Ghe13G12070, Ghe13G12070_WHU-A1_v1 (mRNA) Gossypium herbaceum

Transcript Overview
NameGhe13G12070
Unique NameGhe13G12070_WHU-A1_v1
TypemRNA
OrganismGossypium herbaceum (Cotton (G. herbaceum))
Sequence length486
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr13chromosomeChr13:48104712..48105197 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ghthwL0295Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghzhwL0292Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghthwL0572Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghthwL0575Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghzhwL0557Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghzhwL0561Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghzhwL1520Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghzhwL1912Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghthwL1968Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghzhwL2177Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghzhwL2180Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghthwL2233Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghthwL2236Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
hwhwL277Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hwhwR490Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hwhzR0678Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hwhzR0700Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hwhzR0703Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hwhzR0765Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hwhzR0784Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hwhzR0787Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
grohwL0323Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
grohwL0326Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
grohwL0633Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
grohwL0643Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
grohwL1462Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
grhhwL0303Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
grhhwL0580Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
grhhwL0588Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
grhhwL1419Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
gahhwL0291Gossypium arboreum (A2) 'SXY1' genome HAU_v1Gossypium arboreum
gahhwL0298Gossypium arboreum (A2) 'SXY1' genome HAU_v1Gossypium arboreum
gahhwL0571Gossypium arboreum (A2) 'SXY1' genome HAU_v1Gossypium arboreum
gahhwL0576Gossypium arboreum (A2) 'SXY1' genome HAU_v1Gossypium arboreum
gahhwL1364Gossypium arboreum (A2) 'SXY1' genome HAU_v1Gossypium arboreum
a3hhwL0276Gossypium tomentosum (AD3) genome HAU_v1Gossypium tomentosum
a3hhwL0282Gossypium tomentosum (AD3) genome HAU_v1Gossypium tomentosum
a3hhwL0561Gossypium tomentosum (AD3) genome HAU_v1Gossypium tomentosum
a3hhwL0564Gossypium tomentosum (AD3) genome HAU_v1Gossypium tomentosum
a3hhwL1573Gossypium tomentosum (AD3) genome HAU_v1Gossypium tomentosum
a3hhwL1957Gossypium tomentosum (AD3) genome HAU_v1Gossypium tomentosum
a3hhwL2223Gossypium tomentosum (AD3) genome HAU_v1Gossypium tomentosum
a3hhwL2227Gossypium tomentosum (AD3) genome HAU_v1Gossypium tomentosum
a3hhwL2950Gossypium tomentosum (AD3) genome HAU_v1Gossypium tomentosum
gcfhwL0275Gossypium arboreum (A2) 'SXY1' genome HAU_v2Gossypium arboreum
gcfhwL0281Gossypium arboreum (A2) 'SXY1' genome HAU_v2Gossypium arboreum
gcfhwL0542Gossypium arboreum (A2) 'SXY1' genome HAU_v2Gossypium arboreum
gcfhwL0545Gossypium arboreum (A2) 'SXY1' genome HAU_v2Gossypium arboreum
hwjmbR0694Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hwjmbR0715Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hwjmbR0718Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hwjmbR0775Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hwjmbR0795Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hwjmbR0798Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
a1zhwL0278Gossypium herbaceum (A1) 'ZhongCao1' genome HAU_v1Gossypium herbaceum
a1zhwL0279Gossypium herbaceum (A1) 'ZhongCao1' genome HAU_v1Gossypium herbaceum
a1zhwL0541Gossypium herbaceum (A1) 'ZhongCao1' genome HAU_v1Gossypium herbaceum
a1zhwL0542Gossypium herbaceum (A1) 'ZhongCao1' genome HAU_v1Gossypium herbaceum
a1whwL0286Gossypium herbaceum (A1) 'A1a wild' genome HAU_v1Gossypium herbaceum
a1whwL0543Gossypium herbaceum (A1) 'A1a wild' genome HAU_v1Gossypium herbaceum
a1whwL0544Gossypium herbaceum (A1) 'A1a wild' genome HAU_v1Gossypium herbaceum
b1hhwL0317Gossypium anomalum (B1) genome HAU_v1Gossypium anomalum
b1hhwL0613Gossypium anomalum (B1) genome HAU_v1Gossypium anomalum
b1hhwL0617Gossypium anomalum (B1) genome HAU_v1Gossypium anomalum
b1hhwL1435Gossypium anomalum (B1) genome HAU_v1Gossypium anomalum
c1hhwL0316Gossypium sturtianum (C1) genome HAU_v1Gossypium sturtianum
c1hhwL0609Gossypium sturtianum (C1) genome HAU_v1Gossypium sturtianum
c1hhwL0615Gossypium sturtianum (C1) genome HAU_v1Gossypium sturtianum
c1hhwL0625Gossypium sturtianum (C1) genome HAU_v1Gossypium sturtianum
f1hhwL0322Gossypium longicalyx (F1) genome HAU_v1Gossypium longicalyx
f1hhwL0585Gossypium longicalyx (F1) genome HAU_v1Gossypium longicalyx
f1hhwL0587Gossypium longicalyx (F1) genome HAU_v1Gossypium longicalyx
f1hhwL0597Gossypium longicalyx (F1) genome HAU_v1Gossypium longicalyx
f1hhwL1308Gossypium longicalyx (F1) genome HAU_v1Gossypium longicalyx
g1hhwL0330Gossypium bickii (G1) genome HAU_v1Gossypium bickii
g1hhwL0637Gossypium bickii (G1) genome HAU_v1Gossypium bickii
g1hhwL0650Gossypium bickii (G1) genome HAU_v1Gossypium bickii
g1hhwL1513Gossypium bickii (G1) genome HAU_v1Gossypium bickii
hwpscR0684Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
hwpscR0704Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
hwpscR0759Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
hwpscR0770Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
hwpscR0774Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
hwt2tR0576Gossypium raimondii (D5) 'D5-3' Telomere-to-Telomere genome PKU_v1.0Gossypium raimondii
hwt2tR0598Gossypium raimondii (D5) 'D5-3' Telomere-to-Telomere genome PKU_v1.0Gossypium raimondii
hwt2tR0609Gossypium raimondii (D5) 'D5-3' Telomere-to-Telomere genome PKU_v1.0Gossypium raimondii
hwtmhR226Gossypium hirsutum (AD1) 'TM-1' genome HAU_v2.0Gossypium hirsutum
hwtmhR245Gossypium hirsutum (AD1) 'TM-1' genome HAU_v2.0Gossypium hirsutum
aemhwL0300Gossypium hirsutum (AD1) 'EM22' genome HAU v1.0Gossypium hirsutum
aemhwL0570Gossypium hirsutum (AD1) 'EM22' genome HAU v1.0Gossypium hirsutum
aemhwL0574Gossypium hirsutum (AD1) 'EM22' genome HAU v1.0Gossypium hirsutum
aemhwL1841Gossypium hirsutum (AD1) 'EM22' genome HAU v1.0Gossypium hirsutum
aemhwL2082Gossypium hirsutum (AD1) 'EM22' genome HAU v1.0Gossypium hirsutum
aemhwL2084Gossypium hirsutum (AD1) 'EM22' genome HAU v1.0Gossypium hirsutum

Orthologs
Gene/TranscriptAssemblySpecies
Garb_13G013840.1Gossypium arboreum (A2) 'SXY1' genome HAU_v1Gossypium arboreum
XM_017762625.1Gossypium arboreum (A2) 'SXY1' genome HAU_v2Gossypium arboreum
GhirA13G014120.1Gossypium hirsutum (AD1) 'EM22' genome HAU v1.0Gossypium hirsutum
Ghicr24_A13G117900.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
Gh_A13G114000.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
Grot_11G013410.1Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Gher_13G018110.1Gossypium herbaceum (A1) 'ZhongCao1' genome HAU_v1Gossypium herbaceum
Gheraf_13G014870.1Gossypium herbaceum (A1) 'A1a wild' genome HAU_v1Gossypium herbaceum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ghe13G12070.geneGhe13G12070.gene_WHU-A1_v1Gossypium herbaceumgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ghe13G12070.CDS1Ghe13G12070.CDS1_WHU-A1_v1Gossypium herbaceumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ghe13G12070Ghe13G12070_WHU-A1_v1-proteinGossypium herbaceumpolypeptide
Ghe13G12070_WHU-A1_v1Ghe13G12070_WHU-A1_v1Gossypium herbaceumpolypeptide


Homology
[Close]
BLAST of Ghe13G12070 vs. NCBI nr
Match: gi|1029012240|ref|XP_016669990.1| (PREDICTED: uncharacterized protein LOC107889968 [Gossypium hirsutum] >gi|1029022938|ref|XP_016675309.1| PREDICTED: uncharacterized protein LOC107894557 [Gossypium hirsutum])

HSP 1 Score: 319.316 bits (817), Expect = 4.076e-110
Identity = 157/161 (97.52%), Postives = 158/161 (98.14%), Query Frame = 0 
Query:    1 MGLRTAIERKIKSLEVYGDSALVIYQFQGKCETRDSKLINYRRLVLGLVEKFDDITFNYLPRDENQMVDTLATLASIIKVNRQEDVKPIQMSICEAPSSCYSIEEEERDDHPWYQDILRYVRKRVYPDQATKNDKRTLRRLACDYVLDGEILYKDERIKYY 161
            MGLRTAIERKIKSLEVYGDSALVIYQFQGKCETRDSKLINYRRLVLGLVEKFDDITFNYLPRDENQMVDTLATLASIIKVNRQED KPIQMSICEAPS CYSIEEEERDDHPWYQDILRYVRKR YPDQATKN+KRTLRRLACDYVLDGEILYKDERIKYY
Sbjct:    1 MGLRTAIERKIKSLEVYGDSALVIYQFQGKCETRDSKLINYRRLVLGLVEKFDDITFNYLPRDENQMVDTLATLASIIKVNRQEDEKPIQMSICEAPSYCYSIEEEERDDHPWYQDILRYVRKREYPDQATKNNKRTLRRLACDYVLDGEILYKDERIKYY 161
[Close]
BLAST of Ghe13G12070 vs. NCBI nr
Match: gi|1050593374|ref|XP_017618114.1| (PREDICTED: uncharacterized protein LOC108462712 [Gossypium arboreum])

HSP 1 Score: 317.775 bits (813), Expect = 1.370e-109
Identity = 155/161 (96.27%), Postives = 159/161 (98.76%), Query Frame = 0 
Query:    1 MGLRTAIERKIKSLEVYGDSALVIYQFQGKCETRDSKLINYRRLVLGLVEKFDDITFNYLPRDENQMVDTLATLASIIKVNRQEDVKPIQMSICEAPSSCYSIEEEERDDHPWYQDILRYVRKRVYPDQATKNDKRTLRRLACDYVLDGEILYKDERIKYY 161
            MGLRTAIERKIKSLEVYGDSALVIYQFQGKCETRDSKLINYRRLVLGLVEKFDDITFNYLPRD+NQMVDTLATLASIIKVNRQEDVKPIQMSICEAPS CYSIEEEERDDHPWYQDIL+YVRKR YPDQATKN+KRTLRRLACDYVLDGEILYK+ERIKYY
Sbjct:    1 MGLRTAIERKIKSLEVYGDSALVIYQFQGKCETRDSKLINYRRLVLGLVEKFDDITFNYLPRDKNQMVDTLATLASIIKVNRQEDVKPIQMSICEAPSYCYSIEEEERDDHPWYQDILQYVRKREYPDQATKNEKRTLRRLACDYVLDGEILYKEERIKYY 161
[Close]
BLAST of Ghe13G12070 vs. NCBI nr
Match: gi|1050626100|ref|XP_017635950.1| (PREDICTED: uncharacterized protein LOC108478021 [Gossypium arboreum])

HSP 1 Score: 268.47 bits (685), Expect = 4.780e-90
Identity = 129/154 (83.77%), Postives = 143/154 (92.86%), Query Frame = 0 
Query:    1 MGLRTAIERKIKSLEVYGDSALVIYQFQGKCETRDSKLINYRRLVLGLVEKFDDITFNYLPRDENQMVDTLATLASIIKVNRQEDVKPIQMSICEAPSSCYSIEEEERDDHPWYQDILRYVRKRVYPDQATKNDKRTLRRLACDYVLDGEILYK 154
            MGL+ AIERKIK+LEVYGDSA+VIYQ +G+ ETRD+KLINYRRLVLGLVE+FDDITFNYLPRDENQM D LATLAS+IKV+RQEDVKPIQMSI EAPS CY+IEEEER D+PWYQDIL+YVR R YPDQAT+N+KRTLRRL CDYVLDGEILYK
Sbjct:    1 MGLKVAIERKIKALEVYGDSAVVIYQLRGEWETRDAKLINYRRLVLGLVEEFDDITFNYLPRDENQMADALATLASMIKVSRQEDVKPIQMSIYEAPSYCYNIEEEERGDYPWYQDILQYVRNREYPDQATENEKRTLRRLTCDYVLDGEILYK 154
[Close]
BLAST of Ghe13G12070 vs. NCBI nr
Match: gi|1029083897|ref|XP_016702125.1| (PREDICTED: uncharacterized protein LOC107917267 [Gossypium hirsutum])

HSP 1 Score: 260.381 bits (664), Expect = 4.307e-86
Identity = 126/154 (81.82%), Postives = 139/154 (90.26%), Query Frame = 0 
Query:    1 MGLRTAIERKIKSLEVYGDSALVIYQFQGKCETRDSKLINYRRLVLGLVEKFDDITFNYLPRDENQMVDTLATLASIIKVNRQEDVKPIQMSICEAPSSCYSIEEEERDDHPWYQDILRYVRKRVYPDQATKNDKRTLRRLACDYVLDGEILYK 154
            MG RTAIE KIK+LEVYGDSALVIYQ +G+ E RD+KLINYRRLVLGLVE+FDDITFNYLPRDENQ+   LATLAS+IKV+R+ED+KP QM+ICEAPS  Y+IE EERDDHPWYQDILRYVR R YPDQAT N+KRTLRRLACDYVLDGEILYK
Sbjct:    9 MGHRTAIECKIKTLEVYGDSALVIYQLRGEWEIRDAKLINYRRLVLGLVEEFDDITFNYLPRDENQIAKALATLASMIKVSRREDIKPSQMTICEAPSYYYNIEREERDDHPWYQDILRYVRNREYPDQATDNEKRTLRRLACDYVLDGEILYK 162
[Close]
BLAST of Ghe13G12070 vs. NCBI nr
Match: gi|1050567079|ref|XP_017604116.1| (PREDICTED: uncharacterized protein LOC108450858 [Gossypium arboreum])

HSP 1 Score: 258.455 bits (659), Expect = 2.062e-85
Identity = 126/153 (82.35%), Postives = 137/153 (89.54%), Query Frame = 0 
Query:    2 GLRTAIERKIKSLEVYGDSALVIYQFQGKCETRDSKLINYRRLVLGLVEKFDDITFNYLPRDENQMVDTLATLASIIKVNRQEDVKPIQMSICEAPSSCYSIEEEERDDHPWYQDILRYVRKRVYPDQATKNDKRTLRRLACDYVLDGEILYK 154
            GLR  IERKIKSLEVY DSALVIYQ +G+ ETRDSKLINYRRLVLG VE+FD+ITF+YLP DENQM D LATLASIIKV+RQEDVKPIQMSIC APS CY+IE+EERDDHPWYQ ILRYVR   +PDQAT+NDKRTLR LACDYVLDG+ILYK
Sbjct:   10 GLRATIERKIKSLEVYVDSALVIYQLRGEWETRDSKLINYRRLVLGSVEEFDNITFSYLPHDENQMADALATLASIIKVSRQEDVKPIQMSICRAPSYCYNIEDEERDDHPWYQHILRYVRNCEFPDQATENDKRTLRSLACDYVLDGKILYK 162
[Close]
BLAST of Ghe13G12070 vs. NCBI nr
Match: gi|1050649085|ref|XP_017647925.1| (PREDICTED: uncharacterized protein LOC108488132 [Gossypium arboreum])

HSP 1 Score: 259.996 bits (663), Expect = 3.184e-85
Identity = 127/154 (82.47%), Postives = 140/154 (90.91%), Query Frame = 0 
Query:    1 MGLRTAIERKIKSLEVYGDSALVIYQFQGKCETRDSKLINYRRLVLGLVEKFDDITFNYLPRDENQMVDTLATLASIIKVNRQEDVKPIQMSICEAPSSCYSIEEEERDDHPWYQDILRYVRKRVYPDQATKNDKRTLRRLACDYVLDGEILYK 154
            MGLR AIE KIK++EVYGDSALVIYQ +G+ ETRD+KLINYRRLVLGLVE+FDDITFNYL RDENQM D LATLAS+IKV+RQED+K IQ SICEAPS CY+IEEEERDDHPWYQDILRYVR   YPDQAT+N+KRTL+RL CDYVLDGEILYK
Sbjct:  104 MGLRAAIECKIKAMEVYGDSALVIYQLRGEWETRDAKLINYRRLVLGLVEEFDDITFNYLSRDENQMADALATLASMIKVSRQEDMKFIQ-SICEAPSYCYNIEEEERDDHPWYQDILRYVRNGEYPDQATENEKRTLKRLTCDYVLDGEILYK 256
[Close]
BLAST of Ghe13G12070 vs. NCBI nr
Match: gi|1028995150|ref|XP_016752322.1| (PREDICTED: uncharacterized protein LOC107960492 [Gossypium hirsutum] >gi|1029007384|ref|XP_016667587.1| PREDICTED: uncharacterized protein LOC107887881 [Gossypium hirsutum])

HSP 1 Score: 254.218 bits (648), Expect = 1.444e-84
Identity = 124/146 (84.93%), Postives = 131/146 (89.73%), Query Frame = 0 
Query:    1 MGLRTAIERKIKSLEVYGDSALVIYQFQGKCETRDSKLINYRRLVLGLVEKFDDITFNYLPRDENQMVDTLATLASIIKVNRQEDVKPIQMSICEAPSSCYSIEEEERDDHPWYQDILRYVRKRVYPDQATKNDKRTLRRLACDYV 146
            +GLR  IERKIKSLEVY DSALVIYQ +G+ ET D KLINYRRLVLGLVE+FDDITFNYLPRDENQM D LATLASIIKVNRQEDVKPIQMSICEAPS CY+IEEEERDDHPWYQDILRYVR R YP+Q  +NDKR LRRLACDYV
Sbjct:    9 IGLRAGIERKIKSLEVYRDSALVIYQLRGEWETSDYKLINYRRLVLGLVEEFDDITFNYLPRDENQMADALATLASIIKVNRQEDVKPIQMSICEAPSYCYNIEEEERDDHPWYQDILRYVRNREYPNQIIENDKRMLRRLACDYV 154
[Close]
BLAST of Ghe13G12070 vs. NCBI nr
Match: gi|1050604418|ref|XP_017624678.1| (PREDICTED: uncharacterized protein LOC108468299 [Gossypium arboreum])

HSP 1 Score: 253.447 bits (646), Expect = 1.270e-83
Identity = 120/154 (77.92%), Postives = 141/154 (91.56%), Query Frame = 0 
Query:    1 MGLRTAIERKIKSLEVYGDSALVIYQFQGKCETRDSKLINYRRLVLGLVEKFDDITFNYLPRDENQMVDTLATLASIIKVNRQEDVKPIQMSICEAPSSCYSIEEEERDDHPWYQDILRYVRKRVYPDQATKNDKRTLRRLACDYVLDGEILYK 154
            MGLRTA +RKI++LEVYGDSALVIYQ +G+ +TRDSKLINYRR+VLGL+E+FDDITFNYL RDENQ+ D LATLAS+IKV++Q+DVKPIQMSI EAP+ CY++E EERDDHPWYQDILRY+R R YPDQAT+NDKRTLRRLACDY+L+ EI YK
Sbjct:    1 MGLRTAKKRKIRTLEVYGDSALVIYQLKGEWDTRDSKLINYRRVVLGLIEEFDDITFNYLLRDENQIADALATLASMIKVSKQKDVKPIQMSIYEAPAPCYNVEGEERDDHPWYQDILRYMRNREYPDQATENDKRTLRRLACDYILNEEIQYK 154
[Close]
BLAST of Ghe13G12070 vs. NCBI nr
Match: gi|1028982043|ref|XP_016738031.1| (PREDICTED: uncharacterized protein LOC107948041 [Gossypium hirsutum])

HSP 1 Score: 251.521 bits (641), Expect = 5.001e-83
Identity = 120/147 (81.63%), Postives = 131/147 (89.12%), Query Frame = 0 
Query:    1 MGLRTAIERKIKSLEVYGDSALVIYQFQGKCETRDSKLINYRRLVLGLVEKFDDITFNYLPRDENQMVDTLATLASIIKVNRQEDVKPIQMSICEAPSSCYSIEEEERDDHPWYQDILRYVRKRVYPDQATKNDKRTLRRLACDYVL 147
            MGL+ AIERKIKSLEVYGDSALVIYQ QG+ E RDSKLINYRRLVLGLVE+FDDITFNYL RDENQM D L T  S+IK++RQEDVKPIQMSIC+APS CY+IEEE RDDHPWYQDILRYVR R Y DQAT+N+KR LRRLACDYV+
Sbjct:    1 MGLQAAIERKIKSLEVYGDSALVIYQLQGEWEIRDSKLINYRRLVLGLVEEFDDITFNYLSRDENQMADALVTFTSMIKISRQEDVKPIQMSICKAPSYCYNIEEEVRDDHPWYQDILRYVRNREYSDQATENEKRALRRLACDYVV 147
[Close]
BLAST of Ghe13G12070 vs. NCBI nr
Match: gi|1050619491|ref|XP_017632532.1| (PREDICTED: uncharacterized protein LOC108475027 [Gossypium arboreum])

HSP 1 Score: 251.906 bits (642), Expect = 7.349e-83
Identity = 123/154 (79.87%), Postives = 137/154 (88.96%), Query Frame = 0 
Query:    1 MGLRTAIERKIKSLEVYGDSALVIYQFQGKCETRDSKLINYRRLVLGLVEKFDDITFNYLPRDENQMVDTLATLASIIKVNRQEDVKPIQMSICEAPSSCYSIEEEERDDHPWYQDILRYVRKRVYPDQATKNDKRTLRRLACDYVLDGEILYK 154
            MGL TAIE KI++LEVYGDS LVIYQF+G+ ETRDSKLINYRRLVLGL+E+FDDITFNYLP  ENQM + LATLAS+IKV+RQED K IQ+SI EAPS CY+IEEEERDD+ WYQDILRYVR R YPDQAT+NDKR L+RL CDYVLDGEILYK
Sbjct:    1 MGLCTAIECKIRALEVYGDSTLVIYQFKGEWETRDSKLINYRRLVLGLIEEFDDITFNYLPGGENQMTNALATLASMIKVSRQEDAKLIQISIYEAPSHCYNIEEEERDDYSWYQDILRYVRNREYPDQATENDKRILKRLTCDYVLDGEILYK 154
[Close]
BLAST of Ghe13G12070 vs. ExPASy TrEMBL
Match: A0A1U8HVE2_GOSHI (uncharacterized protein LOC107889968 OS=Gossypium hirsutum OX=3635 GN=LOC107889968 PE=4 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 3.424e-110
Identity = 157/161 (97.52%), Postives = 158/161 (98.14%), Query Frame = 0 
Query:    1 MGLRTAIERKIKSLEVYGDSALVIYQFQGKCETRDSKLINYRRLVLGLVEKFDDITFNYLPRDENQMVDTLATLASIIKVNRQEDVKPIQMSICEAPSSCYSIEEEERDDHPWYQDILRYVRKRVYPDQATKNDKRTLRRLACDYVLDGEILYKDERIKYY 161
            MGLRTAIERKIKSLEVYGDSALVIYQFQGKCETRDSKLINYRRLVLGLVEKFDDITFNYLPRDENQMVDTLATLASIIKVNRQED KPIQMSICEAPS CYSIEEEERDDHPWYQDILRYVRKR YPDQATKN+KRTLRRLACDYVLDGEILYKDERIKYY
Sbjct:    1 MGLRTAIERKIKSLEVYGDSALVIYQFQGKCETRDSKLINYRRLVLGLVEKFDDITFNYLPRDENQMVDTLATLASIIKVNRQEDEKPIQMSICEAPSYCYSIEEEERDDHPWYQDILRYVRKREYPDQATKNNKRTLRRLACDYVLDGEILYKDERIKYY 161
[Close]
BLAST of Ghe13G12070 vs. ExPASy TrEMBL
Match: A0A1U8KI30_GOSHI (uncharacterized protein LOC107917267 OS=Gossypium hirsutum OX=3635 GN=LOC107917267 PE=4 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 3.618e-86
Identity = 126/154 (81.82%), Postives = 139/154 (90.26%), Query Frame = 0 
Query:    1 MGLRTAIERKIKSLEVYGDSALVIYQFQGKCETRDSKLINYRRLVLGLVEKFDDITFNYLPRDENQMVDTLATLASIIKVNRQEDVKPIQMSICEAPSSCYSIEEEERDDHPWYQDILRYVRKRVYPDQATKNDKRTLRRLACDYVLDGEILYK 154
            MG RTAIE KIK+LEVYGDSALVIYQ +G+ E RD+KLINYRRLVLGLVE+FDDITFNYLPRDENQ+   LATLAS+IKV+R+ED+KP QM+ICEAPS  Y+IE EERDDHPWYQDILRYVR R YPDQAT N+KRTLRRLACDYVLDGEILYK
Sbjct:    9 MGHRTAIECKIKTLEVYGDSALVIYQLRGEWEIRDAKLINYRRLVLGLVEEFDDITFNYLPRDENQIAKALATLASMIKVSRREDIKPSQMTICEAPSYYYNIEREERDDHPWYQDILRYVRNREYPDQATDNEKRTLRRLACDYVLDGEILYK 162
[Close]
BLAST of Ghe13G12070 vs. ExPASy TrEMBL
Match: A0A1U8PMB3_GOSHI (uncharacterized protein LOC107887881 OS=Gossypium hirsutum OX=3635 GN=LOC107960492 PE=4 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 1.213e-84
Identity = 124/146 (84.93%), Postives = 131/146 (89.73%), Query Frame = 0 
Query:    1 MGLRTAIERKIKSLEVYGDSALVIYQFQGKCETRDSKLINYRRLVLGLVEKFDDITFNYLPRDENQMVDTLATLASIIKVNRQEDVKPIQMSICEAPSSCYSIEEEERDDHPWYQDILRYVRKRVYPDQATKNDKRTLRRLACDYV 146
            +GLR  IERKIKSLEVY DSALVIYQ +G+ ET D KLINYRRLVLGLVE+FDDITFNYLPRDENQM D LATLASIIKVNRQEDVKPIQMSICEAPS CY+IEEEERDDHPWYQDILRYVR R YP+Q  +NDKR LRRLACDYV
Sbjct:    9 IGLRAGIERKIKSLEVYRDSALVIYQLRGEWETSDYKLINYRRLVLGLVEEFDDITFNYLPRDENQMADALATLASIIKVNRQEDVKPIQMSICEAPSYCYNIEEEERDDHPWYQDILRYVRNREYPNQIIENDKRMLRRLACDYV 154
[Close]
BLAST of Ghe13G12070 vs. ExPASy TrEMBL
Match: A0A1U8NG75_GOSHI (uncharacterized protein LOC107948041 OS=Gossypium hirsutum OX=3635 GN=LOC107948041 PE=4 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 4.201e-83
Identity = 120/147 (81.63%), Postives = 131/147 (89.12%), Query Frame = 0 
Query:    1 MGLRTAIERKIKSLEVYGDSALVIYQFQGKCETRDSKLINYRRLVLGLVEKFDDITFNYLPRDENQMVDTLATLASIIKVNRQEDVKPIQMSICEAPSSCYSIEEEERDDHPWYQDILRYVRKRVYPDQATKNDKRTLRRLACDYVL 147
            MGL+ AIERKIKSLEVYGDSALVIYQ QG+ E RDSKLINYRRLVLGLVE+FDDITFNYL RDENQM D L T  S+IK++RQEDVKPIQMSIC+APS CY+IEEE RDDHPWYQDILRYVR R Y DQAT+N+KR LRRLACDYV+
Sbjct:    1 MGLQAAIERKIKSLEVYGDSALVIYQLQGEWEIRDSKLINYRRLVLGLVEEFDDITFNYLSRDENQMADALVTFTSMIKISRQEDVKPIQMSICKAPSYCYNIEEEVRDDHPWYQDILRYVRNREYSDQATENEKRALRRLACDYVV 147
[Close]
BLAST of Ghe13G12070 vs. ExPASy TrEMBL
Match: A0A1U8PNS5_GOSHI (uncharacterized protein LOC107961106 OS=Gossypium hirsutum OX=3635 GN=LOC107961106 PE=4 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 2.745e-79
Identity = 115/155 (74.19%), Postives = 136/155 (87.74%), Query Frame = 0 
Query:    1 MGLRTAIERKIKSLEVYGDSALVIYQFQGKCETRDSKLINYRRLVLGLVEKFDDITFNYLPRDENQMVDTLATLASIIKVNRQEDVKPIQMSICEAPSSCYSI-EEEERDDHPWYQDILRYVRKRVYPDQATKNDKRTLRRLACDYVLDGEILYK 154
            MG+ TAI+R+IK  EVYGDSALVIYQ +G+ ETRD KLI+YR+L+L L+E FDDITF+YLP+DENQM DTLATL S+IKV+ QED+KPIQMSICEAP+ C ++ EEEERDDH WY DIL+YV+ R YPDQAT+NDKRTLRRLA DYVLDGE+LYK
Sbjct:    1 MGIWTAIDREIKVFEVYGDSALVIYQLKGEWETRDPKLISYRKLILELIEDFDDITFHYLPQDENQMADTLATLVSMIKVSEQEDIKPIQMSICEAPAHCCNVEEEEERDDHLWYHDILQYVKSRAYPDQATENDKRTLRRLASDYVLDGEVLYK 155
[Close]
BLAST of Ghe13G12070 vs. ExPASy TrEMBL
Match: A0A1U8KTN5_GOSHI (uncharacterized protein LOC107919392 OS=Gossypium hirsutum OX=3635 GN=LOC107919392 PE=4 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 7.045e-79
Identity = 117/155 (75.48%), Postives = 136/155 (87.74%), Query Frame = 0 
Query:    1 MGLRTAIERKIKSLEVYGDSALVIYQFQGKCETRDSKLINYRRLVLGLVEKFDDITFNYLPRDENQMVDTLATLASIIKVNRQEDVKPIQMSICEAPSSCYSI-EEEERDDHPWYQDILRYVRKRVYPDQATKNDKRTLRRLACDYVLDGEILYK 154
            MG+R AIERK+K LEVY DSALVIYQ +G+ ETRD KLI+YR+LVL L+E+FD+ITF+YLPRDENQM D LATL S++KVN+QEDVKPIQ+S  EAP+ C +I EEEE+DDHPWYQDILRYV+ R YPDQAT+NDKRTLRRLA DYVLD EILYK
Sbjct:    1 MGIRAAIERKVKVLEVYRDSALVIYQLKGEWETRDLKLISYRKLVLELIEEFDNITFSYLPRDENQMADALATLVSMVKVNKQEDVKPIQISSYEAPAHCCNIDEEEEKDDHPWYQDILRYVKNREYPDQATENDKRTLRRLASDYVLDKEILYK 155
[Close]
BLAST of Ghe13G12070 vs. ExPASy TrEMBL
Match: A0A1U8KXT4_GOSHI (uncharacterized protein LOC107921964 OS=Gossypium hirsutum OX=3635 GN=LOC107921964 PE=4 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 1.356e-78
Identity = 116/158 (73.42%), Postives = 138/158 (87.34%), Query Frame = 0 
Query:    1 MGLRTAIERKIKSLEVYGDSALVIYQFQGKCETRDSKLINYRRLVLGLVEKFDDITFNYLPRDENQMVDTLATLASIIKVNRQEDVKPIQMSICEAPSSCYSI-EEEERDDHPWYQDILRYVRKRVYPDQATKNDKRTLRRLACDYVLDGEILYKDER 157
            MG+R AI+R+IK LEVYGDSALVIYQ +G+ ETRD KLI+YR+L+L L+E+FDDITF+YLPR ENQM D L TLAS+IKVN QED+KPIQMSICEAP+ C ++ EEEE DDHPWY DIL+YV+ R YPDQAT+NDKRTLRRLA DYVLDGE+LYK+ +
Sbjct:  165 MGIRAAIDREIKVLEVYGDSALVIYQLKGEWETRDPKLISYRKLILELIEEFDDITFHYLPRYENQMADALVTLASMIKVNEQEDMKPIQMSICEAPAHCCNVNEEEEIDDHPWYHDILQYVKSRAYPDQATENDKRTLRRLASDYVLDGEVLYKERK 322
[Close]
BLAST of Ghe13G12070 vs. ExPASy TrEMBL
Match: A0A1U8PR14_GOSHI (uncharacterized protein LOC107960956 OS=Gossypium hirsutum OX=3635 GN=LOC107960956 PE=4 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 2.480e-78
Identity = 115/155 (74.19%), Postives = 136/155 (87.74%), Query Frame = 0 
Query:    1 MGLRTAIERKIKSLEVYGDSALVIYQFQGKCETRDSKLINYRRLVLGLVEKFDDITFNYLPRDENQMVDTLATLASIIKVNRQEDVKPIQMSICEAPSSCYSI-EEEERDDHPWYQDILRYVRKRVYPDQATKNDKRTLRRLACDYVLDGEILYK 154
            MG+R AI+R+IK LEV GDSALVIYQ +G+ ETRD KLI+YR+L+L L+EKFDDITF+YLPR ENQM D LATLAS++KVN QED+K IQMSICEAP+ C ++ EEEERDDHPWY DIL+YV+ R YPD+AT+NDKRTLRRLA DYVLDGE+LYK
Sbjct:   65 MGIRAAIDREIKVLEVCGDSALVIYQLKGEWETRDPKLISYRKLILELIEKFDDITFHYLPRSENQMADALATLASMVKVNEQEDMKQIQMSICEAPAHCCNVDEEEERDDHPWYHDILQYVKSRAYPDKATENDKRTLRRLASDYVLDGEVLYK 219
[Close]
BLAST of Ghe13G12070 vs. ExPASy TrEMBL
Match: A0A1U8PY36_GOSHI (uncharacterized protein LOC107963120 OS=Gossypium hirsutum OX=3635 GN=LOC107963120 PE=4 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 2.619e-78
Identity = 112/154 (72.73%), Postives = 134/154 (87.01%), Query Frame = 0 
Query:    1 MGLRTAIERKIKSLEVYGDSALVIYQFQGKCETRDSKLINYRRLVLGLVEKFDDITFNYLPRDENQMVDTLATLASIIKVNRQEDVKPIQMSICEAPSSCYSIEEEERDDHPWYQDILRYVRKRVYPDQATKNDKRTLRRLACDYVLDGEILYK 154
            MG++ A ERKI++LEVYGDSALVIYQ +G+ ETRD KLINYR +VL L+E FD++TF+YLPRDENQM D L TLAS+IK N+QED+KPIQMSI E P+ C +IEEEE+DDHPWYQDIL YVR R YP++AT+NDKRTLR LAC+YVLDG+ILYK
Sbjct:    9 MGIQAARERKIRTLEVYGDSALVIYQLRGEWETRDPKLINYRNIVLELLEAFDNVTFSYLPRDENQMADALVTLASMIKENKQEDMKPIQMSISELPAHCCNIEEEEKDDHPWYQDILWYVRNREYPEKATENDKRTLRMLACEYVLDGDILYK 162
[Close]
BLAST of Ghe13G12070 vs. ExPASy TrEMBL
Match: A0A1U8KPB5_GOSHI (uncharacterized protein LOC107919310 OS=Gossypium hirsutum OX=3635 GN=LOC107919310 PE=4 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 3.491e-78
Identity = 114/154 (74.03%), Postives = 134/154 (87.01%), Query Frame = 0 
Query:    1 MGLRTAIERKIKSLEVYGDSALVIYQFQGKCETRDSKLINYRRLVLGLVEKFDDITFNYLPRDENQMVDTLATLASIIKVNRQEDVKPIQMSICEAPSSCYSIEEEERDDHPWYQDILRYVRKRVYPDQATKNDKRTLRRLACDYVLDGEILYK 154
            MG+R AIERKIK LEVYGDSALVIYQ +G+ ETRD KL+ YR+LVL L+++FD + F YLP+DENQM D LAT+AS+IKVN+ ED+KPIQ+SI E P+SCYSIEEEE DDHPWYQDILRYV+ R YP++ TKND+RTLRRLA DYVLDGEILYK
Sbjct:    1 MGIRVAIERKIKILEVYGDSALVIYQLKGEWETRDPKLVRYRKLVLELIKEFDSVGFCYLPQDENQMADFLATVASMIKVNKPEDMKPIQISIHETPASCYSIEEEENDDHPWYQDILRYVKNREYPNRVTKNDERTLRRLAIDYVLDGEILYK 154
The following BLAST results are available for this feature:
BLAST of Ghe13G12070 vs. ExPASy Swiss-Prot
Analysis Date: 2020-04-17 (BLASTP of WHU_v1_a1 Gossypium herbaceum proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Ghe13G12070 vs. Araport11
Analysis Date: 2020-04-17 (BLASTP of WHU_v1_a1 Gossypium herbaceum proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Ghe13G12070 vs. NCBI nr
Analysis Date: 2020-04-17 (BLASTP of WHU_v1_a1 Gossypium herbaceum proteins vs NCBI nr)
Total hits: 10
Match NameE-valueIdentityDescription
gi|1029012240|ref|XP_016669990.1|4.076e-11097.52PREDICTED: uncharacterized protein LOC107889968 [G... [more]
gi|1050593374|ref|XP_017618114.1|1.370e-10996.27PREDICTED: uncharacterized protein LOC108462712 [G... [more]
gi|1050626100|ref|XP_017635950.1|4.780e-9083.77PREDICTED: uncharacterized protein LOC108478021 [G... [more]
gi|1029083897|ref|XP_016702125.1|4.307e-8681.82PREDICTED: uncharacterized protein LOC107917267 [G... [more]
gi|1050567079|ref|XP_017604116.1|2.062e-8582.35PREDICTED: uncharacterized protein LOC108450858 [G... [more]
gi|1050649085|ref|XP_017647925.1|3.184e-8582.47PREDICTED: uncharacterized protein LOC108488132 [G... [more]
gi|1028995150|ref|XP_016752322.1|1.444e-8484.93PREDICTED: uncharacterized protein LOC107960492 [G... [more]
gi|1050604418|ref|XP_017624678.1|1.270e-8377.92PREDICTED: uncharacterized protein LOC108468299 [G... [more]
gi|1028982043|ref|XP_016738031.1|5.001e-8381.63PREDICTED: uncharacterized protein LOC107948041 [G... [more]
gi|1050619491|ref|XP_017632532.1|7.349e-8379.87PREDICTED: uncharacterized protein LOC108475027 [G... [more]
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BLAST of Ghe13G12070 vs. ExPASy TrEMBL
Analysis Date: 2020-04-17 (BLASTP of WHU_v1_a1 Gossypium herbaceum proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
A0A1U8HVE2_GOSHI3.424e-11097.52uncharacterized protein LOC107889968 OS=Gossypium ... [more]
A0A1U8KI30_GOSHI3.618e-8681.82uncharacterized protein LOC107917267 OS=Gossypium ... [more]
A0A1U8PMB3_GOSHI1.213e-8484.93uncharacterized protein LOC107887881 OS=Gossypium ... [more]
A0A1U8NG75_GOSHI4.201e-8381.63uncharacterized protein LOC107948041 OS=Gossypium ... [more]
A0A1U8PNS5_GOSHI2.745e-7974.19uncharacterized protein LOC107961106 OS=Gossypium ... [more]
A0A1U8KTN5_GOSHI7.045e-7975.48uncharacterized protein LOC107919392 OS=Gossypium ... [more]
A0A1U8KXT4_GOSHI1.356e-7873.42uncharacterized protein LOC107921964 OS=Gossypium ... [more]
A0A1U8PR14_GOSHI2.480e-7874.19uncharacterized protein LOC107960956 OS=Gossypium ... [more]
A0A1U8PY36_GOSHI2.619e-7872.73uncharacterized protein LOC107963120 OS=Gossypium ... [more]
A0A1U8KPB5_GOSHI3.491e-7874.03uncharacterized protein LOC107919310 OS=Gossypium ... [more]
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InterPro
Analysis Name: InterProScan WHU_v1_a1 Gossypium herbaceum proteins
Date Performed: 2020-04-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..92
e-value: 3.7E-16
score: 61.2
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 1..75
e-value: 1.3E-12
score: 47.6
NoneNo IPR availablePANTHERPTHR46387:SF12coord: 1..159
NoneNo IPR availablePANTHERPTHR46387FAMILY NOT NAMEDcoord: 1..159
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..77

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ghe13G12070_WHU-A1_v1 ID=Ghe13G12070_WHU-A1_v1; Name=Ghe13G12070; organism=Gossypium herbaceum; type=mRNA; length=486bp
ATGGGACTCCGAACAGCTATAGAACGAAAGATCAAGTCGTTGGAAGTATA
TGGAGATTCTGCGCTGGTGATTTACCAATTTCAAGGAAAATGTGAGACAA
GAGATTCCAAATTAATCAATTATAGAAGGTTGGTGTTGGGGTTAGTCGAA
AAGTTTGATGATATTACCTTCAATTATCTCCCACGAGATGAAAATCAGAT
GGTAGATACTTTGGCTACTTTGGCTTCCATAATCAAAGTGAACAGACAAG
AAGATGTGAAACCTATTCAGATGAGTATTTGTGAGGCCCCATCTTCTTGT
TATAGTATAGAGGAAGAGGAGAGAGATGATCACCCTTGGTATCAGGATAT
ATTACGATACGTGAGAAAACGTGTATATCCAGACCAAGCAACGAAGAATG
ACAAAAGGACGCTAAGAAGGCTAGCTTGTGATTATGTCTTAGATGGAGAG
ATCCTGTATAAAGATGAAAGGATCAAGTACTATTGA
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protein sequence of Ghe13G12070_WHU-A1_v1

>Ghe13G12070_WHU-A1_v1 ID=Ghe13G12070_WHU-A1_v1; Name=Ghe13G12070_WHU-A1_v1; organism=Gossypium herbaceum; type=polypeptide; length=161bp
MGLRTAIERKIKSLEVYGDSALVIYQFQGKCETRDSKLINYRRLVLGLVE
KFDDITFNYLPRDENQMVDTLATLASIIKVNRQEDVKPIQMSICEAPSSC
YSIEEEERDDHPWYQDILRYVRKRVYPDQATKNDKRTLRRLACDYVLDGE
ILYKDERIKYY
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mRNA from alignment at Chr13:48104712..48105197-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ghe13G12070_WHU-A1_v1 ID=Ghe13G12070_WHU-A1_v1; Name=Ghe13G12070; organism=Gossypium herbaceum; type=mRNA; length=486bp; location=Sequence derived from: Chr13:48104712..48105197- (Gossypium herbaceum
ATGGGACTCCGAACAGCTATAGAACGAAAGATCAAGTCGTTGGAAGTATA
TGGAGATTCTGCGCTGGTGATTTACCAATTTCAAGGAAAATGTGAGACAA
GAGATTCCAAATTAATCAATTATAGAAGGTTGGTGTTGGGGTTAGTCGAA
AAGTTTGATGATATTACCTTCAATTATCTCCCACGAGATGAAAATCAGAT
GGTAGATACTTTGGCTACTTTGGCTTCCATAATCAAAGTGAACAGACAAG
AAGATGTGAAACCTATTCAGATGAGTATTTGTGAGGCCCCATCTTCTTGT
TATAGTATAGAGGAAGAGGAGAGAGATGATCACCCTTGGTATCAGGATAT
ATTACGATACGTGAGAAAACGTGTATATCCAGACCAAGCAACGAAGAATG
ACAAAAGGACGCTAAGAAGGCTAGCTTGTGATTATGTCTTAGATGGAGAG
ATCCTGTATAAAGATGAAAGGATCAAGTACTATTGA
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Coding sequence (CDS) from alignment at Chr13:48104712..48105197-

>Ghe13G12070_WHU-A1_v1 ID=Ghe13G12070_WHU-A1_v1; Name=Ghe13G12070; organism=Gossypium herbaceum; type=CDS; length=486bp; location=Sequence derived from: Chr13:48104712..48105197- (Gossypium herbaceum
ATGGGACTCCGAACAGCTATAGAACGAAAGATCAAGTCGTTGGAAGTATA
TGGAGATTCTGCGCTGGTGATTTACCAATTTCAAGGAAAATGTGAGACAA
GAGATTCCAAATTAATCAATTATAGAAGGTTGGTGTTGGGGTTAGTCGAA
AAGTTTGATGATATTACCTTCAATTATCTCCCACGAGATGAAAATCAGAT
GGTAGATACTTTGGCTACTTTGGCTTCCATAATCAAAGTGAACAGACAAG
AAGATGTGAAACCTATTCAGATGAGTATTTGTGAGGCCCCATCTTCTTGT
TATAGTATAGAGGAAGAGGAGAGAGATGATCACCCTTGGTATCAGGATAT
ATTACGATACGTGAGAAAACGTGTATATCCAGACCAAGCAACGAAGAATG
ACAAAAGGACGCTAAGAAGGCTAGCTTGTGATTATGTCTTAGATGGAGAG
ATCCTGTATAAAGATGAAAGGATCAAGTACTATTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR002156RNaseH_domain
IPR012337RNaseH-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0004523RNA-DNA hybrid ribonuclease activity