P01-03, P01-03 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	P01-03
Genbank ID	CA994300
Type	RFLP
Species	Gossypium hirsutum
Germplasm	TM-1
Source Type	cDNA
Restriction Enzyme	Pst1
Publication	[view all]

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	CA994300

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A13	chromosome	A13:776415..777000 +
CM018214.1	chromosome	CM018214.1:674410..674992 +
Chr13_CRI-A2_v1.0.a1	chromosome	Chr13_CRI-A2_v1.0.a1:707180..707765 +
CM016618.1	chromosome	CM016618.1:96556732..96557309 -
At_chr9	chromosome	At_chr9:55394153..55394738 +
A13	chromosome	A13:571530..572115 +
Ghir_A13	chromosome	Ghir_A13:534851..535436 +
A13	chromosome	A13:760742..761327 +
A13	chromosome	A13:795481..796066 +
A13	chromosome	A13:619232..619817 +
scaffold3562	supercontig	scaffold3562:86945..87527 -
Gbar_A13	chromosome	Gbar_A13:705374..705956 +
A13	chromosome	A13:678850..679432 +
CM017622.1	chromosome	CM017622.1:759531..760114 +
CM017648.1	chromosome	CM017648.1:696086..696670 +
CM017700.1	chromosome	CM017700.1:513903..514485 +
A13	chromosome	A13:787170..787755 +
Chr13	chromosome	Chr13:677255..677840 +
Chr13	chromosome	Chr13:725323..725908 +
E13	chromosome	E13:916358..916937 +

Publications


Year	Publication
2004	Rong J, Abbey C, Bowers JE, Brubaker CL, Chang C, Chee PW, Delmonte TA, Ding X, Garza JJ, Marler BS, Park CH, Pierce GJ, Rainey KM, Rastogi VK, Schulze SR, Trolinder NL, Wendel JF, Wilkins TA, Williams-Coplin TD, Wing RA, Wright RJ, Zhao X, Zhu L, Paterson AH. A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium). Genetics. 2004 Jan; 166(1):389-417.

Germplasm


Stock Name	Type
TM-1	accession

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Gtr x Gra, F2 (2004)	D.01	N/A	65.3	P01-03	View
2	AD-genome wide Reference Map (2009)	AD_ch01_At.01	N/A	116	P01-03	View
3	TM-1 x WT-936, F2 (2005)	AD_ch01_At.01	N/A	65.1	P01-03	View
4	AD-genome wide Reference Map (2009)	AD_ch15_Dt.01	N/A	80	P01-03	View
5	Palmeri x K-101, F2 (2007)	AD_ch15_Dt.01	N/A	77.6	P01_03	View

Sequence

>P01-03 ID=P01-03; Name=P01-03; organism=Gossypium hirsutum; type=genetic_marker; length=593bp
AAAATTAAAAAAACCAGACAGCCTATGATTCTGTAATAATTGTATGTACA
TTATATAACCATAAAAACTAACTGATCTAAAAATTGGGAAAAATATTTTT
TTTTTTAAATCTATACCAAAAAATGAAGAACAAATTCGTATAAGTGGCAG
CTAGTTGTTGATGTCGTTGATTCCTTTGCTAGGTGCAGAAGGTGGTATCG
GTACTCCCTTGGGAAGCATGCTGAAGATCATCGGACCATATTTTCCTGCG
AGTCTTTGAGTCGGAGACTTAAGGATTCCGACGTGGGGTTTCTTCATGGG
AACCATATGAATATCACATGGCTGAGGTTGAGGCTCAGGGTCTTGTTTCG
ATACGTCGAGAACGACGTCGGTTTTGTGGTCTTCGACTTCGACGAGATCG
GCTAAAGCAAGGTCCAAGGTTGTCTCCGTGGTGGACGGCGGCGAGTCGCT
CAAGAGCCTGGCGGAAGATGGCGATGTAGAGATGGTGAAGATGAAGAATA
AGAGGAGCACGGCCGCGAGGTATTTGGATTTATAGAAGGTAGCCATTAAT
GGACAATTGTTGGAGGATTAATTTGAAAGTTTTTTTCTCGTGC

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P01-03, P01-03 (genetic_marker) Gossypium hirsutum