GH_D01G1892, GH_D01G1892_ZJU-AD1_v2.1.a1 (mRNA) Gossypium hirsutum

Transcript Overview
NameGH_D01G1892
Unique NameGH_D01G1892_ZJU-AD1_v2.1.a1
TypemRNA
OrganismGossypium hirsutum (Upland Cotton)
Sequence length264
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:54506119..54506382 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
abhzL0474Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
abhzL0777Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
abhzL3541Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
hzhzL0024Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hzhzL0037Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hzhzR0821Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hzhzR0886Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hzhzR0895Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hzrbR0890Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
hzrbR0891Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
hzrbR0981Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
hzrbR1009Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
hbhzL2044Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hbhzL2565Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hbhzL3252Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
bzhzL0020Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzhzL0033Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzhzL0485Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzhzL0806Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzhzL2466Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzhzL2767Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gtbhzL0038Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
gtbhzL0045Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
gtbhzL0526Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
gtbhzL0955Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
gauhzL0471Gossypium australe (G2) genome CRI_v1.1Gossypium australe
awhzL0040Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
awhzL0527Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
awhzL0826Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
awhzL0947Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
hztwR0787Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hztwR0800Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hztwR0809Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hztwR0815Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hztwR0863Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hztwR0873Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
adyhzL0021Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhzL0037Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhzL0791Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhzL0920Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhzL2406Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum

Orthologs
Gene/TranscriptAssemblySpecies
GB_D01G1983Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Ghi_D01G08866Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
D01G19490.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
GH_D01G1892_ZJU-AD1_v2.1.a1.cds.1GH_D01G1892_ZJU-AD1_v2.1.a1.cds.1Gossypium hirsutumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
GH_D01G1892GH_D01G1892_ZJU-AD1_v2.1.a1-proteinGossypium hirsutumpolypeptide
GH_D01G1892_ZJU-AD1_v2.1.a1GH_D01G1892_ZJU-AD1_v2.1.a1Gossypium hirsutumpolypeptide


Homology
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BLAST of GH_D01G1892 vs. NCBI nr
Match: gi|823127478|ref|XP_012436282.1| (PREDICTED: uncharacterized protein LOC105762877 [Gossypium raimondii])

HSP 1 Score: 96.2857 bits (238), Expect = 1.994e-21
Identity = 49/73 (67.12%), Postives = 53/73 (72.60%), Query Frame = 0 
Query:    1 MEHHVSDCPRRAVVVRDRPT-AVVVTATPAPTQERGRRKGDSGRGVGQHGAVRGGNGGPVRVYAVREPRTREA 72
            MEHHVS CPRR VVV D+PT A VV A P P + RGR KG+ GRG   H   RGGNGGP RVYAVREP+T EA
Sbjct:  107 MEHHVSKCPRREVVVGDQPTLAAVVAAVPTPARGRGRSKGNGGRGASYHRVARGGNGGPARVYAVREPQTMEA 179
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BLAST of GH_D01G1892 vs. NCBI nr
Match: gi|823180524|ref|XP_012487877.1| (PREDICTED: uncharacterized protein LOC105801090 [Gossypium raimondii])

HSP 1 Score: 82.4185 bits (202), Expect = 1.841e-16
Identity = 43/87 (49.43%), Postives = 53/87 (60.92%), Query Frame = 0 
Query:    1 MEHHVSDCPRRAVVVRDRPTAVVVTATPAPTQERGRRKGDSGRGVGQHGAVRGGNGGPVRVYAVREPRTREARMSSRGLLRCSLFLF 87
            +EH VSDC RRA++ RD+  + VV A P P + RGR K D  +GVGQ GA RG +GGP +VY VREP+  EA     G      FL 
Sbjct:  158 IEHCVSDCLRRAIIARDQHVSAVVVA-PTPARWRGRGKADGDKGVGQRGAARGIDGGPAKVYVVREPKISEATDVIVGTFMLQSFLL 243
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BLAST of GH_D01G1892 vs. ExPASy TrEMBL
Match: A0A2P5YGR9_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA05784 PE=4 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.453e-7
Identity = 39/71 (54.93%), Postives = 46/71 (64.79%), Query Frame = 0 
Query:    2 EHHVSDCPRRAVVVRDRPTAVVVTATPAPTQERGRRKGDSGRGVGQHGAVRGGNGGPVRVYAVREPRTREA 72
            EHH+SDCP RA +V D+P   +VT  PA  Q R R +GD GRG GQ G  R G+ GP RV  V EP+ REA
Sbjct:  127 EHHMSDCPMRANIVHDQP---IVTVAPALAQGRVRGRGDGGRGTGQCGIARCGDSGPTRVSTVGEPQFREA 194
The following BLAST results are available for this feature:
BLAST of GH_D01G1892 vs. NCBI nr
Analysis Date: 2019-03-25 (BLASTP of ZJU v2.1 Gossypium hirsutum proteins vs NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|823127478|ref|XP_012436282.1|1.994e-2167.12PREDICTED: uncharacterized protein LOC105762877 [G... [more]
gi|823180524|ref|XP_012487877.1|1.841e-1649.43PREDICTED: uncharacterized protein LOC105801090 [G... [more]
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BLAST of GH_D01G1892 vs. ExPASy Swiss-Prot
Analysis Date: 2019-03-25 (BLASTP of ZJU v2.1 Gossypium hirsutum proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of GH_D01G1892 vs. TAIR10
Analysis Date: 2019-03-25 (BLASTP of ZJU v2.1 Gossypium hirsutum proteins vs arabidopsis TAIR10)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of GH_D01G1892 vs. ExPASy TrEMBL
Analysis Date: 2019-03-29 (BLASTP of ZJU v2.1 Gossypium hirsutum proteins vs UniProt TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2P5YGR9_GOSBA1.453e-754.93Uncharacterized protein OS=Gossypium barbadense OX... [more]
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InterPro
Analysis Name: InterProScan Analysis for ZJU v2.1 Gossypium hirsutum proteins
Date Performed: 2019-03-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..59

Sequences
The following sequences are available for this feature:

mRNA sequence

>GH_D01G1892_ZJU-AD1_v2.1.a1 ID=GH_D01G1892_ZJU-AD1_v2.1.a1; Name=GH_D01G1892; organism=Gossypium hirsutum; type=mRNA; length=264bp
ATGGAGCATCATGTTAGTGATTGTCCGAGGAGAGCAGTTGTGGTTCGAGA
CCGACCTACTGCTGTTGTTGTTACTGCTACACCTGCTCCGACTCAAGAGA
GGGGTCGTAGAAAAGGTGATAGTGGTAGAGGTGTTGGTCAGCATGGAGCT
GTTAGGGGTGGTAATGGAGGTCCAGTCAGAGTTTATGCAGTTAGAGAGCC
CCGAACTAGAGAAGCACGAATGTCATCGCGGGGACTTTTACGCTGCAGTC
TTTTCCTCTTTTAA
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protein sequence of GH_D01G1892_ZJU-AD1_v2.1.a1

>GH_D01G1892_ZJU-AD1_v2.1.a1 ID=GH_D01G1892_ZJU-AD1_v2.1.a1; Name=GH_D01G1892_ZJU-AD1_v2.1.a1; organism=Gossypium hirsutum; type=polypeptide; length=87bp
MEHHVSDCPRRAVVVRDRPTAVVVTATPAPTQERGRRKGDSGRGVGQHGA
VRGGNGGPVRVYAVREPRTREARMSSRGLLRCSLFLF
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mRNA from alignment at D01:54506119..54506382-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>GH_D01G1892_ZJU-AD1_v2.1.a1 ID=GH_D01G1892_ZJU-AD1_v2.1.a1; Name=GH_D01G1892; organism=Gossypium hirsutum; type=mRNA; length=264bp; location=Sequence derived from: D01:54506119..54506382- (Gossypium hirsutum
ATGGAGCATCATGTTAGTGATTGTCCGAGGAGAGCAGTTGTGGTTCGAGA
CCGACCTACTGCTGTTGTTGTTACTGCTACACCTGCTCCGACTCAAGAGA
GGGGTCGTAGAAAAGGTGATAGTGGTAGAGGTGTTGGTCAGCATGGAGCT
GTTAGGGGTGGTAATGGAGGTCCAGTCAGAGTTTATGCAGTTAGAGAGCC
CCGAACTAGAGAAGCACGAATGTCATCGCGGGGACTTTTACGCTGCAGTC
TTTTCCTCTTTTAA
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Coding sequence (CDS) from alignment at D01:54506119..54506382-

>GH_D01G1892_ZJU-AD1_v2.1.a1 ID=GH_D01G1892_ZJU-AD1_v2.1.a1; Name=GH_D01G1892; organism=Gossypium hirsutum; type=CDS; length=264bp; location=Sequence derived from: D01:54506119..54506382- (Gossypium hirsutum
ATGGAGCATCATGTTAGTGATTGTCCGAGGAGAGCAGTTGTGGTTCGAGA
CCGACCTACTGCTGTTGTTGTTACTGCTACACCTGCTCCGACTCAAGAGA
GGGGTCGTAGAAAAGGTGATAGTGGTAGAGGTGTTGGTCAGCATGGAGCT
GTTAGGGGTGGTAATGGAGGTCCAGTCAGAGTTTATGCAGTTAGAGAGCC
CCGAACTAGAGAAGCACGAATGTCATCGCGGGGACTTTTACGCTGCAGTC
TTTTCCTCTTTTAA
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