G. mustelinum JGI_v1.1 Genome (26 chrom. and 2,146 scaffolds)

Human-Readable NameG. mustelinum JGI_v1.1 Genome (26 chrom. and 2,146 scaffolds)
Database Path/mainlab/web/temp/db/cottongen/G.mustelinum_JGI-AD4_v1.1_genome.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for Gm_JGI-AD4_v1.1
RegEx/^(\S+).*/
Link-out Typejbrowse

-- G. mustelinum JGI_v1.1 CDs (106,487)

Human-Readable Name-- G. mustelinum JGI_v1.1 CDs (106,487)
Database Path/mainlab/web/temp/db/cottongen/G.mustelinum_JGI-AD4_v1.1.cds.fas
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for Gm_JGI-AD4_v1.1
RegEx/^(\S+).*/
Link-out Typejbrowse

-- G. mustelinum JGI_v1.1 proteins (106,487)

Human-Readable Name-- G. mustelinum JGI_v1.1 proteins (106,487)
Database Path/mainlab/web/temp/db/cottongen/G.mustelinum_JGI-AD4_v1.1.pep.faa
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

About the assembly

The Gossypium australe PA1801(G2-lz) genome was sequenced and assembled with a combination of four technologies: Pacbio single-molecule real-time (SMRT) sequencing, paired-end sequencing, optical mapping (DLS) and Illumina short-read Hi-C. Assembly with these complementary data types proceeded in a stepwise fashion, producing progressively improved assemblies [more]

Resource Titles: 
Assembly
Genes
Downloads
Resource Blocks: 

The chromosomes (pseudomolecules) and scaffolds for G. australe genome. These files belong to the CRI-G2 Assembly v1.1

Chromosomes & scaffolds (FASTA format) G.australe_CRI-G2_assembly_v1.1.fasta.gz

The predicted gene model, their alignments and proteins for G. australe genome. These files belong to the CRI-G2 Assembly 1.1

Predicted gene models with exons (GFF3 format) G.australe_CRI-G2_v1.1_functional.gff.gz
Coding sequences, CDS (FASTA format) G.australe_CRI-G2_v1.1_cds.fasta.gz
Protein sequences (FASTA format) G.australe_CRI-G2_v1.1_pep.fasta.gz
mRNA sequences (FASTA format) G.australe_CRI-G2_v1.1_mRNA.fasta.gz

All annotation files are available for download by selecting the desired data type in the left-hand "Resources" side bar.  Each data type page will provide a description of the available files and links do download.  Alternatively, you can use the FTP repository for bulk download.

G. hirsutum TM1-CRI v1.0 Genome (26 chrom. and 584 scaffolds)

Human-Readable NameG. hirsutum TM1-CRI v1.0 Genome (26 chrom. and 584 scaffolds)
Database Path/mainlab/web/temp/db/cottongen/G.hirsutum_CRI_TM1-v1.fa
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for Gh_ZM24_CRI_v1
RegEx/^(\S+).*/
Link-out Typejbrowse

-- G. hirsutum TM1-CRI v1.0 proteins (79,703)

Human-Readable Name-- G. hirsutum TM1-CRI v1.0 proteins (79,703)
Database Path/mainlab/web/temp/db/cottongen/G.hirsutum_CRI_TM1-v1.pep.faa
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. hirsutum TM1-CRI v1.0 CDs (79,703)

Human-Readable Name-- G. hirsutum TM1-CRI v1.0 CDs (79,703)
Database Path/mainlab/web/temp/db/cottongen/G.hirsutum_CRI_TM1-v1.cds.fas
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink