rna-gnl|WGS_VKGE|Gotom.D13G205100.1, rna-gnl|WGS_VKGE|Gotom.D13G205100.1_HGS-AD3_v1.1 (mRNA) Gossypium tomentosum

Transcript Overview
Namerna-gnl|WGS_VKGE|Gotom.D13G205100.1
Unique Namerna-gnl|WGS_VKGE|Gotom.D13G205100.1_HGS-AD3_v1.1
TypemRNA
OrganismGossypium tomentosum ()
Producthypothetical protein
Cross References
External references for this mRNA
DatabaseAccession
PhytozomeGotom.D13G205100
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM017635.1chromosomeCM017635.1:52739028..52739270 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
hntoL0627Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hntoL1705Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hntoL2398Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
rjtoL0518Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
totoL0701Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
rjtoL0875Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
totoL1578Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
totoL1776Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
totoR1916Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
totwR2758Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
totwR2770Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
totwR2823Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
totwR2831Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
totwR2846Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
totwR2887Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
touhR2274Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
touhR2283Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
touhR2342Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
touhR2377Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
dqitoL0924Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dootoL0381Gossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
dootoL0634Gossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
d6ctoL0971Gossypium gossypioides (D6) genome CRI_v1Gossypium gossypioides
d8ctoL0704Gossypium trilobum (D8) genome CRI_v1Gossypium trilobum
d8ctoL0976Gossypium trilobum (D8) genome CRI_v1Gossypium trilobum
t2ttoL0654Gossypium raimondii (D5) 'D5-3' Telomere-to-Telomere genome PKU_v1.0Gossypium raimondii
t2ttoL1504Gossypium raimondii (D5) 'D5-3' Telomere-to-Telomere genome PKU_v1.0Gossypium raimondii

Orthologs
Gene/TranscriptAssemblySpecies
rna-gnl|WGS:JABEZX|Golob_00031584-RAGossypium lobatum (D7) genome ISU_v1Gossypium lobatum
Gorai.013G194000.1Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
Ggos_13G001982.mRNA1Gossypium gossypioides (D6) genome CRI_v1Gossypium gossypioides
Gtri_13G001965.mRNA1Gossypium trilobum (D8) genome CRI_v1Gossypium trilobum
GR13G3101.t1Gossypium raimondii (D5) 'D5-3' Telomere-to-Telomere genome PKU_v1.0Gossypium raimondii
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-ES332_D13G205100v1gene-ES332_D13G205100v1_HGS-AD3_v1.1Gossypium tomentosumgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-gnl|WGS_VKGE|Gotom.D13G205100.1-1exon-gnl|WGS_VKGE|Gotom.D13G205100.1-1_HGS-AD3_v1.1Gossypium tomentosumexon
exon-gnl|WGS_VKGE|Gotom.D13G205100.1-2exon-gnl|WGS_VKGE|Gotom.D13G205100.1-2_HGS-AD3_v1.1Gossypium tomentosumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-TYH35619.1cds-TYH35619.1_HGS-AD3_v1.1Gossypium tomentosumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-gnl|WGS_VKGE|Gotom.D13G205100.1rna-gnl|WGS_VKGE|Gotom.D13G205100.1_HGS-AD3_v1.1-proteinGossypium tomentosumpolypeptide
rna-gnl|WGS_VKGE|Gotom.D13G205100.1_HGS-AD3_v1.1rna-gnl|WGS_VKGE|Gotom.D13G205100.1_HGS-AD3_v1.1Gossypium tomentosumpolypeptide


Homology
[Close]
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G205100.1 vs. NCBI nr
Match: gi|763815553|gb|KJB82405.1| (hypothetical protein B456_013G194000, partial [Gossypium raimondii])

HSP 1 Score: 117.472 bits (293), Expect = 5.459e-33
Identity = 64/80 (80.00%), Postives = 64/80 (80.00%), Query Frame = 0 
Query:    1 MPEITKIILSTSAEMKAEEVGKITIQCIKSGT-----------MAIAKAGLSPQRCFIRASLEVAFAGLFRFVALLLQWN 69
            MPEITKIILSTS EMKAEEVGKITIQ IK G            MAIA AGLSPQRCFIRASLEVAFAGLFRFVALLLQWN
Sbjct:    4 MPEITKIILSTSVEMKAEEVGKITIQGIKLGNFNIPCKLDGRAMAIAIAGLSPQRCFIRASLEVAFAGLFRFVALLLQWN 83
[Close]
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G205100.1 vs. NCBI nr
Match: gi|823225948|ref|XP_012445788.1| (PREDICTED: 3-dehydrosphinganine reductase TSC10A-like [Gossypium raimondii] >gi|763792145|gb|KJB59141.1| hypothetical protein B456_009G240900 [Gossypium raimondii])

HSP 1 Score: 112.464 bits (280), Expect = 2.110e-28
Identity = 59/80 (73.75%), Postives = 61/80 (76.25%), Query Frame = 0 
Query:    1 MPEITKIILSTSAEMKAEEVGKITIQCIKSGT-----------MAIAKAGLSPQRCFIRASLEVAFAGLFRFVALLLQWN 69
            MPEITKII STS EMKAEEVGKITIQ IKSG+           +AIA AGLSPQRCFI ASLEV F GLFRFVAL LQWN
Sbjct:  225 MPEITKIISSTSTEMKAEEVGKITIQGIKSGSFIIPCKLDGRALAIATAGLSPQRCFIMASLEVVFVGLFRFVALFLQWN 304
[Close]
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G205100.1 vs. NCBI nr
Match: gi|1050566993|ref|XP_017604070.1| (PREDICTED: 3-dehydrosphinganine reductase TSC10A-like [Gossypium arboreum] >gi|728849820|gb|KHG29263.1| 3-ketodihydrosphingosine reductase [Gossypium arboreum])

HSP 1 Score: 112.464 bits (280), Expect = 2.186e-28
Identity = 60/80 (75.00%), Postives = 62/80 (77.50%), Query Frame = 0 
Query:    1 MPEITKIILSTSAEMKAEEVGKITIQCIKSGT-----------MAIAKAGLSPQRCFIRASLEVAFAGLFRFVALLLQWN 69
            MPEIT II STSA MKAEEVGKITIQ IKSG+           +AIA AGLSPQRCFI ASLEV FAGLFRFVALLLQWN
Sbjct:  227 MPEITNIISSTSAGMKAEEVGKITIQGIKSGSFSIPCKLDGRALAIATAGLSPQRCFIMASLEVVFAGLFRFVALLLQWN 306
[Close]
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G205100.1 vs. NCBI nr
Match: gi|1347676614|gb|PPR81680.1| (hypothetical protein GOBAR_AA39035 [Gossypium barbadense])

HSP 1 Score: 97.8265 bits (242), Expect = 3.707e-24
Identity = 53/80 (66.25%), Postives = 59/80 (73.75%), Query Frame = 0 
Query:    1 MPEITKIILSTSAEMKAEEVGKITIQCIKSGT-----------MAIAKAGLSPQRCFIRASLEVAFAGLFRFVALLLQWN 69
            MPEITKIIL +S  MKAEEVGKITIQ IKSG+           +AIA AGLSPQ  F+ AS+EV FAGLFRF+ALLLQW 
Sbjct:   72 MPEITKIILESSPGMKAEEVGKITIQGIKSGSFSIPCRLDGQAVAIATAGLSPQTSFLMASIEVVFAGLFRFLALLLQWR 151

HSP 2 Score: 72.7886 bits (177), Expect = 2.071e-14
Identity = 42/67 (62.69%), Postives = 47/67 (70.15%), Query Frame = 0 
Query:    1 MPEITKIILSTSAEMKAEEVGKITIQCIKSGT-----------MAIAKAGLSPQRCFIRASLEVAFA 56
            MPEITKIIL +S  MKAEEVGKITIQ IKSG+           +AIA AGLSPQ  F+ AS+EV FA
Sbjct:    1 MPEITKIILESSPGMKAEEVGKITIQGIKSGSFSIPCRLDGQAVAIATAGLSPQTSFLMASIEVVFA 67
[Close]
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G205100.1 vs. NCBI nr
Match: gi|823267634|ref|XP_012466506.1| (PREDICTED: 3-dehydrosphinganine reductase TSC10B-like isoform X2 [Gossypium raimondii] >gi|763817682|gb|KJB84461.1| hypothetical protein B456_N027600 [Gossypium raimondii])

HSP 1 Score: 100.523 bits (249), Expect = 6.989e-24
Identity = 54/79 (68.35%), Postives = 59/79 (74.68%), Query Frame = 0 
Query:    1 MPEITKIILSTSAEMKAEEVGKITIQCIKSGT-----------MAIAKAGLSPQRCFIRASLEVAFAGLFRFVALLLQW 68
            MPEITKIIL +S  MKAEEVGKITIQ IKSG+           +AIA AGLSPQ  F+ AS+EV FAGLFRFVALLLQW
Sbjct:  221 MPEITKIILESSPGMKAEEVGKITIQGIKSGSFSIPCRLDGRAVAIATAGLSPQTSFLMASIEVVFAGLFRFVALLLQW 299
[Close]
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G205100.1 vs. NCBI nr
Match: gi|823267632|ref|XP_012466505.1| (PREDICTED: 3-dehydrosphinganine reductase TSC10B-like isoform X1 [Gossypium raimondii])

HSP 1 Score: 100.523 bits (249), Expect = 7.192e-24
Identity = 54/79 (68.35%), Postives = 59/79 (74.68%), Query Frame = 0 
Query:    1 MPEITKIILSTSAEMKAEEVGKITIQCIKSGT-----------MAIAKAGLSPQRCFIRASLEVAFAGLFRFVALLLQW 68
            MPEITKIIL +S  MKAEEVGKITIQ IKSG+           +AIA AGLSPQ  F+ AS+EV FAGLFRFVALLLQW
Sbjct:  225 MPEITKIILESSPGMKAEEVGKITIQGIKSGSFSIPCRLDGRAVAIATAGLSPQTSFLMASIEVVFAGLFRFVALLLQW 303
[Close]
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G205100.1 vs. NCBI nr
Match: gi|1204917608|ref|XP_021291589.1| (3-dehydrosphinganine reductase TSC10B-like [Herrania umbratica])

HSP 1 Score: 87.8113 bits (216), Expect = 3.425e-19
Identity = 48/80 (60.00%), Postives = 54/80 (67.50%), Query Frame = 0 
Query:    1 MPEITKIILSTSAEMKAEEVGKITIQCIKSG-----------TMAIAKAGLSPQRCFIRASLEVAFAGLFRFVALLLQWN 69
            MPE+TKII+  S  MKAEE+GKIT+  IKSG           T AIA AG+SPQR F+ ASLEV FAGL RF  LL QWN
Sbjct:  221 MPELTKIIVG-SGGMKAEEIGKITVNGIKSGSFGIPCNFLGQTFAIATAGVSPQRSFLMASLEVVFAGLSRFGGLLFQWN 299
[Close]
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G205100.1 vs. NCBI nr
Match: gi|1063484286|ref|XP_017974800.1| (PREDICTED: 3-dehydrosphinganine reductase TSC10B [Theobroma cacao])

HSP 1 Score: 87.0409 bits (214), Expect = 8.499e-19
Identity = 47/80 (58.75%), Postives = 54/80 (67.50%), Query Frame = 0 
Query:    1 MPEITKIILSTSAEMKAEEVGKITIQCIKSG-----------TMAIAKAGLSPQRCFIRASLEVAFAGLFRFVALLLQWN 69
            MPE++KII+  S  MKAEE+GKIT+  IK G           T AIA AG+SPQR F+ ASLEV FAGLFRF  LL QWN
Sbjct:  225 MPELSKIIVG-SGVMKAEEIGKITVDGIKCGSFSIPCNFLGQTFAIATAGVSPQRSFLMASLEVVFAGLFRFGGLLFQWN 303
[Close]
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G205100.1 vs. NCBI nr
Match: gi|508713677|gb|EOY05574.1| (Short-chain dehydrogenase, putative [Theobroma cacao])

HSP 1 Score: 86.6557 bits (213), Expect = 9.022e-19
Identity = 47/80 (58.75%), Postives = 54/80 (67.50%), Query Frame = 0 
Query:    1 MPEITKIILSTSAEMKAEEVGKITIQCIKSG-----------TMAIAKAGLSPQRCFIRASLEVAFAGLFRFVALLLQWN 69
            MPE++KII+  S  MKAEE+GKIT+  IK G           T AIA AG+SPQR F+ ASLEV FAGLFRF  LL QWN
Sbjct:  223 MPELSKIIVG-SGVMKAEEIGKITVDGIKCGSFSIPCNFLGQTFAIATAGVSPQRSFLMASLEVVFAGLFRFGGLLFQWN 301
[Close]
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G205100.1 vs. NCBI nr
Match: gi|1137248531|gb|OMP06450.1| (Short-chain dehydrogenase/reductase SDR, partial [Corchorus capsularis])

HSP 1 Score: 86.6557 bits (213), Expect = 1.068e-18
Identity = 46/80 (57.50%), Postives = 56/80 (70.00%), Query Frame = 0 
Query:    1 MPEITKIILSTSAEMKAEEVGKITIQCIKSG-----------TMAIAKAGLSPQRCFIRASLEVAFAGLFRFVALLLQWN 69
            MPEI+KI++ +   MKAEE+GKITI  IK G            +AIA AGLSPQR F+ AS+EV FAG+FRFVALL QW+
Sbjct:  226 MPEISKIMVGSDM-MKAEEIGKITINGIKCGRFSIPCNLLGQMVAIATAGLSPQRSFVMASIEVVFAGVFRFVALLFQWH 304
[Close]
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G205100.1 vs. ExPASy TrEMBL
Match: A0A0D2W7J6_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_013G194000 PE=4 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.586e-33
Identity = 64/80 (80.00%), Postives = 64/80 (80.00%), Query Frame = 0 
Query:    1 MPEITKIILSTSAEMKAEEVGKITIQCIKSGT-----------MAIAKAGLSPQRCFIRASLEVAFAGLFRFVALLLQWN 69
            MPEITKIILSTS EMKAEEVGKITIQ IK G            MAIA AGLSPQRCFIRASLEVAFAGLFRFVALLLQWN
Sbjct:    4 MPEITKIILSTSVEMKAEEVGKITIQGIKLGNFNIPCKLDGRAMAIAIAGLSPQRCFIRASLEVAFAGLFRFVALLLQWN 83
[Close]
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G205100.1 vs. ExPASy TrEMBL
Match: A0A0D2TUM0_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G240900 PE=4 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.772e-28
Identity = 59/80 (73.75%), Postives = 61/80 (76.25%), Query Frame = 0 
Query:    1 MPEITKIILSTSAEMKAEEVGKITIQCIKSGT-----------MAIAKAGLSPQRCFIRASLEVAFAGLFRFVALLLQWN 69
            MPEITKII STS EMKAEEVGKITIQ IKSG+           +AIA AGLSPQRCFI ASLEV F GLFRFVAL LQWN
Sbjct:  225 MPEITKIISSTSTEMKAEEVGKITIQGIKSGSFIIPCKLDGRALAIATAGLSPQRCFIMASLEVVFVGLFRFVALFLQWN 304
[Close]
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G205100.1 vs. ExPASy TrEMBL
Match: A0A0B0PS26_GOSAR (3-ketodihydrosphingosine reductase OS=Gossypium arboreum OX=29729 GN=F383_35679 PE=4 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.836e-28
Identity = 60/80 (75.00%), Postives = 62/80 (77.50%), Query Frame = 0 
Query:    1 MPEITKIILSTSAEMKAEEVGKITIQCIKSGT-----------MAIAKAGLSPQRCFIRASLEVAFAGLFRFVALLLQWN 69
            MPEIT II STSA MKAEEVGKITIQ IKSG+           +AIA AGLSPQRCFI ASLEV FAGLFRFVALLLQWN
Sbjct:  227 MPEITNIISSTSAGMKAEEVGKITIQGIKSGSFSIPCKLDGRALAIATAGLSPQRCFIMASLEVVFAGLFRFVALLLQWN 306
[Close]
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G205100.1 vs. ExPASy TrEMBL
Match: A0A2P5VSA2_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA39035 PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.114e-24
Identity = 53/80 (66.25%), Postives = 59/80 (73.75%), Query Frame = 0 
Query:    1 MPEITKIILSTSAEMKAEEVGKITIQCIKSGT-----------MAIAKAGLSPQRCFIRASLEVAFAGLFRFVALLLQWN 69
            MPEITKIIL +S  MKAEEVGKITIQ IKSG+           +AIA AGLSPQ  F+ AS+EV FAGLFRF+ALLLQW 
Sbjct:   72 MPEITKIILESSPGMKAEEVGKITIQGIKSGSFSIPCRLDGQAVAIATAGLSPQTSFLMASIEVVFAGLFRFLALLLQWR 151

HSP 2 Score: 72.7886 bits (177), Expect = 1.740e-14
Identity = 42/67 (62.69%), Postives = 47/67 (70.15%), Query Frame = 0 
Query:    1 MPEITKIILSTSAEMKAEEVGKITIQCIKSGT-----------MAIAKAGLSPQRCFIRASLEVAFA 56
            MPEITKIIL +S  MKAEEVGKITIQ IKSG+           +AIA AGLSPQ  F+ AS+EV FA
Sbjct:    1 MPEITKIILESSPGMKAEEVGKITIQGIKSGSFSIPCRLDGQAVAIATAGLSPQTSFLMASIEVVFA 67
[Close]
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G205100.1 vs. ExPASy TrEMBL
Match: A0A0D2VKG5_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_N027600 PE=4 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.871e-24
Identity = 54/79 (68.35%), Postives = 59/79 (74.68%), Query Frame = 0 
Query:    1 MPEITKIILSTSAEMKAEEVGKITIQCIKSGT-----------MAIAKAGLSPQRCFIRASLEVAFAGLFRFVALLLQW 68
            MPEITKIIL +S  MKAEEVGKITIQ IKSG+           +AIA AGLSPQ  F+ AS+EV FAGLFRFVALLLQW
Sbjct:  221 MPEITKIILESSPGMKAEEVGKITIQGIKSGSFSIPCRLDGRAVAIATAGLSPQTSFLMASIEVVFAGLFRFVALLLQW 299
[Close]
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G205100.1 vs. ExPASy TrEMBL
Match: A0A061ETE4_THECC (Short-chain dehydrogenase, putative OS=Theobroma cacao OX=3641 GN=TCM_020543 PE=4 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.579e-19
Identity = 47/80 (58.75%), Postives = 54/80 (67.50%), Query Frame = 0 
Query:    1 MPEITKIILSTSAEMKAEEVGKITIQCIKSG-----------TMAIAKAGLSPQRCFIRASLEVAFAGLFRFVALLLQWN 69
            MPE++KII+  S  MKAEE+GKIT+  IK G           T AIA AG+SPQR F+ ASLEV FAGLFRF  LL QWN
Sbjct:  223 MPELSKIIVG-SGVMKAEEIGKITVDGIKCGSFSIPCNFLGQTFAIATAGVSPQRSFLMASLEVVFAGLFRFGGLLFQWN 301
[Close]
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G205100.1 vs. ExPASy TrEMBL
Match: A0A1R3KHA0_COCAP (Short-chain dehydrogenase/reductase SDR (Fragment) OS=Corchorus capsularis OX=210143 GN=CCACVL1_01574 PE=4 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.972e-19
Identity = 46/80 (57.50%), Postives = 56/80 (70.00%), Query Frame = 0 
Query:    1 MPEITKIILSTSAEMKAEEVGKITIQCIKSG-----------TMAIAKAGLSPQRCFIRASLEVAFAGLFRFVALLLQWN 69
            MPEI+KI++ +   MKAEE+GKITI  IK G            +AIA AGLSPQR F+ AS+EV FAG+FRFVALL QW+
Sbjct:  226 MPEISKIMVGSDM-MKAEEIGKITINGIKCGRFSIPCNLLGQMVAIATAGLSPQRSFVMASIEVVFAGVFRFVALLFQWH 304
[Close]
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G205100.1 vs. ExPASy TrEMBL
Match: A0A2P5VVS9_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA37775 PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.085e-18
Identity = 47/67 (70.15%), Postives = 49/67 (73.13%), Query Frame = 0 
Query:    1 MPEITKIILSTSAEMKAEEVGKITIQCIKSGT-----------MAIAKAGLSPQRCFIRASLEVAFA 56
            MPEITKII STSA MKAEEVGKITIQ IKSG+           + IA AGLSPQRCFI ASLEV FA
Sbjct:   88 MPEITKIISSTSAGMKAEEVGKITIQGIKSGSFSIPCKLDGRALVIATAGLSPQRCFIMASLEVVFA 154
[Close]
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G205100.1 vs. ExPASy TrEMBL
Match: A0A2P5VS74_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA39036 PE=4 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.873e-18
Identity = 47/67 (70.15%), Postives = 49/67 (73.13%), Query Frame = 0 
Query:    1 MPEITKIILSTSAEMKAEEVGKITIQCIKSGT-----------MAIAKAGLSPQRCFIRASLEVAFA 56
            MPEITKII STSA MKAEEVGKITIQ IKSG+           + IA AGLSPQRCFI ASLEV FA
Sbjct:  185 MPEITKIISSTSAGMKAEEVGKITIQGIKSGSFSIPCKLDGRALVIATAGLSPQRCFIMASLEVVFA 251
[Close]
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G205100.1 vs. ExPASy TrEMBL
Match: A0A1R3L4I5_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_00130 PE=4 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.546e-17
Identity = 45/80 (56.25%), Postives = 54/80 (67.50%), Query Frame = 0 
Query:    1 MPEITKIILSTSAEMKAEEVGKITIQCIKSGT-----------MAIAKAGLSPQRCFIRASLEVAFAGLFRFVALLLQWN 69
            MPEI+KI +  S  MKAEE+GKITI  IKSG            +AIA AGLSPQR F+ AS+EV F+G FRF+ALL Q+ 
Sbjct:   54 MPEISKI-MHGSDMMKAEEIGKITINGIKSGKFSIPCNLIGQMVAIATAGLSPQRSFLVASIEVVFSGFFRFLALLSQFK 132
The following BLAST results are available for this feature:
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G205100.1 vs. NCBI nr
Analysis Date: 2020-01-11 (BLASTP of HGS_v1.1 Gossypium tomentosum proteins vs NCBI nr)
Total hits: 10
Match NameE-valueIdentityDescription
gi|763815553|gb|KJB82405.1|5.459e-3380.00hypothetical protein B456_013G194000, partial [Gos... [more]
gi|823225948|ref|XP_012445788.1|2.110e-2873.75PREDICTED: 3-dehydrosphinganine reductase TSC10A-l... [more]
gi|1050566993|ref|XP_017604070.1|2.186e-2875.00PREDICTED: 3-dehydrosphinganine reductase TSC10A-l... [more]
gi|1347676614|gb|PPR81680.1|3.707e-2466.25hypothetical protein GOBAR_AA39035 [Gossypium barb... [more]
gi|823267634|ref|XP_012466506.1|6.989e-2468.35PREDICTED: 3-dehydrosphinganine reductase TSC10B-l... [more]
gi|823267632|ref|XP_012466505.1|7.192e-2468.35PREDICTED: 3-dehydrosphinganine reductase TSC10B-l... [more]
gi|1204917608|ref|XP_021291589.1|3.425e-1960.003-dehydrosphinganine reductase TSC10B-like [Herran... [more]
gi|1063484286|ref|XP_017974800.1|8.499e-1958.75PREDICTED: 3-dehydrosphinganine reductase TSC10B [... [more]
gi|508713677|gb|EOY05574.1|9.022e-1958.75Short-chain dehydrogenase, putative [Theobroma cac... [more]
gi|1137248531|gb|OMP06450.1|1.068e-1857.50Short-chain dehydrogenase/reductase SDR, partial [... [more]
back to top
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G205100.1 vs. ExPASy TrEMBL
Analysis Date: 2020-01-15 (BLASTP of HGS_v1.1 Gossypium tomentosum proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
A0A0D2W7J6_GOSRA4.586e-3380.00Uncharacterized protein (Fragment) OS=Gossypium ra... [more]
A0A0D2TUM0_GOSRA1.772e-2873.75Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A0B0PS26_GOSAR1.836e-2875.003-ketodihydrosphingosine reductase OS=Gossypium ar... [more]
A0A2P5VSA2_GOSBA3.114e-2466.25Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A0D2VKG5_GOSRA5.871e-2468.35Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A061ETE4_THECC7.579e-1958.75Short-chain dehydrogenase, putative OS=Theobroma c... [more]
A0A1R3KHA0_COCAP8.972e-1957.50Short-chain dehydrogenase/reductase SDR (Fragment)... [more]
A0A2P5VVS9_GOSBA1.085e-1870.15Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A2P5VS74_GOSBA3.873e-1870.15Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A1R3L4I5_9ROSI6.546e-1756.25Uncharacterized protein OS=Corchorus olitorius OX=... [more]
back to top
InterPro
Analysis Name: InterProScan Analysis for HGS_v1.1 Gossypium tomentosum proteins
Date Performed: 2020-01-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR43550FAMILY NOT NAMEDcoord: 1..69
NoneNo IPR availablePANTHERPTHR43550:SF33-KETODIHYDROSPHINGOSINE REDUCTASEcoord: 1..69

Sequences
The following sequences are available for this feature:

protein sequence of rna-gnl|WGS_VKGE|Gotom.D13G205100.1_HGS-AD3_v1.1

>rna-gnl|WGS_VKGE|Gotom.D13G205100.1_HGS-AD3_v1.1 ID=rna-gnl|WGS_VKGE|Gotom.D13G205100.1_HGS-AD3_v1.1; Name=rna-gnl|WGS_VKGE|Gotom.D13G205100.1_HGS-AD3_v1.1; organism=Gossypium tomentosum; type=polypeptide; length=69bp
MPEITKIILSTSAEMKAEEVGKITIQCIKSGTMAIAKAGLSPQRCFIRAS
LEVAFAGLFRFVALLLQWN
back to top

mRNA from alignment at CM017635.1:52739028..52739270+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-gnl|WGS_VKGE|Gotom.D13G205100.1_HGS-AD3_v1.1 ID=rna-gnl|WGS_VKGE|Gotom.D13G205100.1_HGS-AD3_v1.1; Name=rna-gnl|WGS_VKGE|Gotom.D13G205100.1; organism=Gossypium tomentosum; type=mRNA; length=243bp; location=Sequence derived from: CM017635.1:52739028..52739270+ (Gossypium tomentosum
ATGCCGGAAATCACCAAAATTATATTGAGCACATCTGCGGAAATGAAAGC
CGAAGAAGTTGGGAAGATAACAATACAATGCATTAAATCAGGAAGTTTTA
ACATCCCCTGCAAGCTTGATGGGTGAGCAATGGCAATAGCTAAAGCTGGT
TTATCCCCTCAGAGATGTTTCATCAGGGCGTCCCTTGAAGTGGCTTTTGC
CGGTCTGTTTCGGTTTGTAGCTCTGCTTTTGCAATGGAACTAG
back to top

Coding sequence (CDS) from alignment at CM017635.1:52739028..52739270+

>rna-gnl|WGS_VKGE|Gotom.D13G205100.1_HGS-AD3_v1.1 ID=rna-gnl|WGS_VKGE|Gotom.D13G205100.1_HGS-AD3_v1.1; Name=rna-gnl|WGS_VKGE|Gotom.D13G205100.1; organism=Gossypium tomentosum; type=CDS; length=210bp; location=Sequence derived from: CM017635.1:52739028..52739270+ (Gossypium tomentosum
ATGCCGGAAATCACCAAAATTATATTGAGCACATCTGCGGAAATGAAAGC
CGAAGAAGTTGGGAAGATAACAATACAATGCATTAAATCAGGAACAATGG
CAATAGCTAAAGCTGGTTTATCCCCTCAGAGATGTTTCATCAGGGCGTCC
CTTGAAGTGGCTTTTGCCGGTCTGTTTCGGTTTGTAGCTCTGCTTTTGCA
ATGGAACTAG
back to top