About the assembly

The new assembly of Gossypium hirsutum genome (genetic standard line TM-1) was released from the Institute for Advanced Studies, Wuhan University, Wuhan, China (IAS-WHU). The assembly were sequenced using high-depth SMRT long reads resulting in 81.6-fold genome coverage (~205 Gb). The genome assembly was corrected by using accurate Illumina paired-end reads. The resulting assembled genome size was 2,290 Mb with 99.17% of all sequences anchored on 26 chromosomes (A-subgenome, 1,449 Mb; D-subgenome, 822 Mb). The N50 of the new assemble... [more]

Resource Titles: 
Assembly
Genes
Downloads
Resource Blocks: 

The chromosomes (pseudomolecules) and scaffolds for Gossypium hirsutum (AD1) 'TM1' genome. These files belong to the WHU Updated Assembly v1.0

Chromosomes & scaffolds (FASTA format) Ghirsutum_TM-1_WHU_standard.genome.fa.gz
Transposable Elements (GFF format) Ghirsutum_TM-1_WHU_transposableElements.CHRplus.gff.gz

The predicted gene model, their alignments and proteins for Gossypium hirsutum (AD1) 'TM1' genome. These files belong to the WHU Assembly v1.0

Predicted gene models with exons (GFF3 format) Ghirsutum_TM-1_WHU_standard.gene.gff3.gz
Coding sequences, CDS (FASTA format) Ghirsutum_TM-1_WHU_standard.gene.cds.fa.gz
Protein sequences (FASTA format) Ghirsutum_TM-1_WHU_standard.gene.pep.fa.gz

All annotation files are available for download by selecting the desired data type in the left-hand "Resources" side bar.  Each data type page will provide a description of the available files and links do download.  Alternatively, you can use the FTP repository for bulk download.

About the assembly

The new assembly of Gossypium arboreum genome (cultivar Shi Xi Ya 1) was released from the Institute for Advanced Studies, Wuhan University, Wuhan, China (IAS-WHU). The assembly were sequenced using high-depth SMRT long reads resulting in 177-fold genome coverage (~310 Gb). The genome assembly was corrected by using accurate Illumina paired-end reads. Finally, 92.18% of total contigs spanning 1,509 Mb were categorized and ordered into 13 chromosome-scale scaffolds using Hi-C data. Compared with first draft genome of G. arboreum in 2014... [more]

Resource Titles: 
Assembly
Genes
Downloads
Resource Blocks: 

The chromosomes (pseudomolecules) and scaffolds for Gossypium arboreum (A2) 'Shixiya1' genome. These files belong to the WHU Updated Assembly v1.0

Chromosomes & scaffolds (FASTA format) Garboreum_Shixiya1_WHUv3.0rc.genome.standard.fa.gz
Transposable Elements (GFF format) Garboreum_Shixiya1_WHUv3.0rc.transposableElements.gff.gz

The predicted gene model, their alignments and proteins for Gossypium arboreum (A2) 'Shi Xi Ya 1' genome. These files belong to the WHU Assembly v1.0

Predicted gene models with exons (GFF3 format) Garboreum_Shixiya1_WHUv3.0rc.gene.standard.gff3.gz
Coding sequences, CDS (FASTA format) Garboreum_Shixiya1_WHUv3.0rc.gene.cds.standard.fa.gz
Protein sequences (FASTA format) Garboreum_Shixiya1_WHUv3.0rc.gene.pep.standard.fa.gz

All annotation files are available for download by selecting the desired data type in the left-hand "Resources" side bar.  Each data type page will provide a description of the available files and links do download.  Alternatively, you can use the FTP repository for bulk download.

About the assembly

The first assembly of Gossypium herbaceum genome (variety africanum Mutema, A1-0076) was released from the Institute for Advanced Studies, Wuhan University, Wuhan, China (IAS-WHU). The assembly was generated by ~225 Gb PacBio single-molecule real-time (SMRT) long reads (the N50 of these reads was 13 kb) with 138-fold genome coverage. The assembly captured 1,556 Mb of genome sequences, consisting of 1,781 contigs with the N50 of these contigs reaching up to 1,915 kb. The assemblies were also corrected by using highly accurate Illumina p... [more]

Resource Titles: 
Assembly
Genes
Downloads
Resource Blocks: 

The chromosomes (pseudomolecules) and scaffolds for Gossypium herbaceum (A1) 'Mutema (A1-076)' genome. These files belong to the WHU Assembly v1.0

Chromosomes & scaffolds (FASTA format) Gherbaceum_A1-0076_WHUv3.0rc.genome.standard.fa.gz
Transposable Elements (GFF format) Gherbaceum_A1-0076_WHUv3.0rc.transposableElements.gff.gz

The predicted gene model, their alignments and proteins for Gossypium herbaceum (A1) 'Mutema (A1-076)' genome. These files belong to the WHU Assembly v1.0

Predicted gene models with exons (GFF3 format) Gherbaceum_A1-0076_WHUv3.0rc.gene.standard.gff3.gz
Coding sequences, CDS (FASTA format) Gherbaceum_A1-0076_WHUv3.0rc.gene.cds.standard.fa.gz
Protein sequences (FASTA format) Gherbaceum_A1-0076_WHUv3.0rc.gene.pep.standard.fa.gz

All annotation files are available for download by selecting the desired data type in the left-hand "Resources" side bar.  Each data type page will provide a description of the available files and links do download.  Alternatively, you can use the FTP repository for bulk download.

Postpone holding 2020 ICGI Research Conference (3/25/20)

Greetings to All ICGI members!

We hope everyone is going well.

I am sorry. After ICGI Steering Committee voted and discussed with the local organizer, we have to make a difficult determination to postpone holding our 2020 International Cotton Genome Initiative (ICGI) Research Conference (originally to be held in August 3-6, 2020) at the Robert H. Smith Faculty of Agriculture, Food and Environment, Rehovot, Israel due to the present epidemic condition. When will we hold the conference remains to be determined depending on epidemic condition.

Sincerely,

370 QTLs from publications available (3/20)

370 QTLs (282 associated quality, yield or yield component traits) added and searchable at CottonGen. Go to www.cottongen.org/find/qtl, select 'QTL' then 'Search' to view all available QTLs. Or search QTLs by any combination of species, trait category, trait name, published symbol or label.

Cotton Cluster File Request

Name: 
Clemmie Bromilow
Email Address: 
Adalstraeti 82
Email Address: 
Adalstraeti 82
Organization: 
Comicanimation http://www.Comicanimation.online mbH
Acknowledgement: 
0
Acknowledgement4: 
0

Cotton Cluster File Request

Name: 
Murray Wanliss
Email Address: 
Ul. Dubois Stanislawa 28
Email Address: 
Ul. Dubois Stanislawa 28
Organization: 
Kiswasolutions http://Www.Kiswasolutions.net/apa-kelebihan-yang-tidak-dikatakan-tentang-poker-dan-apa-artinya-bagi-anda/ & Murray GmbH
Acknowledgement: 
0
Acknowledgement4: 
0

Cotton Cluster File Request

Name: 
Harriet Paz
Email Address: 
Hundbergsvagen 96
Email Address: 
Hundbergsvagen 96
Organization: 
Socool 360 http://www.Socool360.com/ Harriet GmbH
Acknowledgement: 
0
Acknowledgement4: 
0

Cotton Cluster File Request

Name: 
Robin Rupp
Email Address: 
44 Glenurquhart Road
Email Address: 
44 Glenurquhart Road
Organization: 
Robin Rupp mbH
Acknowledgement: 
0
Acknowledgement4: 
0