PGML0140, PGML0140 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0140
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(ATT)9
Primer 1PGML0140_F: CCCACGGTCAGACCTGAAT
Primer 2PGML0140_R: TGGATGATAAGGAGGATGGTG
Product Length313
Publication[view all]
CommentBAC_ID=FITB6558.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:24012163..24012475 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:22731781..22732090 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:39896016..39896340 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr11chromosomeDt_chr11:21743602..21743914 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:22765116..22765428 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:22869934..22870245 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:22239102..22239414 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:23030102..23030414 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:23004186..23004498 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:22555622..22555931 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:22949942..22950251 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:22556464..22556734 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:23049123..23049464 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:23148932..23149261 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:23156686..23156998 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:22284244..22284565 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11_5132779chromosomeChr11_5132779:2479..2863 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch20_Dt.10N/A68.7PGML0140View
Sequence
>PGML0140 ID=PGML0140; Name=PGML0140; organism=Gossypium raimondii; type=genetic_marker; length=313bp
CCCACGGTCAGACCTGAATTCAGTATTAATTGAAATACACTCAAATTGTT
AAATTGTGCTGAAATCTTAAGTGAAATGGAACTTAGACTACATAATTATT
ATTATTATTATTATTATTATTGAAGGGTAAAAGTGCCAAAATTAGAGGGT
TATATTTTTTACTAAGCTTGTGACTAGTGTGTTTGAATAGAGTTTTGATA
AATAAACTTATCATATGATGGGTTTTAGGTCTGATTAATTCAATTGATTA
AAATCCAATCTTTTATTTGGAACTATTTCAATCTCTCAGACTCACCATCC
TCCTTATCATCCA