CottonGen activities at 2018 Beltwide and PAG Conferences (12/17)

2018 Cotton Beltwide Conference, Jan 3-5, San Antonio, TX

  • Cotton Improvement Oral Session II - Thursday, Jan 4, Salon I
    • 2.10 PM - Using CottonGen for Crop Improvement
       
  • Cotton Improvement Poster Session - Thursday, Jan 4, Salon E, 4.00 - 5.00 PM
    • Using CottonGen for Crop Improvement  - Poster #74
       

2018 Plant and Animal Genome Conference, Jan 13-17, San Diego, CA

Cotton Cluster File Request

Submitted by Anonymous (not verified) on Fri, 12/22/2017 - 05:47
Name: 
Marc Giband
Email Address: 
marc.giband@cirad.fr
Email Address: 
marc.giband@cirad.fr
Organization: 
Cirad
Acknowledgement: 
1
Acknowledgement4: 
1

ICGI Workshop at PAG 2018 Jan 14, San Diego (12/14/17)

ICGI Workshop at PAG 2018 has been scheduled on Sunday Jan 14, 2018, San Diego, California, USA.  Click HERE to view detailed information.

Project Information

Background: High-throughput genotyping platforms play important roles in plant genomic studies. Cotton (Gossypium spp.) is the world’s important natural textile fiber and oil crop. Upland cotton accounts for more than 90% of the world’s cotton production, however, modern upland cotton cultivars have narrow genetic diversity. The amounts of genomic sequencing and re-sequencing data released make it possible to develop a high-quality single nucleotide polymorphism (SNP) array for intraspecific genotyping detection in cotton.

G. hirsutum JGI genome (26 chrom. and 5,329 scaffolds)

Human-Readable NameG. hirsutum JGI genome (26 chrom. and 5,329 scaffolds)
Database Path/mainlab/web/temp/db/cottongen/Ghirsutum_458_v1.0.fa
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseG. hirsutum Tx-JGI v1.1 JBrowse
RegEx/^(\S+).*/
Link-out Typejbrowse

-- G. hirsutum JGI CDS (87,800)

Human-Readable Name-- G. hirsutum JGI CDS (87,800)
Database Path/mainlab/web/temp/db/cottongen/Ghirsutum_458_v1.1.cds.fa
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. hirsutum JGI proteins (87,800)

Human-Readable Name-- G. hirsutum JGI proteins (87,800)
Database Path/mainlab/web/temp/db/cottongen/Ghirsutum_458_v1.1.protein.fa
Database Typeprotein
FASTA Header Formatcustom
External DatabaseCottonGen Database
RegEx/^(\S+)\.p.*/
Link-out Typelink