6425 biotic stress trait scores from RBTN available (12/17/19)

6425 new trait scores of biotic stress (fusarium wilt, target leaf spot, bacterial blight, tarnished plant bug, tobacco budworm) and morphological traits from RBTN (US Regional Breeders Testing Network) added.  These data can be browsed from Search Trait Descriptors and searchable from Search Trait Evaluation.

G. barbadense HGS_v1.1 Genome (26 chrom. and 4,748 scaffolds)

Human-Readable NameG. barbadense HGS_v1.1 Genome (26 chrom. and 4,748 scaffolds)
Database Path/mainlab/web/temp/db/cottongen/G.barbadense_HGS-AD2_v1.1_genome.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for AD2_HGS_v1.1
RegEx/^(\S+).*/
Link-out Typejbrowse

-- G. barbadense HGS_v1.1 CDs (108,363)

Human-Readable Name-- G. barbadense HGS_v1.1 CDs (108,363)
Database Path/mainlab/web/temp/db/cottongen/G.barbadense_HGS-AD2_v1.1.cds.fas
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. barbadense HGS_v1.1 proteins (108,363)

Human-Readable Name-- G. barbadense HGS_v1.1 proteins (108,363)
Database Path/mainlab/web/temp/db/cottongen/G.barbadense_HGS-AD2_v1.1.pep.faa
Database Typeprotein
FASTA Header Formatdefault
External DatabaseJBrowse for AD2_HGS_v1.1
RegEx/^(\S+).*/
Link-out Typejbrowse

Cotton Cluster File Request

Submitted by Anonymous (not verified) on Thu, 11/14/2019 - 04:28
Name: 
Joellen Hackney
Email Address: 
Hohenweg 68
Email Address: 
Hohenweg 68
Organization: 
Hackney & Hackney AG
Acknowledgement: 
0
Acknowledgement4: 
0

Whole genome sequences of AD4 and G2 available (11/5/19)

Gossypium mustelinum (AD4) and Gossypium australe (G2) genome sequences were recently added.

New germplasm, pedigrees and descriptions available (10/19)

1956 new germplasm, 1648 new pedigrees, and 1700 germplasm descriptions added to CottonGen recently.

2018 Regional Breeders Trial Fiber Quality Data available (10/19)

5,040 new fiber trait scores (24 verities were tested at 14 different locations for 15 fiber quality traits) from 2018 Regional Breeders Testing Network (RBTN) available. 

G. australe CRI_v1.1 Genome (13 chrom. and 551 scaffolds)

Human-Readable NameG. australe CRI_v1.1 Genome (13 chrom. and 551 scaffolds)
Database Path/mainlab/web/temp/db/cottongen/G.australe_CRI-G2_v1.1_genome.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for G2_CRI_v1.1
RegEx/^(\S+).*/
Link-out Typejbrowse

-- G. australe CRI_v1.1 CDs (38,281)

Human-Readable Name-- G. australe CRI_v1.1 CDs (38,281)
Database Path/mainlab/web/temp/db/cottongen/G.australe_CRI-G2_v1.1.cds.fas
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for G2_CRI_v1.1
RegEx/^(\S+).*/
Link-out Typejbrowse