Gossypium hirsutum - NCBI SRA datasets

RNA Datasets (as of 2/18/2016)

Organism Name Study Accession Cultivar Instrument Reference
Gossypium hirsutum SRP039385 NMGA-062
NMGA-105
Illumina HiSeq 2000  
Gossypium hirsutum SRP068118

DP5690

Li1

Li2

Illumina Genome Analyzer Unpublished, USDA-ARS
Gossypium hirsutum SRP055709

Barbaren713 RN

DP90

SG747

LONREN1 RN

Illumina Genome Analyzer IIx

Illumina Genome Analyzer II

Li et al. 2015
Gossypium hirsutum SRP055046 Unspecified Illumina HiSeq 2000 Bedre et al. 2015
Gossypium hirsutum SRP052863 Li2-DP5690 Illumina Genome Analyzer Naoumkina et al. 2015
Gossypium hirsutum SRP052863 DP5690 Illumina Genome Analyzer Thyssen et al. 2015
Gossypium hirsutum SRP050874 Unspecified Illumina HiSeq 2000 Unpublished, Clemson University
Gossypium hirsutum SRP049806 TM-1 Illumina HiSeq 2000 Unpublished, CAAS
Gossypium hirsutum SRP049798 T582 Illumina HiSeq 2000 Unpublished, CAAS
Gossypium hirsutum SRP049797 L7XW Illumina HiSeq 2000 Unpublished, CAAS
Gossypium hirsutum SRP049795 L7 Illumina HiSeq 2000 Unpublished, CAAS
Gossypium hirsutum SRP049794 Z17YW Illumina HiSeq 2000 Unpublished, CAAS
Gossypium hirsutum SRP049791 Z12XW Illumina HiSeq 2000 Unpublished, CAAS
Gossypium hirsutum SRP049790 Z12YW Illumina HiSeq 2000 Unpublished, CAAS
Gossypium hirsutum SRP049786 Z12 Illumina HiSeq 2000 Unpublished, CAAS
Gossypium hirsutum SRP049434

TM-1

H1

Illumina HiSeq 2500 Ma et al. 2016
Gossypium hirsutum SRP049330 Unspecified Illumina HiSeq 2000 Tuttle et al. 2015
Gossypium hirsutum SRP049273 Unspecified Illumina HiSeq 2000 Unpublished, CAAS
Gossypium hirsutum SRP049272 Unspecified Illumina HiSeq 2000 Unpublished, CAAS
Gossypium hirsutum SRP047510 Unspecified Illumina HiSeq 2500 Song et al. 2015
Gossypium hirsutum SRP047509 Unspecified Illumina HiSeq 2500 Song et al. 2015
Gossypium hirsutum SRP047139

CSIL-35368

CSIL-31044

CSIL-31068

CSIL-31134

CSIL-35431

TM-1

Illumina HiSeq 2000 Fang et al. 2014
Gossypium hirsutum SRP045952 Unspecified Illumina HiSeq 2000 Unpublished, BGI
Gossypium hirsutum SRP044705 TM-1 Illumina HiSeq 2000 Unpublished, Nanjing Agricultural University
Gossypium hirsutum SRP044705 TM-1 (Texas Marker-1) Illumina HiSeq 2000 Wang et al. 2015
Gossypium hirsutum SRP042128 JA-CMS Illumina HiSeq 2000 Yang et al. 2014
Gossypium hirsutum SRP041472 BRS Illumina HiSeq 2000 Unpublished, UFRJ
Gossypium hirsutum SRP041153 Unspecified Illumina HiSeq 2000 Zhang et al. 2014
Gossypium hirsutum SRP034743 Unspecified Illumina HiSeq 2000 Unpublished, Northwest Agriculture & Forestry University
Gossypium hirsutum SRP033354 Unspecified Illumina Genome Analyzer Xiao et al. 2014
Gossypium hirsutum SRP030288

Jingmian 13

Lumian 6

Illumina Genome Analyzer IIx

Illumina HiSeq 2000

Chen et al. 2013
Gossypium hirsutum SRP029380

Lonren

Fibremax

Illumina HiSeq 2000

Illumina MiSeq

Unpublished, J. Craig Venter Institute
Gossypium hirsutum SRP029330 TM-1 Illumina HiSeq 2000 Unpublished, J. Craig Venter Institute
Gossypium hirsutum SRP028590 Coker 315 Illumina HiSeq 2000 Unpublished, CSIRO
Gossypium hirsutum SRP026618 Siokra L-23 Illumina HiSeq 2000 Bowman et al. 2013
Gossypium hirsutum SRP026301 Li2-DP5690 Illumina Genome Analyzer IIx Naoumkina et al. 2014
Gossypium hirsutum SRP026000 Unspecified Illumina HiSeq 2000 Jiao et al. 2013
Gossypium hirsutum SRP022981

Alcala

Sealand

PD1

FiberMax

TM-1

Illumina Genome Analyzer Unpublished, University of California Davis
Gossypium hirsutum SRP022981 TM-1 454 GS FLX Titanium Ashrafi et al. 2015
Gossypium hirsutum SRP022981 TM-1 Illumina Genome Analyzer Hulse-Kemp et al. 2014
Gossypium hirsutum SRP020354

JFY-11

JFY-10

JFY-9

JFY-6

JFY-4

JFY-2

Illumina HiSeq 2000 Jin et al. 2014
Gossypium hirsutum SRP018360 Unspecified Illumina HiSeq 2000 Unpublished, CAAS
Gossypium hirsutum SRP018356 Unspecified Illumina HiSeq 2000 Unpublished, CAAS
Gossypium hirsutum SRP018129

D8R8518

D8CMS8518

8518

Ion Torrent PGM Suzuki et al. 2013
Gossypium hirsutum SRP018089

Mutant-Mar-S-3

Mutant-Mar-S-2

Mutant-Mar-S-1

WT-Mar-F-3

WT-Mar-F-2

WT-Mar-F-1

Illumina Genome Analyzer Unpublished, CAAS
Gossypium hirsutum SRP017861 Unspecified Illumina HiSeq 2000 Unpublished, Chinese Academy of Agriculture Sciences (CAAS)
Gossypium hirsutum SRP017574 Unspecified 454 GS FLX Titanium Unpublished, National Botanical Research Institute
Gossypium hirsutum SRP017168

TM-1

Yucatenense

Illumina HiSeq 2000 Unpublished, ARO-Volcani Center
Gossypium hirsutum SRP017061

Maxxa

TM1

CRB252

Coker 315

Cascot L-7

Yucatanese

TX2094

TX2095

TX2090

Palmeri

TX665

Illumina HiSeq 2000 Yoo et al. 2014
Gossypium hirsutum SRP015881

Ys-3

Ys-1

Illumina Genome Analyzer II Yang et al. 2013
Gossypium hirsutum SRP014583

Yucatanense

TX2094

Alcala Maxxa

Illumina Genome Analyzer IIx Unpublished, University of Florida
Gossypium hirsutum SRP013364

Yxy-9

Yxy-8

Yxy-7

Yxy-6

Yxy-5

Yxy-4

Yxy-3

Yxy-2

Yxy-1

Illumina Genome Analyzer Unpublished, Huazhong Agricultural University
Gossypium hirsutum SRP012138 Unspecified Illumina Genome Analyzer IIx Zhang et al. 2014
Gossypium hirsutum SRP012037

Guazuncho 2

454 GS FLX Titanium Unpublished, CIRAD
Gossypium hirsutum SRP011398 Unspecified Illumina HiSeq 2000 Sun et al. 2013  
Gossypium hirsutum SRP010674 Phy76 454 GS 20 Unpublished, Texas Tech University
Gossypium hirsutum SRP010197 Unspecified 454 GS FLX Titanium Unpublished, National Botanical Research Institute
Gossypium hirsutum SRP010197 Unspecified 454 GS FLX Titanium Unpublished, National Botanical Research Institute
Gossypium hirsutum SRP010021 Unspecified Illumina Genome Analyzer IIx Unpublished, Peking University
Gossypium hirsutum SRP010021 Unspecified

Illumina HiSeq 2000

Illumina Genome Analyzer IIx

Wang et al. 2015
Gossypium hirsutum SRP008308

Coker 3

PM1218

GOLBI

Lon-Ren

FiberMax 958

454 GS FLX Unpublished, UOKNOR
Gossypium hirsutum SRP007975 Coker 1218 454 GS FLX Unpublished, Alabama A&M University
Gossypium hirsutum SRP007615 Unspecified Illumina Genome Analyzer IIx Silva et al. 2011
Gossypium hirsutum SRP007192 Unspecified 454 GS FLX Titanium Unpublished, University of Texas at Austin
Gossypium hirsutum SRP005961

Bycl

Eycl

Illumina Genome Analyzer  Li et al. 2012
Gossypium hirsutum SRP004853 TM-1 Illumina Genome Analyzer Unpublished, Huazhong Agricultural University
Gossypium hirsutum SRP001603

TX2094

Maxxa

454 GS FLX Titanium 454 GS FLX Flagel et al, 2012
Gossypium hirsutum SRP001603

TX2094

Maxxa

Illumina Genome Analyzer II Flagel et al, 2012
Gossypium hirsutum SRP001568 Unspecified 454 GS FLX Pang et al, 2012

 

DNA Datasets (as of 2/18/2016)

Organism Name Study Accession Cultivar Instrument Reference
Gossypium hirsutum SRP050345

DH962

Jimian5

Illumina Genome Analyzer II Wang et al. 2015
Gossypium hirsutum SRP047511 Unspecified Illumina HiSeq 2500 Song et al. 2015
Gossypium hirsutum SRP047301

Acala

Acala 1517

Auburn 56

Coker139

Coker's Foster

Delfos 531C

Dixie King

Dixie Triumph

Deltapine 15

Ferguson 406

King

Lanart 57

Lankart

Lone Star

Mebane

Mebane Triumph

Paymaster 54

Paymaster 54B

Rowden

Malone

Stoneville2B

Trice

86-1

CIR7

CIR10

CIR12

CIR35

Esha28

J8891

Jimian 1

Junmian 1

Lumian 1

Shiyuan 321

Simian 2

Simian 3

Illumina HiSeq 2000 Unpublished, Nanjing Agricultural University
Gossypium hirsutum SRP047301

Sumian 12

Xinluzao 26

Xinluzao 1

Xinluzao 42

Brazil 011

Brazil 014

Brazil 0101

Brazil Cotton

India 941

MA-6

India NV50-70

Tashkent 1

Tashkent 2

Tashkent 3

66-241

108

KK1543

SJ1470

Punctatum 3

Punctatum 5

Punctatum 12

Punctatum 14

Punctatum 25

Punctatum 24

Punctatum 31

Morrilli 2

Morrilli 38

Morrilli 45

Yucatanense 1

Yucatanense 3

Yucatanense 2

Yucatanense 5A

Yucatanense 6

Richmondi 7

Richmondi 2

Richmondi 3

Marie-galante 7

Marie-galante 17

Illumina HiSeq 2000 Unpublished, Nanjing Agricultural University
Gossypium hirsutum SRP047301

Marie-galante 36

Marie-galante 62

Marie-galante 71

Latifolium 1

Latifolium 3

Latifolium 13

Latifolium 39

Latifolium 64

Latifolium 161

Latifolium 178

Palmeri 5

Palmeri 14

Palmeri 2

Illumina HiSeq 2000 Unpublished, Nanjing Agricultural University
Gossypium hirsutum SRP046301 TX0231 Illumina Genome Analyzer II Cotton Research Group
Gossypium hirsutum SRP045160

TM-1

Seland542

PD-1

Paymaster HS26

M-240 RNR

FiberMax832

Coker3112

SureGrow747

Stoneville474

Tamcot Sphinx

TX0231

Illumina HiSeq 2500 Hulse-Kemp et al. 2015
Gossypium hirsutum SRP044705 TM-1 Illumina HiSeq 2000 Wang et al. 2015
Gossypium hirsutum SRP029330 TM-1 Illumina HiSeq 2000 Unpublished, J. Craig Venter Institute
Gossypium hirsutum SRP019043 Yucatanense Illumina HiSeq 2000 Unpublished, Mississippi State University
Gossypium hirsutum SRP019039

GA120R1B3

Illumina HiSeq 2000 Unpublished, Mississippi State University
Gossypium hirsutum SRP017198 Acala Maxxa Illumina HiSeq 2000 Unpublished, Mississippi State University
Gossypium hirsutum SRP013723

Unspecified

454 GS FLX Titanium Unpublished, NBRI
Gossypium hirsutum SRP009879

Unspecified

454 GS FLX Titanium Unpublished, BYU-DNASC-UL
Gossypium hirsutum SRP009870 Unspecified 454 GS FLX Titanium Unpublished, BYU-DNASC-UL
Gossypium hirsutum SRP008334

Unspecified

454 GS FLX Unpublished, UOKNOR