCG
GCTAAAGCAAGGTCCAAGGTTGTCTCCGTGGTGGACGGCGGCGAGTCGCT
CAAGAGCCTGGCGGAAGATGGCGATGTAGAGATGGTGAAGATGAAGAATA
AGAGGAGCACGGCCGCGAGGTATTTGGATTTATAGAAGGTAGCCATTAAT
GGACAATTGTTGGAGGATTAATTTGAAAGTTTTTTTCTCGTGC