rna-gnl|WGS:JABEZZ|Gorai_00027967-RA

Transcript Overview
Namerna-gnl|WGS:JABEZZ|Gorai_00027967-RA
Unique Namerna-Gorai_00027967-RA_D5_ISU_v1
TypemRNA
OrganismGossypium raimondii (Gossypium raimondii)
Sequence length633
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr13chromosomeChr13:44524893..44525725 +Gossypium raimondii (D5) 'D5-8' genome ISU_v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
abdriL0057Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
acdriL0502Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
awdriL0435Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
bhdriL0463Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
addriL0449Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
bzdriL0443Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bhdriL1855Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bhdriL1876Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
addriL1681Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
bzdriL1664Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
drirbR0422Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
drirjR232Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
drirbR0452Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
drihwR0325Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
drirbR0494Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
drihwR0346Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
drihwR0368Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
drihnR0437Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
drihjR0398Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
drihnR0509Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
drihjR0461Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
dridriR251Gossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
drigauR239Gossypium australe (G2) genome CRI_v1.1Gossypium australe
drigauR247Gossypium australe (G2) genome CRI_v1.1Gossypium australe
drigbR0301Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
drigdR0358Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
drighR0298Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
drigbR0349Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
drigdR0414Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
drighR0347Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
drightR0390Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
drightR0452Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
drigkR0268Gossypioides kirkii genome ISU_v3Gossypioides kirkii
drighzR0342Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
drighzR0397Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
drigtiR0291Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
drigtiR0306Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
drigrbR0281Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
drigtiR0340Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
drigtiR0356Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
drigrbR0303Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
drihbR0571Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
dridsiR193Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
drigtbR0305Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
drihbR0585Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
dridsiR221Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
drihbR0646Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
drigtbR0338Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
drigtbR0351Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
drihbR0720Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
dridtR276Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
dridtR290Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
drihgsR0339Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
drihgsR0387Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
dridtoR246Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
dridtoR263Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
dridttR232Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
dridttR251Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
drifnR0309Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
drifnR0335Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
dritoR0339Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
dritoR0391Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
dritwR0401Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
driuhR0349Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
dritwR0470Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
driuhR0398Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
drihzR0401Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
drihzR0467Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
dqidriL334Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dqidriL629Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
drigrhR0300Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
drigrhR0320Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
drigrhR0342Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
drigrzR251Gossypium raimondii (D5) 'GPD5lz' genome HAU_v1Gossypium raimondii

Orthologs
Gene/TranscriptAssemblySpecies
Kirkii_Juiced.00g387530.m01Gossypioides kirkii genome ISU_v3Gossypioides kirkii
rna-gnl|WGS_VKGI|Godar.A13G257800.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
rna-gnl|WGS:VKDL|Gobar.D13G257600.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
rna-gnl|WGS:JABFAD|Gohar_00033783-RAGossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
rna-gnl|WGS_VKGI|Godar.D13G271700.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gene-E1A91_D13G264200v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
Gohir.D13G225750.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
Gothu.00031083-RAGossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
rna-gnl|WGS_VKGE|Gotom.D13G274300.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
XM_012606246.1Gossypium raimondii (D5) 'GPD5lz' genome HAU_v1Gossypium raimondii
Gorai.013G256600.1Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
D5.v1.pred_00021502-RAGossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-Gorai_003732gene-Gorai_003732_D5_ISU_v1Gossypium raimondiigene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-gnl|WGS:JABEZZ|Gorai_00027967-RA-1exon-Gorai_00027967-RA-1_D5_ISU_v1Gossypium raimondiiexon
exon-gnl|WGS:JABEZZ|Gorai_00027967-RA-2exon-Gorai_00027967-RA-2_D5_ISU_v1Gossypium raimondiiexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-MBA0603593.1cds-MBA0603593.1_D5_ISU_v1Gossypium raimondiiCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-gnl|WGS:JABEZZ|Gorai_00027967-RArna-Gorai_00027967-RA_D5_ISU_v1-proteinGossypium raimondiipolypeptide
rna-Gorai_00027967-RA_D5_ISU_v1rna-Gorai_00027967-RA_D5_ISU_v1Gossypium raimondiipolypeptide


Homology
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: hypothetical (protein GOBAR_DD01925 [Gossypium barbadense])

HSP 1 Score: 433.721 bits (1114), Expect = 8.798e-154
Identity = 208/210 (99.05%), Postives = 208/210 (99.05%), Query Frame = 0 
Query:    1 MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYKVLRMFQKISPQKLLSTMLTCILLKRILGWRFRYLLVFLRIVISMMTA 210
            MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGT YFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYKVLRMFQKISP KLLSTMLTCILLKRILGWRFRYLLVFLRIVISMMTA
Sbjct:    1 MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTSYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYKVLRMFQKISPHKLLSTMLTCILLKRILGWRFRYLLVFLRIVISMMTA 210
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: PREDICTED: (putative F-box protein At3g10240 [Gossypium raimondii])

HSP 1 Score: 381.333 bits (978), Expect = 1.438e-131
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0 
Query:    1 MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYKVLRMFQKISPQKLLSTMLT 182
            MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYKVLRMFQKISPQKLLSTMLT
Sbjct:    1 MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYKVLRMFQKISPQKLLSTMLT 182
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: hypothetical (protein B456_013G256600, partial [Gossypium raimondii])

HSP 1 Score: 345.51 bits (885), Expect = 1.297e-117
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0 
Query:    1 MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYKV 164
            MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYK+
Sbjct:    1 MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYKI 164
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: PREDICTED: (F-box/kelch-repeat protein At3g23880-like isoform X2 [Gossypium hirsutum])

HSP 1 Score: 147.902 bits (372), Expect = 1.024e-39
Identity = 84/169 (49.70%), Postives = 111/169 (65.68%), Query Frame = 0 
Query:    2 QSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYD---VNLLNVGFDYKTNDYKVLRM 167
            ++R EV +MV+++ILSKL  KS+ RF  VCK W SS  TP+F T+HQ N L +N L LL+K    N H    Y S LSTEKS+NFSV+ NIH+P+FE+      + G CNGLLCLH+ D +A+WNPSTRE   LP   +Q  P+ D      + +GFD ++ DYKV+R 
Sbjct:    3 ETRVEVPEMVMLEILSKLPVKSLTRFRCVCKPWCSSFQTPHFITKHQQNNLHNNNLNLLLKRCQGNTHDDIYYLSQLSTEKSQNFSVQHNIHLPFFEDCWYAPVVSGPCNGLLCLHDADKVALWNPSTREFKTLPQSTVQRPPLVDSTSFGCVGIGFDSQSGDYKVVRF 171
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: F-box (protein CPR30-like [Herrania umbratica])

HSP 1 Score: 148.288 bits (373), Expect = 2.334e-39
Identity = 86/168 (51.19%), Postives = 101/168 (60.12%), Query Frame = 0 
Query:    3 SRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYD---VNLLNVGFDYKTNDYKVLRM 167
            S+ E+ DMV+M ILSKL  KS+ RF  VCK W SS  TP F T+H  N L  N L LL+K  H N  +   YFS LSTEK  NFSV  NIH+P+FEN      + G CNGLLCLH+    A+WNPSTRE  ILP   +   P  D      L  GFD  T+DYKV+R 
Sbjct:    5 SKFEIPDMVMMDILSKLPVKSLARFRCVCKPWSSSFRTPDFITKHHQNNLTDNNLNLLLKRCHGNTRNDIHYFSALSTEKGGNFSVTENIHLPFFENCWYAPVVSGPCNGLLCLHDAGKAALWNPSTREFKILPQSSVNRPPSIDSTRFGCLGFGFDSVTDDYKVVRF 172
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: PREDICTED: (F-box/kelch-repeat protein At3g06240-like isoform X1 [Gossypium hirsutum] >gi|1029027489|ref|XP_016677555.1| PREDICTED: F-box/kelch-repeat protein At3g06240-like isoform X1 [Gossypium hirsutum])

HSP 1 Score: 148.288 bits (373), Expect = 2.549e-39
Identity = 84/169 (49.70%), Postives = 111/169 (65.68%), Query Frame = 0 
Query:    2 QSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYD---VNLLNVGFDYKTNDYKVLRM 167
            ++R EV +MV+++ILSKL  KS+ RF  VCK W SS  TP+F T+HQ N L +N L LL+K    N H    Y S LSTEKS+NFSV+ NIH+P+FE+      + G CNGLLCLH+ D +A+WNPSTRE   LP   +Q  P+ D      + +GFD ++ DYKV+R 
Sbjct:    3 ETRVEVPEMVMLEILSKLPVKSLTRFRCVCKPWCSSFQTPHFITKHQQNNLHNNNLNLLLKRCQGNTHDDIYYLSQLSTEKSQNFSVQHNIHLPFFEDCWYAPVVSGPCNGLLCLHDADKVALWNPSTREFKTLPQSTVQRPPLVDSTSFGCVGIGFDSQSGDYKVVRF 171
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: PREDICTED: (F-box/kelch-repeat protein At3g06240-like [Gossypium arboreum] >gi|1050651038|ref|XP_017648911.1| PREDICTED: F-box/kelch-repeat protein At3g06240-like [Gossypium arboreum] >gi|1050651040|ref|XP_017648912.1| PREDICTED: F-box/kelch-repeat protein At3g06240-like [Gossypium arboreum])

HSP 1 Score: 148.288 bits (373), Expect = 2.688e-39
Identity = 84/169 (49.70%), Postives = 111/169 (65.68%), Query Frame = 0 
Query:    2 QSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYD---VNLLNVGFDYKTNDYKVLRM 167
            ++R EV +MV+++ILSKL  KS+ RF  VCK W SS  TP+F T+HQ N L +N L LL+K    N H    Y S LSTEKS+NFSV+ NIH+P+FE+      + G CNGLLCLH+ D +A+WNPSTRE   LP   +Q  P+ D      + +GFD ++ DYKV+R 
Sbjct:    3 ETRVEVPEMVMLEILSKLPVKSLTRFRCVCKPWCSSFQTPHFITKHQQNNLHNNNLNLLLKRCQGNTHDDIYYLSQLSTEKSQNFSVQHNIHLPFFEDCWYAPVVSGPCNGLLCLHDADKVALWNPSTREFKTLPQSTVQRPPLVDSTSFGCVGIGFDSQSGDYKVVRF 171
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: F-box/kelch-repeat (protein At3g06240-like isoform X1 [Durio zibethinus] >gi|1269890465|ref|XP_022756009.1| F-box/kelch-repeat protein At3g06240-like isoform X1 [Durio zibethinus] >gi|1269890467|ref|XP_022756010.1| F-box/kelch-repeat protein At3g06240-like isoform X1 [Durio zibethinus] >gi|1269890469|ref|XP_022756011.1| F-box/kelch-repeat protein At3g06240-like isoform X1 [Durio zibethinus])

HSP 1 Score: 147.517 bits (371), Expect = 4.756e-39
Identity = 86/167 (51.50%), Postives = 107/167 (64.07%), Query Frame = 0 
Query:    4 RNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYD---VNLLNVGFDYKTNDYKVLRM 167
            R E+ + V+M+ILSKL  +S+ RF  VCK W SS  T +F T+HQHN LK+N L LL+K  H N H    YFS LSTEK +NF VK NIH+P+F+N      + G CNGLLCLH+   +A+WNPSTRE  ILP   +Q     D      L  GFD KT+DYKV+R 
Sbjct:    8 RIELPETVVMEILSKLPVRSLTRFRCVCKRWCSSFQTSHFSTKHQHNNLKNNNLNLLLKRCHGNTHDDIHYFSALSTEKGQNFLVKENIHLPFFQNCWFAPVVSGPCNGLLCLHDAGKVALWNPSTREFKILPQSSVQRPSSVDSTSFGCLGFGFDSKTDDYKVVRF 174
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: PREDICTED: (F-box/kelch-repeat protein At3g23880-like isoform X2 [Gossypium hirsutum])

HSP 1 Score: 144.821 bits (364), Expect = 1.385e-38
Identity = 83/169 (49.11%), Postives = 110/169 (65.09%), Query Frame = 0 
Query:    2 QSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYD---VNLLNVGFDYKTNDYKVLRM 167
            ++R EV +MV+++ILSKL  KS+ RF  VCK W SS  TP+F T+HQ N L +N L LL+K    N      YFS LSTEK +NFSV+ NIH+P+FE+      + G CNGLLCLH+ D +A+WNPSTRE   LP   +Q  P+ D      + +GFD ++ DYKV+R 
Sbjct:    3 ETRVEVPEMVMLEILSKLPVKSLTRFRCVCKPWCSSFQTPHFITKHQQNNLHNNNLNLLLKRCLGNTRDDIYYFSQLSTEKGQNFSVQHNIHLPFFEDCWYAPVVSGPCNGLLCLHDADKVALWNPSTREFKTLPQSTVQRPPLVDSTSFGCVGIGFDSQSGDYKVVRF 171
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: F-box (and associated interaction domains-containing protein, putative isoform 1 [Theobroma cacao] >gi|508786114|gb|EOY33370.1| F-box and associated interaction domains-containing protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 145.976 bits (367), Expect = 1.799e-38
Identity = 86/168 (51.19%), Postives = 101/168 (60.12%), Query Frame = 0 
Query:    3 SRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYD---VNLLNVGFDYKTNDYKVLRM 167
            S+ E+ DMV M ILSKL  KS+ RF  VCK W SS  T  F T+H  N L +N L LL+K  H N  +   YFS LSTEK ENFSV  NIH+P+FEN      + G CNGLLCLH+    A+WNPSTRE  ILP   +   P  D      L  GFD  T+DYKV+R 
Sbjct:    5 SKFEIPDMVTMDILSKLPVKSLARFRCVCKPWSSSFRTSDFITKHHQNNLTNNNLNLLLKRCHGNTRNDIHYFSALSTEKGENFSVTENIHLPFFENCWYAPVVSGPCNGLLCLHDAGKAALWNPSTREFKILPRSSVNRPPSVDSTSFGCLGFGFDSITDDYKVVRF 172
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: tr|A0A0D2U734|A0A0D2U734_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_013G256600 PE=4 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 1.516e-117
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0 
Query:    1 MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYKV 164
            MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYK+
Sbjct:    1 MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYKI 164
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: tr|A0A5D2A2G1|A0A5D2A2G1_GOSDA (F-box domain-containing protein OS=Gossypium darwinii OX=34276 GN=ES288_D13G271700v1 PE=4 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 1.445e-116
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0 
Query:    1 MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYKV 164
            MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGT YFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYK+
Sbjct:    1 MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTSYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYKI 164
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: tr|A0A5D2S747|A0A5D2S747_GOSMU (F-box domain-containing protein (Fragment) OS=Gossypium mustelinum OX=34275 GN=E1A91_D13G264200v1 PE=4 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 2.580e-116
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0 
Query:    1 MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYKV 164
            MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGT YFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYK+
Sbjct:    1 MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTSYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYKI 164
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: tr|A0A5J5NRX0|A0A5J5NRX0_GOSBA (F-box domain-containing protein (Fragment) OS=Gossypium barbadense OX=3634 GN=ES319_D13G257600v1 PE=4 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 2.580e-116
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0 
Query:    1 MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYKV 164
            MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGT YFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYK+
Sbjct:    1 MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTSYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYKI 164
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: tr|A0A5D2I204|A0A5D2I204_GOSTO (F-box domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_D13G274300v1 PE=4 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 4.715e-116
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0 
Query:    1 MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYKV 164
            MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGT YFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYK+
Sbjct:    1 MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTSYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYKI 164
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: tr|A0A5D2E3E2|A0A5D2E3E2_GOSDA (F-box domain-containing protein OS=Gossypium darwinii OX=34276 GN=ES288_A13G257800v1 PE=4 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 1.044e-76
Identity = 134/164 (81.71%), Postives = 139/164 (84.76%), Query Frame = 0 
Query:    1 MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYKV 164
            MQSRNEVADMVLMKILSKL SKSVIRFMNVCK WRSSL TPYFWTQHQHNGLKSNKLRLLIK YHQ+AHSKTTYFS LSTEKSE F VKRNIHIPYFEN+KDQYSIHGQCNGLL                EI ILPPPP+QLDPVYDVN LN+GFDYKTNDYK+
Sbjct:    1 MQSRNEVADMVLMKILSKLESKSVIRFMNVCKCWRSSLPTPYFWTQHQHNGLKSNKLRLLIKRYHQSAHSKTTYFSELSTEKSEKFWVKRNIHIPYFENIKDQYSIHGQCNGLL----------------EIKILPPPPLQLDPVYDVNFLNIGFDYKTNDYKI 148
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: tr|A0A6A2YI11|A0A6A2YI11_HIBSY (F-box domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111741pilonHSYRG00329 PE=4 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.525e-42
Identity = 81/175 (46.29%), Postives = 111/175 (63.43%), Query Frame = 0 
Query:    1 MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHN----HDDIAIWNPSTREITILPP-----PPMQLDPVYDVNLLNVGFDYKTNDYKVLR 166
            +++R E+ +M++++ILSKL  KS+ RF  VCK W SS  TP+F T+H HN +K+N L LL+K  H        YFS LSTEK +NF V  NIH+P+FEN      IHG CNG+LCL +      ++A+WNPSTRE  I+P      PP  LD     N L  G+D +T+D+K++R
Sbjct:    6 IKTRTELPEMLVLEILSKLPVKSLTRFRCVCKPWSSSFETPHFITKHHHNNIKNNYLNLLLKRCHGGTRDDIHYFSQLSTEKDQNFRVNHNIHLPFFENFVHGPFIHGPCNGILCLADLGGLGHNVALWNPSTREFKIIPQTTVQRPPGLLD-FSTFNSLGFGYDSQTDDFKIVR 179
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: tr|A0A1U8IHK0|A0A1U8IHK0_GOSHI (F-box/kelch-repeat protein At3g23880-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107896790 PE=4 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.197e-39
Identity = 84/169 (49.70%), Postives = 111/169 (65.68%), Query Frame = 0 
Query:    2 QSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYD---VNLLNVGFDYKTNDYKVLRM 167
            ++R EV +MV+++ILSKL  KS+ RF  VCK W SS  TP+F T+HQ N L +N L LL+K    N H    Y S LSTEKS+NFSV+ NIH+P+FE+      + G CNGLLCLH+ D +A+WNPSTRE   LP   +Q  P+ D      + +GFD ++ DYKV+R 
Sbjct:    3 ETRVEVPEMVMLEILSKLPVKSLTRFRCVCKPWCSSFQTPHFITKHQQNNLHNNNLNLLLKRCQGNTHDDIYYLSQLSTEKSQNFSVQHNIHLPFFEDCWYAPVVSGPCNGLLCLHDADKVALWNPSTREFKTLPQSTVQRPPLVDSTSFGCVGIGFDSQSGDYKVVRF 171
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: tr|A0A6A3BR13|A0A6A3BR13_HIBSY (F-box domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110015pilonHSYRG00142 PE=4 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.907e-39
Identity = 83/169 (49.11%), Postives = 109/169 (64.50%), Query Frame = 0 
Query:    2 QSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYD---VNLLNVGFDYKTNDYKVLRM 167
            ++R E+ +M++++ILSKL  KS+ RF  VCK W SS  TP+F  +HQ N LK+N L LL+K  H N H    YFS LSTEK +NF VK NIH+P+F+N      + G CNG+LCLH+    A+WNPSTRE  ILP   +Q  P  D      L  G+D +T+DYKV+R 
Sbjct:    6 KTRTELPEMLVLEILSKLPVKSLTRFRCVCKPWSSSFQTPHFIAKHQQNNLKNNNLNLLLKRCHGNTHDDIHYFSQLSTEKGQNFRVKHNIHLPFFKNCWYAPLVDGPCNGVLCLHDAGKAALWNPSTREFKILPQSTVQRPPAVDSTSFGCLGFGYDSQTDDYKVVRF 174
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: tr|A0A1U8IHH9|A0A1U8IHH9_GOSHI (F-box/kelch-repeat protein At3g06240-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107896790 PE=4 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.979e-39
Identity = 84/169 (49.70%), Postives = 111/169 (65.68%), Query Frame = 0 
Query:    2 QSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYD---VNLLNVGFDYKTNDYKVLRM 167
            ++R EV +MV+++ILSKL  KS+ RF  VCK W SS  TP+F T+HQ N L +N L LL+K    N H    Y S LSTEKS+NFSV+ NIH+P+FE+      + G CNGLLCLH+ D +A+WNPSTRE   LP   +Q  P+ D      + +GFD ++ DYKV+R 
Sbjct:    3 ETRVEVPEMVMLEILSKLPVKSLTRFRCVCKPWCSSFQTPHFITKHQQNNLHNNNLNLLLKRCQGNTHDDIYYLSQLSTEKSQNFSVQHNIHLPFFEDCWYAPVVSGPCNGLLCLHDADKVALWNPSTREFKTLPQSTVQRPPLVDSTSFGCVGIGFDSQSGDYKVVRF 171
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: AT2G02030.1 (| F-box family protein | Chr2:482335-483829 FORWARD LENGTH=334 | 201606)

HSP 1 Score: 60.4622 bits (145), Expect = 1.101e-10
Identity = 61/214 (28.50%), Postives = 97/214 (45.33%), Query Frame = 0 
Query:    7 VADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPY-FENLKDQYSIHGQCNGLLCLHNHD-DIAIWNPST-----------REITILPP-PPMQLDPVYDVN----------LLNVGFDYKTNDYKVLRMFQKISPQKLLSTMLTCILLKRILG--WRF 194
            + + ++ +IL +L  KS+ RF  V K WR+ + + YF  +H     KS   +LL  C      ++ T F  L T   E  SV       + FE  K    I   C+GL+C ++    + + NP+T           +++ I  P P ++L+PV D N           + VG D  +  YK++ M+   SP    +T  TC +L  + G  WRF
Sbjct:   39 IPNEIVEEILVRLPVKSLTRFQTVSKHWRTLITSKYFGKRHMALE-KSKGCKLLFVCDDFVDRAEDTLF--LKTVALEKTSVSEGDEQAFEFEGYKGFLDISESCDGLVCFYDTTRAVEVMNPATTMFIELPLSRIQQLCIYKPNPEVELEPVQDPNPVLDPVMTCSQIGVGKDSVSGSYKLVWMYN-TSP----ATPPTCEVLD-LDGKKWRF 243
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: AT3G16210.1 (| F-box family protein | Chr3:5494533-5495615 REVERSE LENGTH=360 | 201606)

HSP 1 Score: 59.3066 bits (142), Expect = 2.551e-10
Identity = 43/162 (26.54%), Postives = 77/162 (47.53%), Query Frame = 0 
Query:   13 MKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLC--LHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYKVLRMFQKIS 172
            ++IL +L+ K + RF  VCK+WR  +  P F     +  +   K    +  Y +N       F  L  E  ++  +   +  P  +++ D+ +    C+G LC  L NH  + +WNP +++  I+P P +  D     N+L  G+D   +DYKV+    ++ 
Sbjct:   11 IEILVRLSMKDLARFRCVCKTWRDLINDPGF--TETYRDMSPAK---FVSFYDKN-------FYMLDVE-GKHPVITNKLDFPLDQSMIDESTCVLHCDGTLCVTLKNH-TLMVWNPFSKQFKIVPNPGIYQDS----NILGFGYDPVHDDYKVVTFIDRLD 154
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: AT1G12870.1 (| F-box and associated interaction domains-containing protein | Chr1:4387129-4389110 REVERSE LENGTH=416 | 201606)

HSP 1 Score: 58.5362 bits (140), Expect = 5.301e-10
Identity = 48/185 (25.95%), Postives = 88/185 (47.57%), Query Frame = 0 
Query:    1 MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSN----KLRLLIKCYHQNAH--SKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHN--HDDIAIWNPSTREITILPPPPMQ---------LDPVYDVNLLNVGFDYKTNDYKVLRMF 168
            M + + + D V+ +I  KL  K+++RF ++ K WRS+L + YF  +H     +S+    K+ ++ + ++ +     +T     +S   S  F+  R  H P + +          C+G+ C+H+    DI + NP+TR    LPP   Q         LD + D+  +N     K  DYK++ ++
Sbjct:   27 MIASSSLPDDVVEEIFLKLPVKALMRFKSLSKQWRSTLESCYFSQRHLKIAERSHVDHPKVMIITEKWNPDIEISFRTISLESVSFLSSALFNFPRGFHHPIYAS--------ESCDGIFCIHSPKTQDIYVVNPATRWFRQLPPARFQIFMHKLNPTLDTLRDMIPVNHLAFVKATDYKLVWLY 203
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: AT3G23880.1 (| F-box and associated interaction domains-containing protein | Chr3:8622061-8623155 REVERSE LENGTH=364 | 201606)

HSP 1 Score: 55.0694 bits (131), Expect = 8.785e-9
Identity = 43/177 (24.29%), Postives = 73/177 (41.24%), Query Frame = 0 
Query:   11 VLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQ---------------HNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDD--IAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYKVLRMFQK 170
            ++ +IL +L  KS+ RF  VC SWRS +    F  +H                +  + +++  L   C H   ++ T Y   +S    E                +D Y + G C+GL+C H   D  + +WNP+ +    L    ++      V     G+D   +DYKV+ + Q+
Sbjct:   18 MMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALILETSKATTSTKSPYGVITTSRYHLKSCCIHSLYNASTVY---VSEHDGELLG-------------RDYYQVVGTCHGLVCFHVDYDKSLYLWNPTIKLQQRLSSSDLETSDDECVVTYGFGYDESEDDYKVVALLQQ 178
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: AT3G10240.1 (| F-box and associated interaction domains-containing protein | Chr3:3166698-3167867 FORWARD LENGTH=389 | 201606)

HSP 1 Score: 54.6842 bits (130), Expect = 9.739e-9
Identity = 48/168 (28.57%), Postives = 73/168 (43.45%), Query Frame = 0 
Query:   11 VLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIH-----------GQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYKVLRM 167
            ++ +IL +L  KSV RF  V K W S    PYF      N L +   RLL+ C+  N      +F     +  + F      H   +  L D+Y +               NGL+C      + +WNPSTR++ ILP P    +   D+ +  +G+D     +KV+ M
Sbjct:   31 LVSEILLRLPEKSVARFRCVSKPWSSITTEPYFI-----NLLTTRSPRLLL-CFKANE----KFFVSSIPQHRQTFETWNKSH--SYSQLIDRYHMEFSEEMNYFPPTESVNGLICFQESARLIVWNPSTRQLLILPKPNGNSN---DLTIF-LGYDPVEGKHKVMCM 182
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: AT3G07870.1 (| F-box and associated interaction domains-containing protein | Chr3:2510871-2512124 FORWARD LENGTH=417 | 201606)

HSP 1 Score: 53.9138 bits (128), Expect = 1.978e-8
Identity = 51/168 (30.36%), Postives = 79/168 (47.02%), Query Frame = 0 
Query:   11 VLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQH---NGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTE----KSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHN---HDDIAIWNPSTREITILPPPPMQLDPVYDVNLL-NVGFDYKTNDYKVLRM 167
            ++  I S+L   S+ R M VC+SWRS L      TQH     +     K  LL+ C   +      +F  LS E    K++ F+++    +P F+       + G CNGLLCL +   +D + ++NP T     LP      +  +D  L+   GF   T +YKVL++
Sbjct:   32 IIADIFSRLPISSIARLMFVCRSWRSVL------TQHGRLSSSSSSPTKPCLLLHC--DSPIRNGLHFLDLSEEEKRIKTKKFTLRFASSMPEFD-------VVGSCNGLLCLSDSLYNDSLYLYNPFTTNSLELPECS---NKYHDQELVFGFGFHEMTKEYKVLKI 181
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: AT1G47790.1 (| F-box and associated interaction domains-containing protein | Chr1:17600004-17601173 REVERSE LENGTH=389 | 201606)

HSP 1 Score: 50.8322 bits (120), Expect = 1.933e-7
Identity = 41/132 (31.06%), Postives = 63/132 (47.73%), Query Frame = 0 
Query:   14 KILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAH------SKTTYFSGLSTEKS-ENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPP 138
            +IL +L  KSV+RF  V K W S +  PYF   ++    +S+  + L+ C+ Q+         K  Y S  S++ + + F VK      Y    +   S+HG    L+C H    + +WNPS R+   LP P
Sbjct:   32 EILLRLPVKSVVRFRCVSKLWSSIITDPYFIKTYE---TQSSTRQSLLFCFKQSDKLFVFSIPKHHYDSNSSSQAAIDRFQVKLPQEFSYPSPTE---SVHG----LICFHVLATVIVWNPSMRQFLTLPKP 153
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: AT4G21240.1 (| F-box and associated interaction domains-containing protein | Chr4:11322411-11323664 FORWARD LENGTH=417 | 201606)

HSP 1 Score: 50.447 bits (119), Expect = 3.457e-7
Identity = 47/166 (28.31%), Postives = 72/166 (43.37%), Query Frame = 0 
Query:   11 VLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNG---------LKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYKVLRM 167
            ++  IL +L +KS +RF  V K W S    PYF                 +K+  +RL I   HQ  H   +Y      ++ E  S K + + P  E++          NGL+C  +  +I +WNPS R+   LP P       Y +    +G+D   + YKVL +
Sbjct:   40 MIPDILLRLPAKSAVRFRIVSKLWLSITTRPYFIRSFAFPSSTRLCLMACVKARDMRLFIS-LHQ--HDDGSY---AHVDRCEIKSPKHDYYNPSSESV----------NGLVCFGDFYNIVVWNPSMRQHVTLPEPKPHSTVRYFIRSC-LGYDPVEDKYKVLSI 188
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: AT5G49610.1 (| F-box family protein | Chr5:20131448-20132527 REVERSE LENGTH=359 | 201606)

HSP 1 Score: 49.6766 bits (117), Expect = 5.746e-7
Identity = 45/164 (27.44%), Postives = 72/164 (43.90%), Query Frame = 0 
Query:    9 DMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDDIAIW---NPSTREITILPP----PPMQLDPVYDVNLLNVGFDYKTNDYKVL 165
            D V+++IL++L  KS+ RF +VCKSW       YF      N L   +  L+ +    ++        G+S E S +F             ++D+  I    NGLLC  +  +  ++   NPSTRE   LP     P  +  P  +  L+ +  D   N + V+
Sbjct:   11 DEVILQILARLPVKSLFRFKSVCKSWYRLPSDKYF--TSLFNQLSVKEQLLVAEVSDSSSLICVDNLRGVS-ELSLDF-------------VRDRVRIRVSSNGLLCCSSIPEKGVYYVCNPSTREYRKLPKSRERPVTRFYPDGEATLVGLACDLSKNKFNVV 158
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: sp|Q9ZPS1|FB94_ARATH (Putative F-box protein At2g02030 OS=Arabidopsis thaliana OX=3702 GN=At2g02030 PE=4 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.071e-9
Identity = 61/214 (28.50%), Postives = 97/214 (45.33%), Query Frame = 0 
Query:    7 VADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPY-FENLKDQYSIHGQCNGLLCLHNHD-DIAIWNPST-----------REITILPP-PPMQLDPVYDVN----------LLNVGFDYKTNDYKVLRMFQKISPQKLLSTMLTCILLKRILG--WRF 194
            + + ++ +IL +L  KS+ RF  V K WR+ + + YF  +H     KS   +LL  C      ++ T F  L T   E  SV       + FE  K    I   C+GL+C ++    + + NP+T           +++ I  P P ++L+PV D N           + VG D  +  YK++ M+   SP    +T  TC +L  + G  WRF
Sbjct:   39 IPNEIVEEILVRLPVKSLTRFQTVSKHWRTLITSKYFGKRHMALE-KSKGCKLLFVCDDFVDRAEDTLF--LKTVALEKTSVSEGDEQAFEFEGYKGFLDISESCDGLVCFYDTTRAVEVMNPATTMFIELPLSRIQQLCIYKPNPEVELEPVQDPNPVLDPVMTCSQIGVGKDSVSGSYKLVWMYN-TSP----ATPPTCEVLD-LDGKKWRF 243
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: sp|Q9LU24|FB145_ARATH (Putative F-box protein At3g16210 OS=Arabidopsis thaliana OX=3702 GN=At3g16210 PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 2.480e-9
Identity = 43/162 (26.54%), Postives = 77/162 (47.53%), Query Frame = 0 
Query:   13 MKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLC--LHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYKVLRMFQKIS 172
            ++IL +L+ K + RF  VCK+WR  +  P F     +  +   K    +  Y +N       F  L  E  ++  +   +  P  +++ D+ +    C+G LC  L NH  + +WNP +++  I+P P +  D     N+L  G+D   +DYKV+    ++ 
Sbjct:   11 IEILVRLSMKDLARFRCVCKTWRDLINDPGF--TETYRDMSPAKF---VSFYDKN-------FYMLDVE-GKHPVITNKLDFPLDQSMIDESTCVLHCDGTLCVTLKNHT-LMVWNPFSKQFKIVPNPGIYQDS----NILGFGYDPVHDDYKVVTFIDRLD 154
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: sp|Q9LPW2|FBK2_ARATH (Putative F-box/kelch-repeat protein At1g12870 OS=Arabidopsis thaliana OX=3702 GN=At1g12870 PE=4 SV=2)

HSP 1 Score: 58.5362 bits (140), Expect = 5.155e-9
Identity = 48/185 (25.95%), Postives = 88/185 (47.57%), Query Frame = 0 
Query:    1 MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSN----KLRLLIKCYHQNAH--SKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHN--HDDIAIWNPSTREITILPPPPMQ---------LDPVYDVNLLNVGFDYKTNDYKVLRMF 168
            M + + + D V+ +I  KL  K+++RF ++ K WRS+L + YF  +H     +S+    K+ ++ + ++ +     +T     +S   S  F+  R  H P + +          C+G+ C+H+    DI + NP+TR    LPP   Q         LD + D+  +N     K  DYK++ ++
Sbjct:   27 MIASSSLPDDVVEEIFLKLPVKALMRFKSLSKQWRSTLESCYFSQRHLKIAERSHVDHPKVMIITEKWNPDIEISFRTISLESVSFLSSALFNFPRGFHHPIYAS--------ESCDGIFCIHSPKTQDIYVVNPATRWFRQLPPARFQIFMHKLNPTLDTLRDMIPVNHLAFVKATDYKLVWLY 203
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: sp|Q9LIR8|FBK67_ARATH (F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 8.542e-8
Identity = 43/177 (24.29%), Postives = 73/177 (41.24%), Query Frame = 0 
Query:   11 VLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQ---------------HNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHNHDD--IAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYKVLRMFQK 170
            ++ +IL +L  KS+ RF  VC SWRS +    F  +H                +  + +++  L   C H   ++ T Y   +S    E                +D Y + G C+GL+C H   D  + +WNP+ +    L    ++      V     G+D   +DYKV+ + Q+
Sbjct:   18 MMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALILETSKATTSTKSPYGVITTSRYHLKSCCIHSLYNASTVY---VSEHDGELLG-------------RDYYQVVGTCHGLVCFHVDYDKSLYLWNPTIKLQQRLSSSDLETSDDECVVTYGFGYDESEDDYKVVALLQQ 178
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: sp|Q9SS35|FB137_ARATH (Putative F-box protein At3g10240 OS=Arabidopsis thaliana OX=3702 GN=At3g10240 PE=4 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 9.470e-8
Identity = 48/168 (28.57%), Postives = 73/168 (43.45%), Query Frame = 0 
Query:   11 VLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHNGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENLKDQYSIH-----------GQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNLLNVGFDYKTNDYKVLRM 167
            ++ +IL +L  KSV RF  V K W S    PYF      N L +   RLL+ C+  N      +F     +  + F      H   +  L D+Y +               NGL+C      + +WNPSTR++ ILP P    +   D+ +  +G+D     +KV+ M
Sbjct:   31 LVSEILLRLPEKSVARFRCVSKPWSSITTEPYFI-----NLLTTRSPRLLL-CFKANE----KFFVSSIPQHRQTFETWNKSH--SYSQLIDRYHMEFSEEMNYFPPTESVNGLICFQESARLIVWNPSTRQLLILPKPNGNSN---DLTIF-LGYDPVEGKHKVMCM 182
[Close]
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Match: sp|Q9SFC7|FB135_ARATH (F-box protein At3g07870 OS=Arabidopsis thaliana OX=3702 GN=At3g07870 PE=2 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 1.923e-7
Identity = 51/168 (30.36%), Postives = 79/168 (47.02%), Query Frame = 0 
Query:   11 VLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQH---NGLKSNKLRLLIKCYHQNAHSKTTYFSGLSTE----KSENFSVKRNIHIPYFENLKDQYSIHGQCNGLLCLHN---HDDIAIWNPSTREITILPPPPMQLDPVYDVNLL-NVGFDYKTNDYKVLRM 167
            ++  I S+L   S+ R M VC+SWRS L      TQH     +     K  LL+ C   +      +F  LS E    K++ F+++    +P F+       + G CNGLLCL +   +D + ++NP T     LP      +  +D  L+   GF   T +YKVL++
Sbjct:   32 IIADIFSRLPISSIARLMFVCRSWRSVL------TQHGRLSSSSSSPTKPCLLLHC--DSPIRNGLHFLDLSEEEKRIKTKKFTLRFASSMPEFD-------VVGSCNGLLCLSDSLYNDSLYLYNPFTTNSLELPECS---NKYHDQELVFGFGFHEMTKEYKVLKI 181
The following BLAST results are available for this feature:
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Analysis Date: 2021-08-24 (BLASTP of ISU_v1 Gossypium_raimondii D5 proteins vs NCBI nr )
Total hits: 10
Match NameE-valueIdentityDescription
hypothetical8.798e-15499.05protein GOBAR_DD01925 [Gossypium barbadense][more]
PREDICTED:1.438e-131100.00putative F-box protein At3g10240 [Gossypium raimon... [more]
hypothetical1.297e-11799.39protein B456_013G256600, partial [Gossypium raimon... [more]
PREDICTED:1.024e-3949.70F-box/kelch-repeat protein At3g23880-like isoform ... [more]
F-box2.334e-3951.19protein CPR30-like [Herrania umbratica][more]
PREDICTED:2.549e-3949.70F-box/kelch-repeat protein At3g06240-like isoform ... [more]
PREDICTED:2.688e-3949.70F-box/kelch-repeat protein At3g06240-like [Gossypi... [more]
F-box/kelch-repeat4.756e-3951.50protein At3g06240-like isoform X1 [Durio zibethinu... [more]
PREDICTED:1.385e-3849.11F-box/kelch-repeat protein At3g23880-like isoform ... [more]
F-box1.799e-3851.19and associated interaction domains-containing prot... [more]
back to top
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Analysis Date: 2021-08-24 (BLASTP of ISU_v1 Gossypium_raimondii D5 proteins vs UniProt TrEMBL )
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A0D2U734|A0A0D2U734_GOSRA1.516e-11799.39Uncharacterized protein (Fragment) OS=Gossypium ra... [more]
tr|A0A5D2A2G1|A0A5D2A2G1_GOSDA1.445e-11698.78F-box domain-containing protein OS=Gossypium darwi... [more]
tr|A0A5D2S747|A0A5D2S747_GOSMU2.580e-11698.78F-box domain-containing protein (Fragment) OS=Goss... [more]
tr|A0A5J5NRX0|A0A5J5NRX0_GOSBA2.580e-11698.78F-box domain-containing protein (Fragment) OS=Goss... [more]
tr|A0A5D2I204|A0A5D2I204_GOSTO4.715e-11698.78F-box domain-containing protein OS=Gossypium tomen... [more]
tr|A0A5D2E3E2|A0A5D2E3E2_GOSDA1.044e-7681.71F-box domain-containing protein OS=Gossypium darwi... [more]
tr|A0A6A2YI11|A0A6A2YI11_HIBSY1.525e-4246.29F-box domain-containing protein OS=Hibiscus syriac... [more]
tr|A0A1U8IHK0|A0A1U8IHK0_GOSHI1.197e-3949.70F-box/kelch-repeat protein At3g23880-like isoform ... [more]
tr|A0A6A3BR13|A0A6A3BR13_HIBSY2.907e-3949.11F-box domain-containing protein OS=Hibiscus syriac... [more]
tr|A0A1U8IHH9|A0A1U8IHH9_GOSHI2.979e-3949.70F-box/kelch-repeat protein At3g06240-like isoform ... [more]
back to top
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Analysis Date: 2021-08-25 (BLASTP of ISU v1 Gossypium raimondii D5 proteins vs arabidopsis Araport11)
Total hits: 9
Match NameE-valueIdentityDescription
AT2G02030.11.101e-1028.50| F-box family protein | Chr2:482335-483829 FORWAR... [more]
AT3G16210.12.551e-1026.54| F-box family protein | Chr3:5494533-5495615 REVE... [more]
AT1G12870.15.301e-1025.95| F-box and associated interaction domains-contain... [more]
AT3G23880.18.785e-924.29| F-box and associated interaction domains-contain... [more]
AT3G10240.19.739e-928.57| F-box and associated interaction domains-contain... [more]
AT3G07870.11.978e-830.36| F-box and associated interaction domains-contain... [more]
AT1G47790.11.933e-731.06| F-box and associated interaction domains-contain... [more]
AT4G21240.13.457e-728.31| F-box and associated interaction domains-contain... [more]
AT5G49610.15.746e-727.44| F-box family protein | Chr5:20131448-20132527 RE... [more]
back to top
BLAST of rna-gnl|WGS:JABEZZ|Gorai_00027967-RA vs.
Analysis Date: 2021-08-25 (BLASTP of ISU v1.0 Gossypium raimondii D5 proteins vs UniProt Swissprot)
Total hits: 6
Match NameE-valueIdentityDescription
sp|Q9ZPS1|FB94_ARATH1.071e-928.50Putative F-box protein At2g02030 OS=Arabidopsis th... [more]
sp|Q9LU24|FB145_ARATH2.480e-926.54Putative F-box protein At3g16210 OS=Arabidopsis th... [more]
sp|Q9LPW2|FBK2_ARATH5.155e-925.95Putative F-box/kelch-repeat protein At1g12870 OS=A... [more]
sp|Q9LIR8|FBK67_ARATH8.542e-824.29F-box/kelch-repeat protein At3g23880 OS=Arabidopsi... [more]
sp|Q9SS35|FB137_ARATH9.470e-828.57Putative F-box protein At3g10240 OS=Arabidopsis th... [more]
sp|Q9SFC7|FB135_ARATH1.923e-730.36F-box protein At3g07870 OS=Arabidopsis thaliana OX... [more]
back to top
InterPro
Analysis Name: InterProScan Analysis for ISU v1.0 Gossypium raimondii D5 proteins
Date Performed: 2021-08-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017451F-box associated interaction domainTIGRFAMTIGR01640TIGR01640coord: 109..171
e-value: 1.4E-12
score: 45.5
IPR001810F-box domainPFAMPF00646F-boxcoord: 11..46
e-value: 1.6E-6
score: 27.8
NoneNo IPR availableGENE3D1.20.1280.50coord: 3..46
e-value: 4.7E-7
score: 31.6
NoneNo IPR availablePANTHERPTHR47993:SF31AND ASSOCIATED INTERACTION DOMAINS-CONTAINING PROTEIN, PUTATIVE ISOFORM 1-RELATEDcoord: 11..171
NoneNo IPR availablePANTHERPTHR47993OS09G0372900 PROTEIN-RELATEDcoord: 11..171
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 9..50

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-Gorai_00027967-RA_D5_ISU_v1 ID=rna-Gorai_00027967-RA_D5_ISU_v1; Name=rna-gnl|WGS:JABEZZ|Gorai_00027967-RA; organism=Gossypium raimondii; type=mRNA; length=633bp
ATGCAAAGTAGAAATGAAGTAGCAGATATGGTGTTAATGAAAATCCTTTC
AAAACTTGCAAGTAAGTCTGTGATACGCTTCATGAACGTTTGTAAATCTT
GGCGTTCTTCTCTTGGAACTCCTTATTTTTGGACTCAACATCAACATAAT
GGTCTCAAAAGCAACAAGCTCCGTCTCCTCATCAAATGCTACCATCAAAA
TGCCCATTCTAAAACCACTTATTTCTCTGGTCTTTCAACTGAAAAGAGTG
AAAACTTTTCGGTGAAACGAAACATTCATATTCCCTACTTTGAGAATCTT
AAGGATCAATATTCTATTCATGGTCAATGTAATGGGCTGCTGTGTTTGCA
CAACCATGATGATATTGCCATTTGGAACCCATCAACAAGGGAAATTACAA
TCCTTCCGCCACCTCCAATGCAACTCGATCCTGTTTATGATGTAAATCTT
TTGAATGTTGGGTTTGATTATAAAACGAATGACTACAAAGTGCTGAGGAT
GTTCCAAAAAATTTCTCCACAAAAGTTGTTGTCGACCATGCTCACTTGTA
TTCTCTTAAAACGGATTCTTGGATGGAGATTCCGATATCTTTTGGTTTTC
CTACGTATAGTTATATCTATGATGACTGCATAA
back to top

protein sequence of rna-Gorai_00027967-RA_D5_ISU_v1

>rna-Gorai_00027967-RA_D5_ISU_v1 ID=rna-Gorai_00027967-RA_D5_ISU_v1; Name=rna-Gorai_00027967-RA_D5_ISU_v1; organism=Gossypium raimondii; type=polypeptide; length=210bp
MQSRNEVADMVLMKILSKLASKSVIRFMNVCKSWRSSLGTPYFWTQHQHN
GLKSNKLRLLIKCYHQNAHSKTTYFSGLSTEKSENFSVKRNIHIPYFENL
KDQYSIHGQCNGLLCLHNHDDIAIWNPSTREITILPPPPMQLDPVYDVNL
LNVGFDYKTNDYKVLRMFQKISPQKLLSTMLTCILLKRILGWRFRYLLVF
LRIVISMMTA
back to top

mRNA from alignment at Chr13:44524893..44525725+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-Gorai_00027967-RA_D5_ISU_v1 ID=rna-Gorai_00027967-RA_D5_ISU_v1; Name=rna-gnl|WGS:JABEZZ|Gorai_00027967-RA; organism=Gossypium raimondii; type=mRNA; length=833bp; location=Sequence derived from: Chr13:44524893..44525725+ (Gossypium raimondii
TTGTTGGACTGATCCATTGGTTAAGGTATGTGCTAGGACACTATATCGAA
AGCTGCCCGTTGCACAGGTATGCAAACTAATTACCCACCACGTACCTATT
TCTGATATTCGCATTTTGAGGAGCTGGTGTtgaaaatttcccaaaattca
tcaaataaatttcaaataaaatcaataacaaTCATGAATAGAGAAGGAAA
ATGCAAAGTAGAAATGAAGTAGCAGATATGGTGTTAATGAAAATCCTTTC
AAAACTTGCAAGTAAGTCTGTGATACGCTTCATGAACGTTTGTAAATCTT
GGCGTTCTTCTCTTGGAACTCCTTATTTTTGGACTCAACATCAACATAAT
GGTCTCAAAAGCAACAAGCTCCGTCTCCTCATCAAATGCTACCATCAAAA
TGCCCATTCTAAAACCACTTATTTCTCTGGTCTTTCAACTGAAAAGAGTG
AAAACTTTTCGGTGAAACGAAACATTCATATTCCCTACTTTGAGAATCTT
AAGGATCAATATTCTATTCATGGTCAATGTAATGGGCTGCTGTGTTTGCA
CAACCATGATGATATTGCCATTTGGAACCCATCAACAAGGGAAATTACAA
TCCTTCCGCCACCTCCAATGCAACTCGATCCTGTTTATGATGTAAATCTT
TTGAATGTTGGGTTTGATTATAAAACGAATGACTACAAAGTGCTGAGGAT
GTTCCAAAAAATTTCTCCACAAAAGTTGTTGTCGACCATGCTCACTTGTA
TTCTCTTAAAACGGATTCTTGGATGGAGATTCCGATATCTTTTGGTTTTC
CTACGTATAGTTATATCTATGATGACTGCATAA
back to top

Coding sequence (CDS) from alignment at Chr13:44524893..44525725+

>rna-Gorai_00027967-RA_D5_ISU_v1 ID=rna-Gorai_00027967-RA_D5_ISU_v1; Name=rna-gnl|WGS:JABEZZ|Gorai_00027967-RA; organism=Gossypium raimondii; type=CDS; length=633bp; location=Sequence derived from: Chr13:44524893..44525725+ (Gossypium raimondii
ATGCAAAGTAGAAATGAAGTAGCAGATATGGTGTTAATGAAAATCCTTTC
AAAACTTGCAAGTAAGTCTGTGATACGCTTCATGAACGTTTGTAAATCTT
GGCGTTCTTCTCTTGGAACTCCTTATTTTTGGACTCAACATCAACATAAT
GGTCTCAAAAGCAACAAGCTCCGTCTCCTCATCAAATGCTACCATCAAAA
TGCCCATTCTAAAACCACTTATTTCTCTGGTCTTTCAACTGAAAAGAGTG
AAAACTTTTCGGTGAAACGAAACATTCATATTCCCTACTTTGAGAATCTT
AAGGATCAATATTCTATTCATGGTCAATGTAATGGGCTGCTGTGTTTGCA
CAACCATGATGATATTGCCATTTGGAACCCATCAACAAGGGAAATTACAA
TCCTTCCGCCACCTCCAATGCAACTCGATCCTGTTTATGATGTAAATCTT
TTGAATGTTGGGTTTGATTATAAAACGAATGACTACAAAGTGCTGAGGAT
GTTCCAAAAAATTTCTCCACAAAAGTTGTTGTCGACCATGCTCACTTGTA
TTCTCTTAAAACGGATTCTTGGATGGAGATTCCGATATCTTTTGGTTTTC
CTACGTATAGTTATATCTATGATGACTGCATAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR017451F-box-assoc_interact_dom
IPR001810F-box_dom
IPR036047F-box-like_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding