GWAS data of lint percentage at genome AD1-NBI available (5/25)

New GWAS and QTL data of lint percentage trait at G.hirsutum AD1-NBI genome data published by SCRC China available (Ref. Chen, et al.)

The data can be accessed via CottonGen's Search  QTL/GWAS and this video shows you How to GWAS Search and Viewing in MapViewer

The April 2025 CottonGen Newsletter available (4/25)

The April 2025 CottonGen Newsletter is issued to inform users of new imported data during the past three months, and an example of how to use markers associated with traits and the markers' genome location in CottonGen.

-- G. hirsutum (AD1) 'ZM113' CRI v1.0 proteins (84,311)

Human-Readable Name-- G. hirsutum (AD1) 'ZM113' CRI v1.0 proteins (84,311)
Database Path/mainlab/web/temp/db/cottongen/AD1_ZM113_T2T-CRI_v1.0.protein.blast.fasta
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. hirsutum (AD1) 'ZM113' CRI v1.0 CDs (84,311)

Human-Readable Name-- G. hirsutum (AD1) 'ZM113' CRI v1.0 CDs (84,311)
Database Path/mainlab/web/temp/db/cottongen/AD1_ZM113_T2T-CRI_v1.0.CDS.blast.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

G. hirsutum (AD1) 'ZM113' CRI v1.0 Genome (26 chrom.)

Human-Readable NameG. hirsutum (AD1) 'ZM113' CRI v1.0 Genome (26 chrom.)
Database Path/mainlab/web/temp/db/cottongen/AD1_ZM113_T2T-CRI_v1.0.genomic.blast.fa
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for AD1_ZM113_T2T-CRI_v1.0
RegEx/^(\S+).*/
Link-out Typejbrowse

-- G. hirsutum (AD1) 'EM22' HAU v1.0 proteins (98,716)

Human-Readable Name-- G. hirsutum (AD1) 'EM22' HAU v1.0 proteins (98,716)
Database Path/mainlab/web/temp/db/cottongen/AD1_HAU_EM22_v1.0.protein.blast.fasta
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. hirsutum (AD1) 'EM22' HAU v1.0 CDs (98,716)

Human-Readable Name-- G. hirsutum (AD1) 'EM22' HAU v1.0 CDs (98,716)
Database Path/mainlab/web/temp/db/cottongen/AD1_HAU_EM22_v1.0.CDS.blast.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

G. hirsutum (AD1) 'EM22' HAU v1.0 Genome (26 chrom. 71 scaffolds)

Human-Readable NameG. hirsutum (AD1) 'EM22' HAU v1.0 Genome (26 chrom. 71 scaffolds)
Database Path/mainlab/web/temp/db/cottongen/AD1_HAU_EM22_v1.0.genomic.blast.fa
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for AD1_HAU_EM22_v1.0
RegEx/^(\S+).*/
Link-out Typejbrowse