Ghe03G23800, Ghe03G23800_WHU-A1_v1 (mRNA) Gossypium herbaceum

Transcript Overview
NameGhe03G23800
Unique NameGhe03G23800_WHU-A1_v1
TypemRNA
OrganismGossypium herbaceum (Cotton (G. herbaceum))
Sequence length267
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr03chromosomeChr03:122580287..122580553 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
bhhwL0193Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bhhwL1151Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bhhwL1691Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bhhwL2340Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
ghthwL0150Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghzhwL0144Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghthwL0831Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghzhwL0799Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghzhwL1336Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghthwL1388Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghzhwL1671Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghthwL1727Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghzhwL1762Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghthwL1820Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghzhwL2997Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghthwL3053Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
hwhwL145Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hbhwL1751Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hwhzR0953Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hbhwL3082Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hwhzR0995Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hwhzR1024Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hwhzR1039Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hwhzR1085Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hwrbR1015Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
hwrbR1097Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
hwrbR1131Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
hwrjR0593Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
hwrjR0629Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
hwrjR0644Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
hwtoR0804Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hwtoR0843Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hwtoR0869Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hwtwR0960Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hwtwR1002Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hwtwR1024Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hwtwR1039Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hwuhR0814Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
hwuhR0855Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
hwuhR0880Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
goshwL0158Gossypium stocksii (E1) genome NSF_v1Gossypium stocksii
goshwL0815Gossypium stocksii (E1) genome NSF_v1Gossypium stocksii
goshwL1559Gossypium stocksii (E1) genome NSF_v1Gossypium stocksii
hwndmR0966Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hwndmR1010Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hwndmR1040Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hwndmR1054Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hwpimR0991Gossypium barbadense (AD2) 'Pima90' genome HEAU_v1Gossypium barbadense
hwpimR1032Gossypium barbadense (AD2) 'Pima90' genome HEAU_v1Gossypium barbadense
hwpimR1064Gossypium barbadense (AD2) 'Pima90' genome HEAU_v1Gossypium barbadense
hwpimR1078Gossypium barbadense (AD2) 'Pima90' genome HEAU_v1Gossypium barbadense
hwpimR1132Gossypium barbadense (AD2) 'Pima90' genome HEAU_v1Gossypium barbadense
barhwL0794Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
barhwL1355Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
barhwL1677Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
barhwL1767Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
barhwL2938Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
b1jhwL0165Gossypium anomalum (B1) genome JAAS_v1.2_a1.1Gossypium anomalum
b1jhwL0839Gossypium anomalum (B1) genome JAAS_v1.2_a1.1Gossypium anomalum
b1jhwL1577Gossypium anomalum (B1) genome JAAS_v1.2_a1.1Gossypium anomalum
aouhwL0133Gossypium herbaceum (A1) 'Wagad' genome USDA_v1Gossypium herbaceum
aouhwL0720Gossypium herbaceum (A1) 'Wagad' genome USDA_v1Gossypium herbaceum
aouhwL1353Gossypium herbaceum (A1) 'Wagad' genome USDA_v1Gossypium herbaceum
gechwL0151Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
gechwL0838Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
gechwL1392Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
gechwL1847Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
hwjmbR0978Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hwjmbR1022Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hwjmbR1054Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hwjmbR1070Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hwpscR0984Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
hwpscR1018Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
hwpscR1027Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
adyhwL0157Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhwL0826Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhwL1413Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhwL1785Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhwL1880Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhwL3151Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
hpfhwL0144Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpfhwL0800Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpfhwL1371Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpfhwL1701Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpfhwL1793Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpfhwL3013Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hwt2tR0802Gossypium raimondii (D5) 'D5-3' Telomere-to-Telomere genome PKU_v1.0Gossypium raimondii
hwt2tR0833Gossypium raimondii (D5) 'D5-3' Telomere-to-Telomere genome PKU_v1.0Gossypium raimondii
hwt2tR0888Gossypium raimondii (D5) 'D5-3' Telomere-to-Telomere genome PKU_v1.0Gossypium raimondii
hwtmhR307Gossypium hirsutum (AD1) 'TM-1' genome HAU_v2.0Gossypium hirsutum
hwtmhR319Gossypium hirsutum (AD1) 'TM-1' genome HAU_v2.0Gossypium hirsutum
d3hhwL0164Gossypium barbadense (AD2) '3-79' genome HAU_v3.0Gossypium barbadense
d3hhwL0829Gossypium barbadense (AD2) '3-79' genome HAU_v3.0Gossypium barbadense
d3hhwL1353Gossypium barbadense (AD2) '3-79' genome HAU_v3.0Gossypium barbadense
d3hhwL1776Gossypium barbadense (AD2) '3-79' genome HAU_v3.0Gossypium barbadense
azmhwL0154Gossypium hirsutum (AD1) 'ZM113' T2T genome CRI_v1.0Gossypium hirsutum
azmhwL0839Gossypium hirsutum (AD1) 'ZM113' T2T genome CRI_v1.0Gossypium hirsutum
azmhwL1399Gossypium hirsutum (AD1) 'ZM113' T2T genome CRI_v1.0Gossypium hirsutum
azmhwL1877Gossypium hirsutum (AD1) 'ZM113' T2T genome CRI_v1.0Gossypium hirsutum

Orthologs
Gene/TranscriptAssemblySpecies
Gbscaffold10628.13.0Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
Ghicr24_A02G065900.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
Gh_A02G065600.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ghe03G23800.geneGhe03G23800.gene_WHU-A1_v1Gossypium herbaceumgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ghe03G23800.CDS1Ghe03G23800.CDS1_WHU-A1_v1Gossypium herbaceumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ghe03G23800Ghe03G23800_WHU-A1_v1-proteinGossypium herbaceumpolypeptide
Ghe03G23800_WHU-A1_v1Ghe03G23800_WHU-A1_v1Gossypium herbaceumpolypeptide


Homology
[Close]
BLAST of Ghe03G23800 vs. ExPASy Swiss-Prot
Match: TMK4_ARATH (Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.126e-21
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 0 
Query:    1 MECVGEGTKGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTL 52
            MEC   G KGM+EFQ EIAVL+K RH  LVALLGYC+NGNERLLVYEYMP+G L
Sbjct:  608 MECAAMGNKGMSEFQAEIAVLTKVRHRHLVALLGYCVNGNERLLVYEYMPQGNL 661
[Close]
BLAST of Ghe03G23800 vs. ExPASy Swiss-Prot
Match: TMK3_ARATH (Receptor-like kinase TMK3 OS=Arabidopsis thaliana OX=3702 GN=TMK3 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.825e-16
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 0 
Query:    1 MECVGEGTKGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTLCIRVKH 58
            ME      KG+ EF+ EI VL+K RH  LVALLGYC++GNERLLVYEYMP+GTL   + H
Sbjct:  615 MESSVVSDKGLTEFKSEITVLTKMRHRHLVALLGYCLDGNERLLVYEYMPQGTLSQHLFH 674
[Close]
BLAST of Ghe03G23800 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Receptor protein kinase TMK1 OS=Arabidopsis thaliana OX=3702 GN=TMK1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.647e-16
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 0 
Query:    9 KGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTL 52
            KG AEF+ EIAVL+K RH  LV LLGYC++GNE+LLVYEYMP+GTL
Sbjct:  626 KGFAEFKSEIAVLTKVRHRHLVTLLGYCLDGNEKLLVYEYMPQGTL 671
[Close]
BLAST of Ghe03G23800 vs. ExPASy Swiss-Prot
Match: TMK2_ARATH (Receptor-like kinase TMK2 OS=Arabidopsis thaliana OX=3702 GN=TMK2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.435e-14
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 0 
Query:    9 KGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTL 52
            KG+ EF+ EIAVL++ RH  LV L GYC+ GNERLLVY+YMP+GTL
Sbjct:  585 KGLDEFKSEIAVLTRVRHRNLVVLHGYCLEGNERLLVYQYMPQGTL 630
[Close]
BLAST of Ghe03G23800 vs. ExPASy Swiss-Prot
Match: PBL5_ARATH (Probable serine/threonine-protein kinase PBL5 OS=Arabidopsis thaliana OX=3702 GN=PBL5 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 4.703e-11
Identity = 29/61 (47.54%), Postives = 42/61 (68.85%), Query Frame = 0 
Query:    7 GTKGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTLCIRVKHQDLIHII 65
            G +G+ EF VE+  LS A H  LV L+G+C  G++RLLVYEYMP+G+L      +D +H++
Sbjct:  138 GVQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPQGSL------EDHLHVL 192
[Close]
BLAST of Ghe03G23800 vs. ExPASy Swiss-Prot
Match: Y5900_ARATH (Putative receptor-like protein kinase At5g39000 OS=Arabidopsis thaliana OX=3702 GN=At5g39000 PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 2.017e-10
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 0 
Query:    9 KGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTL 52
            +G  EF+ E+ +LSK RH  LV+L+GYC   NE +LVYEYMP GTL
Sbjct:  555 QGAKEFETELEMLSKLRHVHLVSLIGYCDEDNEMVLVYEYMPHGTL 600
[Close]
BLAST of Ghe03G23800 vs. ExPASy Swiss-Prot
Match: Y5597_ARATH (Probable receptor-like protein kinase At5g59700 OS=Arabidopsis thaliana OX=3702 GN=At5g59700 PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 2.284e-10
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 0 
Query:    9 KGMAEFQVEIAVLS--KARHLVALLGYCMNGNERLLVYEYMPRGTL 52
            +G+AEF+ EI +LS  + RHLV+L+GYC   NE +LVYEYM  GTL
Sbjct:  518 QGLAEFRTEIEMLSQFRHRHLVSLIGYCDENNEMILVYEYMENGTL 563
[Close]
BLAST of Ghe03G23800 vs. ExPASy Swiss-Prot
Match: Y5389_ARATH (Probable receptor-like protein kinase At5g38990 OS=Arabidopsis thaliana OX=3702 GN=At5g38990 PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 2.525e-10
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 0 
Query:    9 KGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTL 52
            +G  EF  E+ +LSK RH  LV+L+GYC + NE +LVYEYMP GTL
Sbjct:  562 QGAKEFDTELEMLSKLRHVHLVSLIGYCDDDNEMVLVYEYMPHGTL 607
[Close]
BLAST of Ghe03G23800 vs. ExPASy Swiss-Prot
Match: PBL26_ARATH (Probable serine/threonine-protein kinase PBL26 OS=Arabidopsis thaliana OX=3702 GN=PBL26 PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 2.911e-10
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 0 
Query:    7 GTKGMAEFQVEIAVLS--KARHLVALLGYCMNGNERLLVYEYMPRGTL 52
            G +G  EF VE+ +LS    +HLV L+GYC +G++RLLVYEYM RG+L
Sbjct:  114 GLQGNKEFIVEVLMLSLLHHKHLVNLIGYCADGDQRLLVYEYMSRGSL 161
[Close]
BLAST of Ghe03G23800 vs. ExPASy Swiss-Prot
Match: PERK5_ARATH (Proline-rich receptor-like protein kinase PERK5 OS=Arabidopsis thaliana OX=3702 GN=PERK5 PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 2.969e-10
Identity = 26/51 (50.98%), Postives = 39/51 (76.47%), Query Frame = 0 
Query:    4 VGEGTKGMAEFQVEIAVLSKA--RHLVALLGYCMNGNERLLVYEYMPRGTL 52
            +G G +G  EFQ E+ ++S+   RHLV+L+GYC++G +RLLVYE++P  TL
Sbjct:  344 LGSG-QGEREFQAEVDIISRVHHRHLVSLVGYCISGGQRLLVYEFIPNNTL 393
[Close]
BLAST of Ghe03G23800 vs. Araport11
Match: gnl|BL_ORD_ID|24676 (AT3G23750.1 | Leucine-rich repeat protein kinase family protein | Chr3:8558332-8561263 FORWARD LENGTH=928 | 201606)

HSP 1 Score: 89.7373 bits (221), Expect = 2.209e-22
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 0 
Query:    1 MECVGEGTKGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTL 52
            MEC   G KGM+EFQ EIAVL+K RH  LVALLGYC+NGNERLLVYEYMP+G L
Sbjct:  608 MECAAMGNKGMSEFQAEIAVLTKVRHRHLVALLGYCVNGNERLLVYEYMPQGNL 661
[Close]
BLAST of Ghe03G23800 vs. Araport11
Match: gnl|BL_ORD_ID|12813 (AT2G01820.1 | Leucine-rich repeat protein kinase family protein | Chr2:357664-360681 REVERSE LENGTH=943 | 201606)

HSP 1 Score: 75.8702 bits (185), Expect = 1.896e-17
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 0 
Query:    1 MECVGEGTKGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTLCIRVKH 58
            ME      KG+ EF+ EI VL+K RH  LVALLGYC++GNERLLVYEYMP+GTL   + H
Sbjct:  615 MESSVVSDKGLTEFKSEITVLTKMRHRHLVALLGYCLDGNERLLVYEYMPQGTLSQHLFH 674
[Close]
BLAST of Ghe03G23800 vs. Araport11
Match: gnl|BL_ORD_ID|9920 (AT1G66150.1 | transmembrane kinase 1 | Chr1:24631503-24634415 FORWARD LENGTH=942 | 201606)

HSP 1 Score: 74.7146 bits (182), Expect = 4.828e-17
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 0 
Query:    9 KGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTL 52
            KG AEF+ EIAVL+K RH  LV LLGYC++GNE+LLVYEYMP+GTL
Sbjct:  626 KGFAEFKSEIAVLTKVRHRHLVTLLGYCLDGNEKLLVYEYMPQGTL 671
[Close]
BLAST of Ghe03G23800 vs. Araport11
Match: gnl|BL_ORD_ID|4628 (AT1G24650.1 | Leucine-rich repeat protein kinase family protein | Chr1:8734570-8737315 FORWARD LENGTH=886 | 201606)

HSP 1 Score: 68.5514 bits (166), Expect = 5.646e-15
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 0 
Query:    9 KGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTL 52
            KG+ EF+ EIAVL++ RH  LV L GYC+ GNERLLVY+YMP+GTL
Sbjct:  585 KGLDEFKSEIAVLTRVRHRNLVVLHGYCLEGNERLLVYQYMPQGTL 630
[Close]
BLAST of Ghe03G23800 vs. Araport11
Match: gnl|BL_ORD_ID|1435 (AT1G07870.1 | Protein kinase superfamily protein | Chr1:2429933-2431843 REVERSE LENGTH=423 | 201606)

HSP 1 Score: 60.077 bits (144), Expect = 4.885e-12
Identity = 29/61 (47.54%), Postives = 42/61 (68.85%), Query Frame = 0 
Query:    7 GTKGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTLCIRVKHQDLIHII 65
            G +G+ EF VE+  LS A H  LV L+G+C  G++RLLVYEYMP+G+L      +D +H++
Sbjct:  138 GVQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPQGSL------EDHLHVL 192
[Close]
BLAST of Ghe03G23800 vs. Araport11
Match: gnl|BL_ORD_ID|1436 (AT1G07870.2 | Protein kinase superfamily protein | Chr1:2428942-2431843 REVERSE LENGTH=538 | 201606)

HSP 1 Score: 60.077 bits (144), Expect = 5.003e-12
Identity = 29/61 (47.54%), Postives = 42/61 (68.85%), Query Frame = 0 
Query:    7 GTKGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTLCIRVKHQDLIHII 65
            G +G+ EF VE+  LS A H  LV L+G+C  G++RLLVYEYMP+G+L      +D +H++
Sbjct:  138 GVQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPQGSL------EDHLHVL 192
[Close]
BLAST of Ghe03G23800 vs. Araport11
Match: gnl|BL_ORD_ID|42760 (AT5G39000.1 | Malectin/receptor-like protein kinase family protein | Chr5:15611860-15614481 FORWARD LENGTH=873 | 201606)

HSP 1 Score: 58.5362 bits (140), Expect = 2.095e-11
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 0 
Query:    9 KGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTL 52
            +G  EF+ E+ +LSK RH  LV+L+GYC   NE +LVYEYMP GTL
Sbjct:  555 QGAKEFETELEMLSKLRHVHLVSLIGYCDEDNEMVLVYEYMPHGTL 600
[Close]
BLAST of Ghe03G23800 vs. Araport11
Match: gnl|BL_ORD_ID|46574 (AT5G59700.1 | Protein kinase superfamily protein | Chr5:24052613-24055102 REVERSE LENGTH=829 | 201606)

HSP 1 Score: 58.5362 bits (140), Expect = 2.373e-11
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 0 
Query:    9 KGMAEFQVEIAVLS--KARHLVALLGYCMNGNERLLVYEYMPRGTL 52
            +G+AEF+ EI +LS  + RHLV+L+GYC   NE +LVYEYM  GTL
Sbjct:  518 QGLAEFRTEIEMLSQFRHRHLVSLIGYCDENNEMILVYEYMENGTL 563
[Close]
BLAST of Ghe03G23800 vs. Araport11
Match: gnl|BL_ORD_ID|42759 (AT5G38990.1 | Malectin/receptor-like protein kinase family protein | Chr5:15608824-15611466 FORWARD LENGTH=880 | 201606)

HSP 1 Score: 58.151 bits (139), Expect = 2.623e-11
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 0 
Query:    9 KGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTL 52
            +G  EF  E+ +LSK RH  LV+L+GYC + NE +LVYEYMP GTL
Sbjct:  562 QGAKEFDTELEMLSKLRHVHLVSLIGYCDDDNEMVLVYEYMPHGTL 607
[Close]
BLAST of Ghe03G23800 vs. Araport11
Match: gnl|BL_ORD_ID|21486 (AT3G07070.1 | Protein kinase superfamily protein | Chr3:2238455-2240074 FORWARD LENGTH=414 | 201606)

HSP 1 Score: 58.151 bits (139), Expect = 3.024e-11
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 0 
Query:    7 GTKGMAEFQVEIAVLS--KARHLVALLGYCMNGNERLLVYEYMPRGTL 52
            G +G  EF VE+ +LS    +HLV L+GYC +G++RLLVYEYM RG+L
Sbjct:  114 GLQGNKEFIVEVLMLSLLHHKHLVNLIGYCADGDQRLLVYEYMSRGSL 161
[Close]
BLAST of Ghe03G23800 vs. NCBI nr
Match: gi|1029129502|ref|XP_016743060.1| (PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Gossypium hirsutum])

HSP 1 Score: 170.244 bits (430), Expect = 1.271e-52
Identity = 82/84 (97.62%), Postives = 84/84 (100.00%), Query Frame = 0 
Query:    1 MECVGEGTKGMAEFQVEIAVLSKARHLVALLGYCMNGNERLLVYEYMPRGTLCIRVKHQDLIHIIQGYICSARVVIKSTSDILI 84
            MECVGEGTKGMAEFQVEIAVLSKARHLVALLGYC+NGNERLLVYEYMPRGTLCIRVKHQDLIHIIQGYICSARVVIKSTSDIL+
Sbjct:    1 MECVGEGTKGMAEFQVEIAVLSKARHLVALLGYCINGNERLLVYEYMPRGTLCIRVKHQDLIHIIQGYICSARVVIKSTSDILM 84
[Close]
BLAST of Ghe03G23800 vs. NCBI nr
Match: gi|1347704460|gb|PPS03133.1| (hypothetical protein GOBAR_AA17531 [Gossypium barbadense])

HSP 1 Score: 147.132 bits (370), Expect = 1.579e-44
Identity = 70/74 (94.59%), Postives = 71/74 (95.95%), Query Frame = 0 
Query:    1 MECVGEGTKGMAEFQVEIAVLSKARHLVALLGYCMNGNERLLVYEYMPRGTLCIRVKHQDLIHIIQGYICSARV 74
            MECVGEGTKGMAEFQ EIAVLSK RHLVALLGYC+NGNERLLVYEYMPRGTLCI VKHQDLIHIIQGYICSARV
Sbjct:    1 MECVGEGTKGMAEFQAEIAVLSKVRHLVALLGYCINGNERLLVYEYMPRGTLCIWVKHQDLIHIIQGYICSARV 74
[Close]
BLAST of Ghe03G23800 vs. NCBI nr
Match: gi|1344105996|gb|PPD79953.1| (hypothetical protein GOBAR_DD23104 [Gossypium barbadense])

HSP 1 Score: 103.219 bits (256), Expect = 1.259e-23
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 0 
Query:    1 MECVGEGTKGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTL 52
            MECVG+GTKGMAEFQ EIAVLSK RH  LVALLGYC+NGNERLLVYEYMPRGTL
Sbjct:  538 MECVGKGTKGMAEFQAEIAVLSKVRHRHLVALLGYCINGNERLLVYEYMPRGTL 591
[Close]
BLAST of Ghe03G23800 vs. NCBI nr
Match: gi|1029018352|ref|XP_016673008.1| (PREDICTED: receptor-like kinase TMK4 [Gossypium hirsutum])

HSP 1 Score: 103.219 bits (256), Expect = 1.263e-23
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 0 
Query:    1 MECVGEGTKGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTL 52
            MECVG+GTKGMAEFQ EIAVLSK RH  LVALLGYC+NGNERLLVYEYMPRGTL
Sbjct:  617 MECVGKGTKGMAEFQAEIAVLSKVRHRHLVALLGYCINGNERLLVYEYMPRGTL 670
[Close]
BLAST of Ghe03G23800 vs. NCBI nr
Match: gi|823166328|ref|XP_012483131.1| (PREDICTED: probable receptor protein kinase TMK1 [Gossypium raimondii] >gi|763770666|gb|KJB37881.1| hypothetical protein B456_006G224800 [Gossypium raimondii])

HSP 1 Score: 103.219 bits (256), Expect = 1.263e-23
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 0 
Query:    1 MECVGEGTKGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTL 52
            MECVG+GTKGMAEFQ EIAVLSK RH  LVALLGYC+NGNERLLVYEYMPRGTL
Sbjct:  619 MECVGKGTKGMAEFQAEIAVLSKVRHRHLVALLGYCINGNERLLVYEYMPRGTL 672
[Close]
BLAST of Ghe03G23800 vs. NCBI nr
Match: gi|1347702481|gb|PPS01465.1| (hypothetical protein GOBAR_AA19184 [Gossypium barbadense])

HSP 1 Score: 101.679 bits (252), Expect = 3.268e-23
Identity = 47/54 (87.04%), Postives = 50/54 (92.59%), Query Frame = 0 
Query:    1 MECVGEGTKGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTL 52
            MECVG+GTKGM+EFQ EIAVLSK RH  LVALLGYC+NGNERLLVYEYMPRGTL
Sbjct:  568 MECVGKGTKGMSEFQAEIAVLSKVRHRHLVALLGYCINGNERLLVYEYMPRGTL 621
[Close]
BLAST of Ghe03G23800 vs. NCBI nr
Match: gi|1050576370|ref|XP_017609113.1| (PREDICTED: receptor-like kinase TMK4 [Gossypium arboreum])

HSP 1 Score: 101.679 bits (252), Expect = 3.276e-23
Identity = 47/54 (87.04%), Postives = 50/54 (92.59%), Query Frame = 0 
Query:    1 MECVGEGTKGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTL 52
            MECVG+GTKGM+EFQ EIAVLSK RH  LVALLGYC+NGNERLLVYEYMPRGTL
Sbjct:  626 MECVGKGTKGMSEFQAEIAVLSKVRHRHLVALLGYCINGNERLLVYEYMPRGTL 679
[Close]
BLAST of Ghe03G23800 vs. NCBI nr
Match: gi|508713220|gb|EOY05117.1| (Leucine-rich repeat protein kinase family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 95.5153 bits (236), Expect = 6.310e-21
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 0 
Query:    1 MECVGEGTKGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTL 52
            MECV  GTKGM EFQ EIAVL+K RH  LVALLGYC+NGNERLLVYEYMP+GTL
Sbjct:  604 MECVATGTKGMNEFQAEIAVLTKVRHRHLVALLGYCINGNERLLVYEYMPKGTL 657
[Close]
BLAST of Ghe03G23800 vs. NCBI nr
Match: gi|1063488299|ref|XP_017975540.1| (PREDICTED: receptor-like kinase TMK4 [Theobroma cacao])

HSP 1 Score: 95.5153 bits (236), Expect = 6.364e-21
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 0 
Query:    1 MECVGEGTKGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTL 52
            MECV  GTKGM EFQ EIAVL+K RH  LVALLGYC+NGNERLLVYEYMP+GTL
Sbjct:  604 MECVATGTKGMNEFQAEIAVLTKVRHRHLVALLGYCINGNERLLVYEYMPKGTL 657
[Close]
BLAST of Ghe03G23800 vs. NCBI nr
Match: gi|508713219|gb|EOY05116.1| (Leucine-rich repeat protein kinase family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 95.5153 bits (236), Expect = 6.364e-21
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 0 
Query:    1 MECVGEGTKGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTL 52
            MECV  GTKGM EFQ EIAVL+K RH  LVALLGYC+NGNERLLVYEYMP+GTL
Sbjct:  604 MECVATGTKGMNEFQAEIAVLTKVRHRHLVALLGYCINGNERLLVYEYMPKGTL 657
[Close]
BLAST of Ghe03G23800 vs. ExPASy TrEMBL
Match: A0A1U8NW22_GOSHI (G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 OS=Gossypium hirsutum OX=3635 GN=LOC107952305 PE=4 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.068e-52
Identity = 82/84 (97.62%), Postives = 84/84 (100.00%), Query Frame = 0 
Query:    1 MECVGEGTKGMAEFQVEIAVLSKARHLVALLGYCMNGNERLLVYEYMPRGTLCIRVKHQDLIHIIQGYICSARVVIKSTSDILI 84
            MECVGEGTKGMAEFQVEIAVLSKARHLVALLGYC+NGNERLLVYEYMPRGTLCIRVKHQDLIHIIQGYICSARVVIKSTSDIL+
Sbjct:    1 MECVGEGTKGMAEFQVEIAVLSKARHLVALLGYCINGNERLLVYEYMPRGTLCIRVKHQDLIHIIQGYICSARVVIKSTSDILM 84
[Close]
BLAST of Ghe03G23800 vs. ExPASy TrEMBL
Match: A0A2P5XIG4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA17531 PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.326e-44
Identity = 70/74 (94.59%), Postives = 71/74 (95.95%), Query Frame = 0 
Query:    1 MECVGEGTKGMAEFQVEIAVLSKARHLVALLGYCMNGNERLLVYEYMPRGTLCIRVKHQDLIHIIQGYICSARV 74
            MECVGEGTKGMAEFQ EIAVLSK RHLVALLGYC+NGNERLLVYEYMPRGTLCI VKHQDLIHIIQGYICSARV
Sbjct:    1 MECVGEGTKGMAEFQAEIAVLSKVRHLVALLGYCINGNERLLVYEYMPRGTLCIWVKHQDLIHIIQGYICSARV 74
[Close]
BLAST of Ghe03G23800 vs. ExPASy TrEMBL
Match: A0A2P5QZI1_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD23104 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.057e-23
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 0 
Query:    1 MECVGEGTKGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTL 52
            MECVG+GTKGMAEFQ EIAVLSK RH  LVALLGYC+NGNERLLVYEYMPRGTL
Sbjct:  538 MECVGKGTKGMAEFQAEIAVLSKVRHRHLVALLGYCINGNERLLVYEYMPRGTL 591
[Close]
BLAST of Ghe03G23800 vs. ExPASy TrEMBL
Match: A0A1U8I9S2_GOSHI (receptor-like kinase TMK4 OS=Gossypium hirsutum OX=3635 GN=LOC107892436 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.061e-23
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 0 
Query:    1 MECVGEGTKGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTL 52
            MECVG+GTKGMAEFQ EIAVLSK RH  LVALLGYC+NGNERLLVYEYMPRGTL
Sbjct:  617 MECVGKGTKGMAEFQAEIAVLSKVRHRHLVALLGYCINGNERLLVYEYMPRGTL 670
[Close]
BLAST of Ghe03G23800 vs. ExPASy TrEMBL
Match: A0A0D2S825_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G224800 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.061e-23
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 0 
Query:    1 MECVGEGTKGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTL 52
            MECVG+GTKGMAEFQ EIAVLSK RH  LVALLGYC+NGNERLLVYEYMPRGTL
Sbjct:  619 MECVGKGTKGMAEFQAEIAVLSKVRHRHLVALLGYCINGNERLLVYEYMPRGTL 672
[Close]
BLAST of Ghe03G23800 vs. ExPASy TrEMBL
Match: A0A2P5XDP2_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA19184 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.745e-23
Identity = 47/54 (87.04%), Postives = 50/54 (92.59%), Query Frame = 0 
Query:    1 MECVGEGTKGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTL 52
            MECVG+GTKGM+EFQ EIAVLSK RH  LVALLGYC+NGNERLLVYEYMPRGTL
Sbjct:  568 MECVGKGTKGMSEFQAEIAVLSKVRHRHLVALLGYCINGNERLLVYEYMPRGTL 621
[Close]
BLAST of Ghe03G23800 vs. ExPASy TrEMBL
Match: A0A061EL76_THECC (Leucine-rich repeat protein kinase family protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_020205 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.300e-21
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 0 
Query:    1 MECVGEGTKGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTL 52
            MECV  GTKGM EFQ EIAVL+K RH  LVALLGYC+NGNERLLVYEYMP+GTL
Sbjct:  604 MECVATGTKGMNEFQAEIAVLTKVRHRHLVALLGYCINGNERLLVYEYMPKGTL 657
[Close]
BLAST of Ghe03G23800 vs. ExPASy TrEMBL
Match: A0A061EJT4_THECC (Leucine-rich repeat protein kinase family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_020205 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.346e-21
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 0 
Query:    1 MECVGEGTKGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTL 52
            MECV  GTKGM EFQ EIAVL+K RH  LVALLGYC+NGNERLLVYEYMP+GTL
Sbjct:  604 MECVATGTKGMNEFQAEIAVLTKVRHRHLVALLGYCINGNERLLVYEYMPKGTL 657
[Close]
BLAST of Ghe03G23800 vs. ExPASy TrEMBL
Match: A0A2P5QP42_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD26741 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 9.202e-21
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 0 
Query:    1 MECVGEGTKGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTL 52
            MECV  GTKGM EFQ EIAVL+K RH  LVALLGYC+NGNERLLVYEYMP+GTL
Sbjct:  569 MECVSTGTKGMNEFQAEIAVLTKVRHRHLVALLGYCINGNERLLVYEYMPQGTL 622
[Close]
BLAST of Ghe03G23800 vs. ExPASy TrEMBL
Match: A0A2P5YWL4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA00579 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 9.202e-21
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 0 
Query:    1 MECVGEGTKGMAEFQVEIAVLSKARH--LVALLGYCMNGNERLLVYEYMPRGTL 52
            MECV  GTKGM EFQ EIAVL+K RH  LVALLGYC+NGNERLLVYEYMP+GTL
Sbjct:  569 MECVSTGTKGMNEFQAEIAVLTKVRHRHLVALLGYCINGNERLLVYEYMPQGTL 622
The following BLAST results are available for this feature:
BLAST of Ghe03G23800 vs. ExPASy Swiss-Prot
Analysis Date: 2020-04-17 (BLASTP of WHU_v1_a1 Gossypium herbaceum proteins vs UniProt Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
TMK4_ARATH2.126e-2175.93Receptor-like kinase TMK4 OS=Arabidopsis thaliana ... [more]
TMK3_ARATH1.825e-1661.67Receptor-like kinase TMK3 OS=Arabidopsis thaliana ... [more]
TMK1_ARATH4.647e-1673.91Receptor protein kinase TMK1 OS=Arabidopsis thalia... [more]
TMK2_ARATH5.435e-1467.39Receptor-like kinase TMK2 OS=Arabidopsis thaliana ... [more]
PBL5_ARATH4.703e-1147.54Probable serine/threonine-protein kinase PBL5 OS=A... [more]
Y5900_ARATH2.017e-1058.70Putative receptor-like protein kinase At5g39000 OS... [more]
Y5597_ARATH2.284e-1058.70Probable receptor-like protein kinase At5g59700 OS... [more]
Y5389_ARATH2.525e-1058.70Probable receptor-like protein kinase At5g38990 OS... [more]
PBL26_ARATH2.911e-1056.25Probable serine/threonine-protein kinase PBL26 OS=... [more]
PERK5_ARATH2.969e-1050.98Proline-rich receptor-like protein kinase PERK5 OS... [more]
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BLAST of Ghe03G23800 vs. Araport11
Analysis Date: 2020-04-17 (BLASTP of WHU_v1_a1 Gossypium herbaceum proteins vs arabidopsis Araport11)
Total hits: 10
Match NameE-valueIdentityDescription
gnl|BL_ORD_ID|246762.209e-2275.93AT3G23750.1 | Leucine-rich repeat protein kinase f... [more]
gnl|BL_ORD_ID|128131.896e-1761.67AT2G01820.1 | Leucine-rich repeat protein kinase f... [more]
gnl|BL_ORD_ID|99204.828e-1773.91AT1G66150.1 | transmembrane kinase 1 | Chr1:246315... [more]
gnl|BL_ORD_ID|46285.646e-1567.39AT1G24650.1 | Leucine-rich repeat protein kinase f... [more]
gnl|BL_ORD_ID|14354.885e-1247.54AT1G07870.1 | Protein kinase superfamily protein |... [more]
gnl|BL_ORD_ID|14365.003e-1247.54AT1G07870.2 | Protein kinase superfamily protein |... [more]
gnl|BL_ORD_ID|427602.095e-1158.70AT5G39000.1 | Malectin/receptor-like protein kinas... [more]
gnl|BL_ORD_ID|465742.373e-1158.70AT5G59700.1 | Protein kinase superfamily protein |... [more]
gnl|BL_ORD_ID|427592.623e-1158.70AT5G38990.1 | Malectin/receptor-like protein kinas... [more]
gnl|BL_ORD_ID|214863.024e-1156.25AT3G07070.1 | Protein kinase superfamily protein |... [more]
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BLAST of Ghe03G23800 vs. NCBI nr
Analysis Date: 2020-04-17 (BLASTP of WHU_v1_a1 Gossypium herbaceum proteins vs NCBI nr)
Total hits: 10
Match NameE-valueIdentityDescription
gi|1029129502|ref|XP_016743060.1|1.271e-5297.62PREDICTED: G-type lectin S-receptor-like serine/th... [more]
gi|1347704460|gb|PPS03133.1|1.579e-4494.59hypothetical protein GOBAR_AA17531 [Gossypium barb... [more]
gi|1344105996|gb|PPD79953.1|1.259e-2388.89hypothetical protein GOBAR_DD23104 [Gossypium barb... [more]
gi|1029018352|ref|XP_016673008.1|1.263e-2388.89PREDICTED: receptor-like kinase TMK4 [Gossypium hi... [more]
gi|823166328|ref|XP_012483131.1|1.263e-2388.89PREDICTED: probable receptor protein kinase TMK1 [... [more]
gi|1347702481|gb|PPS01465.1|3.268e-2387.04hypothetical protein GOBAR_AA19184 [Gossypium barb... [more]
gi|1050576370|ref|XP_017609113.1|3.276e-2387.04PREDICTED: receptor-like kinase TMK4 [Gossypium ar... [more]
gi|508713220|gb|EOY05117.1|6.310e-2181.48Leucine-rich repeat protein kinase family protein ... [more]
gi|1063488299|ref|XP_017975540.1|6.364e-2181.48PREDICTED: receptor-like kinase TMK4 [Theobroma ca... [more]
gi|508713219|gb|EOY05116.1|6.364e-2181.48Leucine-rich repeat protein kinase family protein ... [more]
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BLAST of Ghe03G23800 vs. ExPASy TrEMBL
Analysis Date: 2020-04-17 (BLASTP of WHU_v1_a1 Gossypium herbaceum proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
A0A1U8NW22_GOSHI1.068e-5297.62G-type lectin S-receptor-like serine/threonine-pro... [more]
A0A2P5XIG4_GOSBA1.326e-4494.59Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A2P5QZI1_GOSBA1.057e-2388.89Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A1U8I9S2_GOSHI1.061e-2388.89receptor-like kinase TMK4 OS=Gossypium hirsutum OX... [more]
A0A0D2S825_GOSRA1.061e-2388.89Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A2P5XDP2_GOSBA2.745e-2387.04Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A061EL76_THECC5.300e-2181.48Leucine-rich repeat protein kinase family protein ... [more]
A0A061EJT4_THECC5.346e-2181.48Leucine-rich repeat protein kinase family protein ... [more]
A0A2P5QP42_GOSBA9.202e-2181.48Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A2P5YWL4_GOSBA9.202e-2181.48Uncharacterized protein OS=Gossypium barbadense OX... [more]
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InterPro
Analysis Name: InterProScan WHU_v1_a1 Gossypium herbaceum proteins
Date Performed: 2020-04-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.200.20coord: 3..47
e-value: 1.2E-11
score: 46.6
NoneNo IPR availablePANTHERPTHR27001:SF843RECEPTOR-LIKE KINASE TMK4coord: 1..53
NoneNo IPR availablePANTHERPTHR27001FAMILY NOT NAMEDcoord: 1..53
IPR011009Protein kinase-like domain superfamilySUPERFAMILY56112Protein kinase-like (PK-like)coord: 8..60

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ghe03G23800_WHU-A1_v1 ID=Ghe03G23800_WHU-A1_v1; Name=Ghe03G23800; organism=Gossypium herbaceum; type=mRNA; length=267bp
ATGGAATGTGTTGGTGAAGGTACTAAAGGAATGGCTGAGTTCCAAGTTGA
AATTGCAGTGCTTTCAAAGGCTAGGCATTTGGTTGCTCTTTTAGGTTATT
GTATGAATGGTAATGAGAGGCTTTTGGTTTATGAGTACATGCCTCGTGGT
ACCCTTTGTATCCGGGTTAAGCATCAGGATCTTATACATATTATTCAGGG
CTACATCTGTAGTGCAAGAGTTGTCATAAAATCTACATCAGACATCTTAA
TCACTACAGGAAAATAG
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protein sequence of Ghe03G23800_WHU-A1_v1

>Ghe03G23800_WHU-A1_v1 ID=Ghe03G23800_WHU-A1_v1; Name=Ghe03G23800_WHU-A1_v1; organism=Gossypium herbaceum; type=polypeptide; length=88bp
MECVGEGTKGMAEFQVEIAVLSKARHLVALLGYCMNGNERLLVYEYMPRG
TLCIRVKHQDLIHIIQGYICSARVVIKSTSDILITTGK
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mRNA from alignment at Chr03:122580287..122580553+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ghe03G23800_WHU-A1_v1 ID=Ghe03G23800_WHU-A1_v1; Name=Ghe03G23800; organism=Gossypium herbaceum; type=mRNA; length=267bp; location=Sequence derived from: Chr03:122580287..122580553+ (Gossypium herbaceum
ATGGAATGTGTTGGTGAAGGTACTAAAGGAATGGCTGAGTTCCAAGTTGA
AATTGCAGTGCTTTCAAAGGCTAGGCATTTGGTTGCTCTTTTAGGTTATT
GTATGAATGGTAATGAGAGGCTTTTGGTTTATGAGTACATGCCTCGTGGT
ACCCTTTGTATCCGGGTTAAGCATCAGGATCTTATACATATTATTCAGGG
CTACATCTGTAGTGCAAGAGTTGTCATAAAATCTACATCAGACATCTTAA
TCACTACAGGAAAATAG
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Coding sequence (CDS) from alignment at Chr03:122580287..122580553+

>Ghe03G23800_WHU-A1_v1 ID=Ghe03G23800_WHU-A1_v1; Name=Ghe03G23800; organism=Gossypium herbaceum; type=CDS; length=267bp; location=Sequence derived from: Chr03:122580287..122580553+ (Gossypium herbaceum
ATGGAATGTGTTGGTGAAGGTACTAAAGGAATGGCTGAGTTCCAAGTTGA
AATTGCAGTGCTTTCAAAGGCTAGGCATTTGGTTGCTCTTTTAGGTTATT
GTATGAATGGTAATGAGAGGCTTTTGGTTTATGAGTACATGCCTCGTGGT
ACCCTTTGTATCCGGGTTAAGCATCAGGATCTTATACATATTATTCAGGG
CTACATCTGTAGTGCAAGAGTTGTCATAAAATCTACATCAGACATCTTAA
TCACTACAGGAAAATAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR011009Kinase-like_dom_sf