rna-gnl|WGS:JAIQCV|GS03G_07870

Transcript Overview
Namerna-gnl|WGS:JAIQCV|GS03G_07870
Unique Namerna-GS03G_07870_E1_ZSTU_v1
TypemRNA
OrganismGossypium stocksii (Cotton (G. stocksii))
Sequence length360
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr03chromosomeChr03:19122802..19123161 +Gossypium stocksii (E1) genome ZSTU_v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
d9igszL0123Gossypium laxum (D9) genome ISU_v1Gossypium laxum
d9igszL0185Gossypium laxum (D9) genome ISU_v1Gossypium laxum
dfigszL0043Gossypium aridum (D4) genome ISU_v1Gossypium aridum
d9igszL0446Gossypium laxum (D9) genome ISU_v1Gossypium laxum
dfigszL0377Gossypium aridum (D4) genome ISU_v1Gossypium aridum
dfigszL0378Gossypium aridum (D4) genome ISU_v1Gossypium aridum
d9igszL0690Gossypium laxum (D9) genome ISU_v1Gossypium laxum
dfigszL0627Gossypium aridum (D4) genome ISU_v1Gossypium aridum
d9igszL1059Gossypium laxum (D9) genome ISU_v1Gossypium laxum
d9igszL1060Gossypium laxum (D9) genome ISU_v1Gossypium laxum
dfigszL0815Gossypium aridum (D4) genome ISU_v1Gossypium aridum
dqigszL0369Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dqigszL0486Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dqigszL0749Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dqigszL0938Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
fngszL0170Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
fngszL0674Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
fngszL1017Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
fngszL1020Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
fngszL1021Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
fngszL1251Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
fngszL1490Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
grogszL0188Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
grogszL0682Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
grogszL0683Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
grogszL0691Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
grogszL0828Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
grogszL1349Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
grogszL1594Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
gszgszL039Gossypium stocksii (E1) genome ZSTU_v1Gossypium stocksii
gszgszL151Gossypium stocksii (E1) genome ZSTU_v1Gossypium stocksii
gszgszL211Gossypium stocksii (E1) genome ZSTU_v1Gossypium stocksii
gszgszR558Gossypium stocksii (E1) genome ZSTU_v1Gossypium stocksii
gszgtiR0663Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
gszgtiR0668Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
gszgtiR0669Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
gszgtiR0671Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
gszgtiR0684Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
gszgtiR0743Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
gszgtiR0744Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
gszgtbR0646Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
gszgtbR0683Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
gszgtbR0692Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
gszgtbR0695Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
gszgtbR0701Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
gszgtbR0704Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
gszgtbR0709Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
gszgtbR0724Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
gszhgsR0712Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
gszhgsR0721Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
gszhgsR0723Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
gszhgsR0747Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
gszhgsR0770Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
gszhgsR0771Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
gszhnR0907Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
gszhnR0934Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
gszhnR0941Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
gszhnR0943Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
gszhnR0968Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
gszhnR1013Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
gszhwR0705Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
gszhwR0740Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
gszhwR0766Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
gszhwR0768Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
gszhwR0772Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
gszhwR0780Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
gszuhR0691Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
gszuhR0715Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
gszuhR0724Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
gszuhR0727Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
gsztoR0743Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
gsztoR0752Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
gszuhR0749Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
gsztoR0755Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
gszuhR0768Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
gsztoR0798Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum

Orthologs
Gene/TranscriptAssemblySpecies
rna-gnl|WGS:VKDL|Gobar.A02G127400.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-J1N35_007411gene-J1N35_007411_E1_ZSTU_v1Gossypium stocksiigene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-gnl|WGS:JAIQCV|GS03G_07870-1exon-GS03G_07870-1_E1_ZSTU_v1Gossypium stocksiiexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-KAH1114033.1cds-KAH1114033.1_E1_ZSTU_v1Gossypium stocksiiCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-gnl|WGS:JAIQCV|GS03G_07870rna-GS03G_07870_E1_ZSTU_v1-proteinGossypium stocksiipolypeptide
rna-GS03G_07870_E1_ZSTU_v1rna-GS03G_07870_E1_ZSTU_v1Gossypium stocksiipolypeptide


Homology
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS03G_07870 vs. NCBI nr
Match: ref|XP_016747922.1| (uncharacterized protein LOC107957005 [Gossypium hirsutum])

HSP 1 Score: 193.741 bits (491), Expect = 7.798e-58
Identity = 87/119 (73.11%), Postives = 102/119 (85.71%), Query Frame = 0 
Query:    1 MEDDLANLNLVDEEEEAFQEEAAVVDQNMNLSLVGCCLTDSVVHFPSLRNTMADLWHPIQGICISDLGERRVFFQFFHEVDIQRVLGGTSWFFNNHLLLLQRLQPSENPLSIQLNSPEF 119
            ME++LANL L+D+EEEAF EEA VVDQ   L LVGCCLTDS+VHFPSLRNT+ADLWHP++GICISDLGE+R  FQFF+EVDIQRVL GT WFFNNH+LLL R+Q  ENPL++ LN  +F
Sbjct:   19 MEEELANLTLIDDEEEAFHEEAGVVDQTYGLCLVGCCLTDSLVHFPSLRNTLADLWHPVKGICISDLGEKRFLFQFFYEVDIQRVLSGTPWFFNNHMLLLHRIQAGENPLTVPLNMADF 137
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS03G_07870 vs. NCBI nr
Match: gb|MBA0756892.1| (hypothetical protein [Gossypium trilobum])

HSP 1 Score: 186.808 bits (473), Expect = 6.817e-57
Identity = 91/119 (76.47%), Postives = 98/119 (82.35%), Query Frame = 0 
Query:    1 MEDDLANLNLVDEEEEAFQEEAAVVDQNMNLSLVGCCLTDSVVHFPSLRNTMADLWHPIQGICISDLGERRVFFQFFHEVDIQRVLGGTSWFFNNHLLLLQRLQPSENPLSIQLNSPEF 119
            MEDDLANL L DEEEEAFQE+AAV DQN+ L LVG CLTDS+VHFPSLRNTMADLWHPI+GICISDLGER   FQFFHEVDI+RVL  T WFFNNHLLLL R+Q  ENP  + L   EF
Sbjct:    1 MEDDLANLALADEEEEAFQEDAAVFDQNLQLILVGRCLTDSIVHFPSLRNTMADLWHPIRGICISDLGERCFLFQFFHEVDIRRVLARTPWFFNNHLLLLHRIQSGENPSLVHLTFSEF 119
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS03G_07870 vs. NCBI nr
Match: gb|MBA0577607.1| (hypothetical protein [Gossypium lobatum])

HSP 1 Score: 185.652 bits (470), Expect = 2.383e-56
Identity = 90/119 (75.63%), Postives = 97/119 (81.51%), Query Frame = 0 
Query:    1 MEDDLANLNLVDEEEEAFQEEAAVVDQNMNLSLVGCCLTDSVVHFPSLRNTMADLWHPIQGICISDLGERRVFFQFFHEVDIQRVLGGTSWFFNNHLLLLQRLQPSENPLSIQLNSPEF 119
            MEDDLANL L DEEEEAFQE+A V DQN+ L LV  CLTDS+VHFPSLRNTMADLWHPI+ ICISDLGERR  FQFFHEVDI+RVL GT WFFNNHLLLL R+Q  ENP  + L   EF
Sbjct:    1 MEDDLANLALADEEEEAFQEDAVVFDQNLQLILVERCLTDSIVHFPSLRNTMADLWHPIKAICISDLGERRFLFQFFHEVDIRRVLIGTPWFFNNHLLLLHRIQSGENPSLVPLTFSEF 119
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS03G_07870 vs. NCBI nr
Match: gb|MBA0633819.1| (hypothetical protein [Gossypium davidsonii])

HSP 1 Score: 181.8 bits (460), Expect = 5.837e-55
Identity = 86/119 (72.27%), Postives = 100/119 (84.03%), Query Frame = 0 
Query:    1 MEDDLANLNLVDEEEEAFQEEAAVVDQNMNLSLVGCCLTDSVVHFPSLRNTMADLWHPIQGICISDLGERRVFFQFFHEVDIQRVLGGTSWFFNNHLLLLQRLQPSENPLSIQLNSPEF 119
            ME+DLANL L DE EEAF+E+AA+VDQN++L LVGCCLTDS+VHFPSLRNT+ADLW+PI+GICISDLG+R   FQFFHEVDIQRVL  T WFFNNHLLL  R++P ENP  + L   EF
Sbjct:    1 MENDLANLALTDEVEEAFEEDAALVDQNLHLCLVGCCLTDSIVHFPSLRNTIADLWYPIRGICISDLGDRCFLFQFFHEVDIQRVLTSTPWFFNNHLLLFHRMKPGENPSLVPLIFTEF 119
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS03G_07870 vs. NCBI nr
Match: gb|MBA0561582.1| (hypothetical protein [Gossypium lobatum])

HSP 1 Score: 178.333 bits (451), Expect = 2.875e-54
Identity = 82/119 (68.91%), Postives = 98/119 (82.35%), Query Frame = 0 
Query:    1 MEDDLANLNLVDEEEEAFQEEAAVVDQNMNLSLVGCCLTDSVVHFPSLRNTMADLWHPIQGICISDLGERRVFFQFFHEVDIQRVLGGTSWFFNNHLLLLQRLQPSENPLSIQLNSPEF 119
            MEDDLANL L+DEEE+A QE+AA V+      LVG CLTD+VVHFPSLRNTMAD+WHPI GICI+DLGE+R  FQFF+EVDI RVL GT WFFNNHLL+L+R++  +NP ++ LNS EF
Sbjct:    1 MEDDLANLRLMDEEEDAIQEDAASVESISQFFLVGRCLTDNVVHFPSLRNTMADIWHPIGGICITDLGEKRYLFQFFNEVDITRVLAGTPWFFNNHLLILKRIKYGDNPATVDLNSTEF 119
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS03G_07870 vs. NCBI nr
Match: gb|MBA0661950.1| (hypothetical protein [Gossypium klotzschianum])

HSP 1 Score: 182.185 bits (461), Expect = 3.507e-54
Identity = 86/119 (72.27%), Postives = 100/119 (84.03%), Query Frame = 0 
Query:    1 MEDDLANLNLVDEEEEAFQEEAAVVDQNMNLSLVGCCLTDSVVHFPSLRNTMADLWHPIQGICISDLGERRVFFQFFHEVDIQRVLGGTSWFFNNHLLLLQRLQPSENPLSIQLNSPEF 119
            ME+DLANL L DE EEAF+E+AA+VDQN++L LVGCCLTDS+VHFPSLRNT+ADLW+PI+GICISDLG+R   FQFFHEVDIQRVL  T WFFNNHLLL  R++P ENP  + L   EF
Sbjct:    1 MENDLANLALTDEVEEAFEEDAALVDQNLHLCLVGCCLTDSIVHFPSLRNTIADLWYPIRGICISDLGDRCFLFQFFHEVDIQRVLTSTPWFFNNHLLLFHRMKPGENPSLVPLIFTEF 119
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS03G_07870 vs. NCBI nr
Match: gb|MBA0706332.1| (hypothetical protein [Gossypium laxum])

HSP 1 Score: 174.866 bits (442), Expect = 3.851e-54
Identity = 81/104 (77.88%), Postives = 92/104 (88.46%), Query Frame = 0 
Query:    1 MEDDLANLNLVDEEEEAFQEEAAVVDQNMNLSLVGCCLTDSVVHFPSLRNTMADLWHPIQGICISDLGERRVFFQFFHEVDIQRVLGGTSWFFNNHLLLLQRLQ 104
            ME+DLANL L DEEEEAF E+A VVDQN+NL LVG CLTDS+VHFPSLRNTMADLWHP++GICISDLG+RRV FQF+HEVDIQRVL GT WFFN HL++  RL+
Sbjct:    1 MENDLANLTLTDEEEEAFVEDATVVDQNLNLCLVGRCLTDSIVHFPSLRNTMADLWHPLRGICISDLGDRRVLFQFYHEVDIQRVLVGTPWFFNKHLIVFHRLK 104
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS03G_07870 vs. NCBI nr
Match: gb|MBA0820134.1| (hypothetical protein [Gossypium harknessii])

HSP 1 Score: 179.489 bits (454), Expect = 3.881e-53
Identity = 85/119 (71.43%), Postives = 96/119 (80.67%), Query Frame = 0 
Query:    1 MEDDLANLNLVDEEEEAFQEEAAVVDQNMNLSLVGCCLTDSVVHFPSLRNTMADLWHPIQGICISDLGERRVFFQFFHEVDIQRVLGGTSWFFNNHLLLLQRLQPSENPLSIQLNSPEF 119
            MEDDLANL LVD+EEEA QE+AA V+      LVG CLTDSVVHFPSLRNTMADLWHPI GICI+D+GE+R  FQFFHEVDI RVL GT WFFNNHLL+L+R+    NP  ++LNS EF
Sbjct:    1 MEDDLANLRLVDDEEEAIQEDAAAVESISQFYLVGRCLTDSVVHFPSLRNTMADLWHPIGGICITDIGEKRYLFQFFHEVDIARVLAGTPWFFNNHLLILKRIPYGGNPAMLELNSMEF 119
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS03G_07870 vs. NCBI nr
Match: gb|MBA0845733.1| (hypothetical protein [Gossypium armourianum])

HSP 1 Score: 179.489 bits (454), Expect = 7.916e-53
Identity = 85/119 (71.43%), Postives = 97/119 (81.51%), Query Frame = 0 
Query:    1 MEDDLANLNLVDEEEEAFQEEAAVVDQNMNLSLVGCCLTDSVVHFPSLRNTMADLWHPIQGICISDLGERRVFFQFFHEVDIQRVLGGTSWFFNNHLLLLQRLQPSENPLSIQLNSPEF 119
            MEDDLANL LVDEEEEA QE+AA V+      LVG CLTDSVVHFPSLRNTMAD+WHPI GI I+DLGE+R  FQFFHEVDI RVL GT WFFNNHLL+L+R+   +NP +++LNS EF
Sbjct:    1 MEDDLANLRLVDEEEEAIQEDAAAVESISQFFLVGRCLTDSVVHFPSLRNTMADIWHPIGGIYITDLGEKRYLFQFFHEVDIARVLAGTPWFFNNHLLILKRIPYGQNPATLELNSIEF 119
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS03G_07870 vs. NCBI nr
Match: gb|MBA0619110.1| (hypothetical protein [Gossypium davidsonii])

HSP 1 Score: 177.563 bits (449), Expect = 1.024e-52
Identity = 83/119 (69.75%), Postives = 97/119 (81.51%), Query Frame = 0 
Query:    1 MEDDLANLNLVDEEEEAFQEEAAVVDQNMNLSLVGCCLTDSVVHFPSLRNTMADLWHPIQGICISDLGERRVFFQFFHEVDIQRVLGGTSWFFNNHLLLLQRLQPSENPLSIQLNSPEF 119
            MEDDLANL LVDEEE+A Q++AA VD      LVG CLTDSVVHFPSL+NTMAD+WHPI GICI+DLGE+R  FQFF+EVDI RVL GT WFFNNHLL+L+R+   ENP +++LNS  F
Sbjct:    1 MEDDLANLRLVDEEEDAIQKDAAAVDSISQFFLVGRCLTDSVVHFPSLQNTMADIWHPIGGICITDLGEKRYLFQFFNEVDIARVLAGTPWFFNNHLLILKRITYGENPATLELNSTVF 119
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS03G_07870 vs. ExPASy TrEMBL
Match: A0A1U8P9N7_GOSHI (uncharacterized protein LOC107957005 OS=Gossypium hirsutum OX=3635 GN=LOC107957005 PE=4 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 3.751e-58
Identity = 87/119 (73.11%), Postives = 102/119 (85.71%), Query Frame = 0 
Query:    1 MEDDLANLNLVDEEEEAFQEEAAVVDQNMNLSLVGCCLTDSVVHFPSLRNTMADLWHPIQGICISDLGERRVFFQFFHEVDIQRVLGGTSWFFNNHLLLLQRLQPSENPLSIQLNSPEF 119
            ME++LANL L+D+EEEAF EEA VVDQ   L LVGCCLTDS+VHFPSLRNT+ADLWHP++GICISDLGE+R  FQFF+EVDIQRVL GT WFFNNH+LLL R+Q  ENPL++ LN  +F
Sbjct:   19 MEEELANLTLIDDEEEAFHEEAGVVDQTYGLCLVGCCLTDSLVHFPSLRNTLADLWHPVKGICISDLGEKRFLFQFFYEVDIQRVLSGTPWFFNNHMLLLHRIQAGENPLTVPLNMADF 137
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS03G_07870 vs. ExPASy TrEMBL
Match: A0A7J9D855_9ROSI (DUF4283 domain-containing protein OS=Gossypium trilobum OX=34281 GN=Gotri_020033 PE=4 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 3.279e-57
Identity = 91/119 (76.47%), Postives = 98/119 (82.35%), Query Frame = 0 
Query:    1 MEDDLANLNLVDEEEEAFQEEAAVVDQNMNLSLVGCCLTDSVVHFPSLRNTMADLWHPIQGICISDLGERRVFFQFFHEVDIQRVLGGTSWFFNNHLLLLQRLQPSENPLSIQLNSPEF 119
            MEDDLANL L DEEEEAFQE+AAV DQN+ L LVG CLTDS+VHFPSLRNTMADLWHPI+GICISDLGER   FQFFHEVDI+RVL  T WFFNNHLLLL R+Q  ENP  + L   EF
Sbjct:    1 MEDDLANLALADEEEEAFQEDAAVFDQNLQLILVGRCLTDSIVHFPSLRNTMADLWHPIRGICISDLGERCFLFQFFHEVDIRRVLARTPWFFNNHLLLLHRIQSGENPSLVHLTFSEF 119
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS03G_07870 vs. ExPASy TrEMBL
Match: A0A7J8NKT9_9ROSI (DUF4283 domain-containing protein OS=Gossypium lobatum OX=34289 GN=Golob_025036 PE=4 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.146e-56
Identity = 90/119 (75.63%), Postives = 97/119 (81.51%), Query Frame = 0 
Query:    1 MEDDLANLNLVDEEEEAFQEEAAVVDQNMNLSLVGCCLTDSVVHFPSLRNTMADLWHPIQGICISDLGERRVFFQFFHEVDIQRVLGGTSWFFNNHLLLLQRLQPSENPLSIQLNSPEF 119
            MEDDLANL L DEEEEAFQE+A V DQN+ L LV  CLTDS+VHFPSLRNTMADLWHPI+ ICISDLGERR  FQFFHEVDI+RVL GT WFFNNHLLLL R+Q  ENP  + L   EF
Sbjct:    1 MEDDLANLALADEEEEAFQEDAVVFDQNLQLILVERCLTDSIVHFPSLRNTMADLWHPIKAICISDLGERRFLFQFFHEVDIRRVLIGTPWFFNNHLLLLHRIQSGENPSLVPLTFSEF 119
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS03G_07870 vs. ExPASy TrEMBL
Match: A0A7J8T653_GOSDV (DUF4283 domain-containing protein (Fragment) OS=Gossypium davidsonii OX=34287 GN=Godav_029476 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.808e-55
Identity = 86/119 (72.27%), Postives = 100/119 (84.03%), Query Frame = 0 
Query:    1 MEDDLANLNLVDEEEEAFQEEAAVVDQNMNLSLVGCCLTDSVVHFPSLRNTMADLWHPIQGICISDLGERRVFFQFFHEVDIQRVLGGTSWFFNNHLLLLQRLQPSENPLSIQLNSPEF 119
            ME+DLANL L DE EEAF+E+AA+VDQN++L LVGCCLTDS+VHFPSLRNT+ADLW+PI+GICISDLG+R   FQFFHEVDIQRVL  T WFFNNHLLL  R++P ENP  + L   EF
Sbjct:    1 MENDLANLALTDEVEEAFEEDAALVDQNLHLCLVGCCLTDSIVHFPSLRNTIADLWYPIRGICISDLGDRCFLFQFFHEVDIQRVLTSTPWFFNNHLLLFHRMKPGENPSLVPLIFTEF 119
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS03G_07870 vs. ExPASy TrEMBL
Match: A0A7J8MAJ4_9ROSI (DUF4283 domain-containing protein (Fragment) OS=Gossypium lobatum OX=34289 GN=Golob_018397 PE=4 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.383e-54
Identity = 82/119 (68.91%), Postives = 98/119 (82.35%), Query Frame = 0 
Query:    1 MEDDLANLNLVDEEEEAFQEEAAVVDQNMNLSLVGCCLTDSVVHFPSLRNTMADLWHPIQGICISDLGERRVFFQFFHEVDIQRVLGGTSWFFNNHLLLLQRLQPSENPLSIQLNSPEF 119
            MEDDLANL L+DEEE+A QE+AA V+      LVG CLTD+VVHFPSLRNTMAD+WHPI GICI+DLGE+R  FQFF+EVDI RVL GT WFFNNHLL+L+R++  +NP ++ LNS EF
Sbjct:    1 MEDDLANLRLMDEEEDAIQEDAASVESISQFFLVGRCLTDNVVHFPSLRNTMADIWHPIGGICITDLGEKRYLFQFFNEVDITRVLAGTPWFFNNHLLILKRIKYGDNPATVDLNSTEF 119
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BLAST of rna-gnl|WGS:JAIQCV|GS03G_07870 vs. ExPASy TrEMBL
Match: A0A7J8VHB9_9ROSI (DUF4283 domain-containing protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_006164 PE=4 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.687e-54
Identity = 86/119 (72.27%), Postives = 100/119 (84.03%), Query Frame = 0 
Query:    1 MEDDLANLNLVDEEEEAFQEEAAVVDQNMNLSLVGCCLTDSVVHFPSLRNTMADLWHPIQGICISDLGERRVFFQFFHEVDIQRVLGGTSWFFNNHLLLLQRLQPSENPLSIQLNSPEF 119
            ME+DLANL L DE EEAF+E+AA+VDQN++L LVGCCLTDS+VHFPSLRNT+ADLW+PI+GICISDLG+R   FQFFHEVDIQRVL  T WFFNNHLLL  R++P ENP  + L   EF
Sbjct:    1 MENDLANLALTDEVEEAFEEDAALVDQNLHLCLVGCCLTDSIVHFPSLRNTIADLWYPIRGICISDLGDRCFLFQFFHEVDIQRVLTSTPWFFNNHLLLFHRMKPGENPSLVPLIFTEF 119
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS03G_07870 vs. ExPASy TrEMBL
Match: A0A7J8Z450_9ROSI (DUF4283 domain-containing protein (Fragment) OS=Gossypium laxum OX=34288 GN=Golax_018449 PE=4 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.853e-54
Identity = 81/104 (77.88%), Postives = 92/104 (88.46%), Query Frame = 0 
Query:    1 MEDDLANLNLVDEEEEAFQEEAAVVDQNMNLSLVGCCLTDSVVHFPSLRNTMADLWHPIQGICISDLGERRVFFQFFHEVDIQRVLGGTSWFFNNHLLLLQRLQ 104
            ME+DLANL L DEEEEAF E+A VVDQN+NL LVG CLTDS+VHFPSLRNTMADLWHP++GICISDLG+RRV FQF+HEVDIQRVL GT WFFN HL++  RL+
Sbjct:    1 MENDLANLTLTDEEEEAFVEDATVVDQNLNLCLVGRCLTDSIVHFPSLRNTMADLWHPLRGICISDLGDRRVLFQFYHEVDIQRVLVGTPWFFNKHLIVFHRLK 104
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS03G_07870 vs. ExPASy TrEMBL
Match: A0A7J9IEV1_9ROSI (Uncharacterized protein OS=Gossypium harknessii OX=34285 GN=Gohar_022256 PE=4 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.867e-53
Identity = 85/119 (71.43%), Postives = 96/119 (80.67%), Query Frame = 0 
Query:    1 MEDDLANLNLVDEEEEAFQEEAAVVDQNMNLSLVGCCLTDSVVHFPSLRNTMADLWHPIQGICISDLGERRVFFQFFHEVDIQRVLGGTSWFFNNHLLLLQRLQPSENPLSIQLNSPEF 119
            MEDDLANL LVD+EEEA QE+AA V+      LVG CLTDSVVHFPSLRNTMADLWHPI GICI+D+GE+R  FQFFHEVDI RVL GT WFFNNHLL+L+R+    NP  ++LNS EF
Sbjct:    1 MEDDLANLRLVDDEEEAIQEDAAAVESISQFYLVGRCLTDSVVHFPSLRNTMADLWHPIGGICITDIGEKRYLFQFFHEVDIARVLAGTPWFFNNHLLILKRIPYGGNPAMLELNSMEF 119
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS03G_07870 vs. ExPASy TrEMBL
Match: A0A7J9KH05_9ROSI (Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_022809 PE=4 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 3.808e-53
Identity = 85/119 (71.43%), Postives = 97/119 (81.51%), Query Frame = 0 
Query:    1 MEDDLANLNLVDEEEEAFQEEAAVVDQNMNLSLVGCCLTDSVVHFPSLRNTMADLWHPIQGICISDLGERRVFFQFFHEVDIQRVLGGTSWFFNNHLLLLQRLQPSENPLSIQLNSPEF 119
            MEDDLANL LVDEEEEA QE+AA V+      LVG CLTDSVVHFPSLRNTMAD+WHPI GI I+DLGE+R  FQFFHEVDI RVL GT WFFNNHLL+L+R+   +NP +++LNS EF
Sbjct:    1 MEDDLANLRLVDEEEEAIQEDAAAVESISQFFLVGRCLTDSVVHFPSLRNTMADIWHPIGGIYITDLGEKRYLFQFFHEVDIARVLAGTPWFFNNHLLILKRIPYGQNPATLELNSIEF 119
[Close]
BLAST of rna-gnl|WGS:JAIQCV|GS03G_07870 vs. ExPASy TrEMBL
Match: A0A7J8RZZ3_GOSDV (Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_028347 PE=4 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.925e-53
Identity = 83/119 (69.75%), Postives = 97/119 (81.51%), Query Frame = 0 
Query:    1 MEDDLANLNLVDEEEEAFQEEAAVVDQNMNLSLVGCCLTDSVVHFPSLRNTMADLWHPIQGICISDLGERRVFFQFFHEVDIQRVLGGTSWFFNNHLLLLQRLQPSENPLSIQLNSPEF 119
            MEDDLANL LVDEEE+A Q++AA VD      LVG CLTDSVVHFPSL+NTMAD+WHPI GICI+DLGE+R  FQFF+EVDI RVL GT WFFNNHLL+L+R+   ENP +++LNS  F
Sbjct:    1 MEDDLANLRLVDEEEDAIQKDAAAVDSISQFFLVGRCLTDSVVHFPSLQNTMADIWHPIGGICITDLGEKRYLFQFFNEVDIARVLAGTPWFFNNHLLILKRITYGENPATLELNSTVF 119
The following BLAST results are available for this feature:
BLAST of rna-gnl|WGS:JAIQCV|GS03G_07870 vs. NCBI nr
Analysis Date: 2022-12-12 (BLASTP of ZSTU v1.0 Gossypium stocksii (E1) proteins vs NCBI nr)
Total hits: 10
Match NameE-valueIdentityDescription
ref|XP_016747922.1|7.798e-5873.11uncharacterized protein LOC107957005 [Gossypium hi... [more]
gb|MBA0756892.1|6.817e-5776.47hypothetical protein [Gossypium trilobum][more]
gb|MBA0577607.1|2.383e-5675.63hypothetical protein [Gossypium lobatum][more]
gb|MBA0633819.1|5.837e-5572.27hypothetical protein [Gossypium davidsonii][more]
gb|MBA0561582.1|2.875e-5468.91hypothetical protein [Gossypium lobatum][more]
gb|MBA0661950.1|3.507e-5472.27hypothetical protein [Gossypium klotzschianum][more]
gb|MBA0706332.1|3.851e-5477.88hypothetical protein [Gossypium laxum][more]
gb|MBA0820134.1|3.881e-5371.43hypothetical protein [Gossypium harknessii][more]
gb|MBA0845733.1|7.916e-5371.43hypothetical protein [Gossypium armourianum][more]
gb|MBA0619110.1|1.024e-5269.75hypothetical protein [Gossypium davidsonii][more]
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BLAST of rna-gnl|WGS:JAIQCV|GS03G_07870 vs. ExPASy TrEMBL
Analysis Date: 2022-12-12 (BLASTP of ZSTU v1.0 Gossypium stocksii (E1) proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
A0A1U8P9N7_GOSHI3.751e-5873.11uncharacterized protein LOC107957005 OS=Gossypium ... [more]
A0A7J9D855_9ROSI3.279e-5776.47DUF4283 domain-containing protein OS=Gossypium tri... [more]
A0A7J8NKT9_9ROSI1.146e-5675.63DUF4283 domain-containing protein OS=Gossypium lob... [more]
A0A7J8T653_GOSDV2.808e-5572.27DUF4283 domain-containing protein (Fragment) OS=Go... [more]
A0A7J8MAJ4_9ROSI1.383e-5468.91DUF4283 domain-containing protein (Fragment) OS=Go... [more]
A0A7J8VHB9_9ROSI1.687e-5472.27DUF4283 domain-containing protein OS=Gossypium klo... [more]
A0A7J8Z450_9ROSI1.853e-5477.88DUF4283 domain-containing protein (Fragment) OS=Go... [more]
A0A7J9IEV1_9ROSI1.867e-5371.43Uncharacterized protein OS=Gossypium harknessii OX... [more]
A0A7J9KH05_9ROSI3.808e-5371.43Uncharacterized protein OS=Gossypium armourianum O... [more]
A0A7J8RZZ3_GOSDV4.925e-5369.75Uncharacterized protein OS=Gossypium davidsonii OX... [more]
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BLAST of rna-gnl|WGS:JAIQCV|GS03G_07870 vs. ExPASy TrEMBL
Analysis Date: 2022-12-12 (BLASTP of ZSTU v1.0 Gossypium stocksii (E1) proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of rna-gnl|WGS:JAIQCV|GS03G_07870 vs. ExPASy TrEMBL
Analysis Date: 2022-12-12 (BLASTP of ZSTU v1.0 Gossypium stocksii (E1) proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan Analysis for ZSTU v1.0 Gossypium stocksii (E1) proteins
Date Performed: 2022-12-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 26..116
e-value: 4.7E-18
score: 65.1

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-GS03G_07870_E1_ZSTU_v1 ID=rna-GS03G_07870_E1_ZSTU_v1; Name=rna-gnl|WGS:JAIQCV|GS03G_07870; organism=Gossypium stocksii; type=mRNA; length=360bp
ATGGAGGACGACTTGGCAAATTTAAATCTGGTGGATGAGGAAGAAGAAGC
TTTTCAGGAAGAGGCGGCGGTGGTTGATCAGAATATGAATCTAAGTTTGG
TTGGGTGCTGCTTAACCGATAGCGTTGTACATTTTCCTTCACTAAGAAAT
ACTATGGCCGACTTATGGCACCCTATCCAGGGTATCTGCATCTCAGATTT
GGGAGAAAGAAGGGTTTTTTTTCAATTTTTCCATGAAGTGGATATTCAGA
GAGTATTGGGGGGAACATCATGGTTTTTTAACAATCATCTTCTGCTGCTT
CAAAGATTACAGCCAAGTGAAAACCCATTATCTATTCAGTTAAACTCACC
AGAATTTTGA
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protein sequence of rna-GS03G_07870_E1_ZSTU_v1

>rna-GS03G_07870_E1_ZSTU_v1 ID=rna-GS03G_07870_E1_ZSTU_v1; Name=rna-GS03G_07870_E1_ZSTU_v1; organism=Gossypium stocksii; type=polypeptide; length=119bp
MEDDLANLNLVDEEEEAFQEEAAVVDQNMNLSLVGCCLTDSVVHFPSLRN
TMADLWHPIQGICISDLGERRVFFQFFHEVDIQRVLGGTSWFFNNHLLLL
QRLQPSENPLSIQLNSPEF
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mRNA from alignment at Chr03:19122802..19123161+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-GS03G_07870_E1_ZSTU_v1 ID=rna-GS03G_07870_E1_ZSTU_v1; Name=rna-gnl|WGS:JAIQCV|GS03G_07870; organism=Gossypium stocksii; type=mRNA; length=360bp; location=Sequence derived from: Chr03:19122802..19123161+ (Gossypium stocksii
ATGGAGGACGACTTGGCAAATTTAAATCTGGTGGATGAGGAAGAAGAAGC
TTTTCAGGAAGAGGCGGCGGTGGTTGATCAGAATATGAATCTAAGTTTGG
TTGGGTGCTGCTTAACCGATAGCGTTGTACATTTTCCTTCACTAAGAAAT
ACTATGGCCGACTTATGGCACCCTATCCAGGGTATCTGCATCTCAGATTT
GGGAGAAAGAAgggttttttttcaatttttccatgAAGTGGATATTCAGA
GAGTATTGGGGGGAACATCATGGTTTTTTAACAATCATCTTCTGCTGCTT
CAAAGATTACAGCCAAGTGAAAACCCATTATCTATTCAGTTAAACTCACC
AGAATTTTGA
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Coding sequence (CDS) from alignment at Chr03:19122802..19123161+

>rna-GS03G_07870_E1_ZSTU_v1 ID=rna-GS03G_07870_E1_ZSTU_v1; Name=rna-gnl|WGS:JAIQCV|GS03G_07870; organism=Gossypium stocksii; type=CDS; length=360bp; location=Sequence derived from: Chr03:19122802..19123161+ (Gossypium stocksii
ATGGAGGACGACTTGGCAAATTTAAATCTGGTGGATGAGGAAGAAGAAGC
TTTTCAGGAAGAGGCGGCGGTGGTTGATCAGAATATGAATCTAAGTTTGG
TTGGGTGCTGCTTAACCGATAGCGTTGTACATTTTCCTTCACTAAGAAAT
ACTATGGCCGACTTATGGCACCCTATCCAGGGTATCTGCATCTCAGATTT
GGGAGAAAGAAgggttttttttcaatttttccatgAAGTGGATATTCAGA
GAGTATTGGGGGGAACATCATGGTTTTTTAACAATCATCTTCTGCTGCTT
CAAAGATTACAGCCAAGTGAAAACCCATTATCTATTCAGTTAAACTCACC
AGAATTTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR025558DUF4283