Gohir.D02G205400.2, Tx_JGIv1.1_Gohir.D02G205400.2.v1.1 (mRNA) Gossypium hirsutum

Transcript Overview
NameGohir.D02G205400.2
Unique NameGohir.D02G205400.2_Tx-JGI_v1.1
TypemRNA
OrganismGossypium hirsutum (Upland Cotton)
Sequence length800
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:67968556..67970587 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Gohir.D02G205400Gohir.D02G205400_Tx-JGI_v1.1Gossypium hirsutumgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Gohir.D02G205400.2Gohir.D02G205400.2-protein_Tx-JGI_v1.1Gossypium hirsutumpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Gohir.D02G205400.2.five_prime_UTR.1Gohir.D02G205400.2.five_prime_UTR.1_Tx-JGI_v1.1Gossypium hirsutumfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Gohir.D02G205400.2.CDS.1Gohir.D02G205400.2.CDS.1_Tx-JGI_v1.1Gossypium hirsutumCDS
Gohir.D02G205400.2.CDS.2Gohir.D02G205400.2.CDS.2_Tx-JGI_v1.1Gossypium hirsutumCDS
Gohir.D02G205400.2.CDS.3Gohir.D02G205400.2.CDS.3_Tx-JGI_v1.1Gossypium hirsutumCDS
Gohir.D02G205400.2.CDS.4Gohir.D02G205400.2.CDS.4_Tx-JGI_v1.1Gossypium hirsutumCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Gohir.D02G205400.2.three_prime_UTR.1Gohir.D02G205400.2.three_prime_UTR.1_Tx-JGI_v1.1Gossypium hirsutumthree_prime_UTR


Homology
[Close]
BLAST of Gohir.D02G205400.2 vs. ExPASy Swiss-Prot
Match: HDAC6_HUMAN (Histone deacetylase 6 OS=Homo sapiens OX=9606 GN=HDAC6 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.150e-15
Identity = 37/95 (38.95%), Postives = 54/95 (56.84%), Query Frame = 1 
Query:  178 PIPST------PCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPP 444
            PIP+       PC  C    ENW+CLSC  V C R++N HML+H+  + H + LS+ DLS WC+ C +Y+  Q +  ++     A+  KFG+  P
Sbjct: 1121 PIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAYVHHQALLDVK---NIAHQNKFGEDMP 1212
[Close]
BLAST of Gohir.D02G205400.2 vs. ExPASy Swiss-Prot
Match: HDA6_CAEEL (Histone deacetylase 6 OS=Caenorhabditis elegans OX=6239 GN=hda-6 PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.877e-15
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:  190 TPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYL-DAQLIQQLRPFHETAYILKFGQAPP 444
            T CS CQ  +E W CL+C    C RFVN+H + H+  ++H +ALS +DLSVWC+ CDSY+ +  LI      HE+    KFG+  P
Sbjct:  873 TACSECQIGAEVWTCLTCYKYNCGRFVNEHAMMHHLSSSHPMALSMADLSVWCYPCDSYVHNPALIGAKSAAHES----KFGETMP 954
[Close]
BLAST of Gohir.D02G205400.2 vs. ExPASy Swiss-Prot
Match: SIR2A_DICDI (NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum OX=44689 GN=sir2A PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.248e-15
Identity = 40/102 (39.22%), Postives = 54/102 (52.94%), Query Frame = 1 
Query:   64 ETLHEEDDYDSYGAESGWVEAKMHCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYL 369
            E +H +D+YD+             C +      DL       T C  C   SENW+C++C VV CSR VN H  EH++ T H I+ SFSD S WC+ CD+Y+
Sbjct:    8 ECIHLKDEYDT-------------CINKSIFDKDLK-----ITKCHACNDESENWICMTCGVVSCSRHVNGHAGEHFENTKHPISASFSDHSFWCYTCDTYV 91
[Close]
BLAST of Gohir.D02G205400.2 vs. ExPASy Swiss-Prot
Match: HDAC6_MOUSE (Histone deacetylase 6 OS=Mus musculus OX=10090 GN=Hdac6 PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 8.227e-15
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 1 
Query:  178 PIP------STPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPP 444
            PIP      S PC  C    ENW+CL+C  V CSR+VN HM+ H++ + H + LS  DLS WC+ C +Y+  + +Q ++     A+  KFG+  P
Sbjct: 1055 PIPAAGLDVSQPCKTCGTVQENWVCLTCYQVYCSRYVNAHMVCHHEASEHPLVLSCVDLSTWCYVCQAYVHHEDLQDVK---NAAHQNKFGEDMP 1146
[Close]
BLAST of Gohir.D02G205400.2 vs. ExPASy Swiss-Prot
Match: UBP44_AILME (Ubiquitin carboxyl-terminal hydrolase 44 OS=Ailuropoda melanoleuca OX=9646 GN=USP44 PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 5.858e-9
Identity = 22/58 (37.93%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:  196 CSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYL 369
            C  C      W CLSC  V C R++ +H L+H+Q+++H +AL  +++ V+C+ CD Y+
Sbjct:   29 CVDCNTTESIWACLSCSHVACGRYIEEHALKHFQESSHPVALEVNEMYVFCYLCDDYV 86
[Close]
BLAST of Gohir.D02G205400.2 vs. ExPASy Swiss-Prot
Match: UBP44_HUMAN (Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens OX=9606 GN=USP44 PE=1 SV=2)

HSP 1 Score: 60.077 bits (144), Expect = 6.308e-9
Identity = 22/58 (37.93%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:  196 CSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYL 369
            C  C      W CLSC  V C R++ +H L+H+Q+++H +AL  +++ V+C+ CD Y+
Sbjct:   29 CVDCNTTESIWACLSCSHVACGRYIEEHALKHFQESSHPVALEVNEMYVFCYLCDDYV 86
[Close]
BLAST of Gohir.D02G205400.2 vs. ExPASy Swiss-Prot
Match: UBP44_XENTR (Ubiquitin carboxyl-terminal hydrolase 44 OS=Xenopus tropicalis OX=8364 GN=usp44 PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.455e-8
Identity = 23/58 (39.66%), Postives = 34/58 (58.62%), Query Frame = 1 
Query:  196 CSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYL 369
            C  C      W CLSC  V C R++ +H L H+Q + H +AL  ++L V+C+ CD Y+
Sbjct:   26 CVDCNTTESVWACLSCSHVACGRYIEEHALRHFQDSKHPLALEVNELYVFCYLCDDYV 83
[Close]
BLAST of Gohir.D02G205400.2 vs. ExPASy Swiss-Prot
Match: UP44A_XENLA (Ubiquitin carboxyl-terminal hydrolase 44-A OS=Xenopus laevis OX=8355 GN=usp44-a PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.669e-8
Identity = 23/58 (39.66%), Postives = 34/58 (58.62%), Query Frame = 1 
Query:  196 CSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYL 369
            C  C      W CLSC  V C R++ +H L H+Q + H +AL  ++L V+C+ CD Y+
Sbjct:   26 CVDCNTTESVWACLSCSHVACGRYIEEHALRHFQDSKHPLALEVNELYVFCYLCDDYV 83
[Close]
BLAST of Gohir.D02G205400.2 vs. ExPASy Swiss-Prot
Match: UP44B_XENLA (Ubiquitin carboxyl-terminal hydrolase 44-B OS=Xenopus laevis OX=8355 GN=usp44-b PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.716e-8
Identity = 23/58 (39.66%), Postives = 34/58 (58.62%), Query Frame = 1 
Query:  196 CSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYL 369
            C  C      W CLSC  V C R++ +H L H+Q + H +AL  ++L V+C+ CD Y+
Sbjct:   26 CVDCNTTESVWACLSCSHVACGRYIEEHALRHFQDSKHPLALEVNELYVFCYLCDDYV 83
[Close]
BLAST of Gohir.D02G205400.2 vs. ExPASy Swiss-Prot
Match: UBP44_DANRE (Ubiquitin carboxyl-terminal hydrolase 44 OS=Danio rerio OX=7955 GN=usp44 PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 3.064e-8
Identity = 22/58 (37.93%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:  196 CSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYL 369
            C  C      W CLSC  V C R++ +H L+H+++  H +AL  ++L V+C+ CD Y+
Sbjct:   26 CVDCNTTESVWACLSCSHVACGRYIEEHALQHFKEQHHPLALEVNELYVYCYLCDDYV 83
[Close]
BLAST of Gohir.D02G205400.2 vs. ExPASy TrEMBL
Match: A0A1U8JMX1_GOSHI (NAD-dependent deacetylase sir2A-like OS=Gossypium hirsutum OX=3635 GN=LOC107908853 PE=4 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 1.341e-112
Identity = 158/160 (98.75%), Postives = 159/160 (99.38%), Query Frame = 1 
Query:   28 MANRAGSSSSRRETLHEEDDYDSYGAESGWVEAKMHCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSRVEDKPAMDVPSSS 507
            MANRAGSSSSRRETLHEEDDYDSYGAESGWVEAK HCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYL+AQLIQQLRPFHETAYILKFGQAPPFRSVESSRVEDKPAMDVPSSS
Sbjct:    1 MANRAGSSSSRRETLHEEDDYDSYGAESGWVEAKTHCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLEAQLIQQLRPFHETAYILKFGQAPPFRSVESSRVEDKPAMDVPSSS 160
[Close]
BLAST of Gohir.D02G205400.2 vs. ExPASy TrEMBL
Match: A0A2P5QC64_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD30977 PE=4 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 4.993e-112
Identity = 158/160 (98.75%), Postives = 158/160 (98.75%), Query Frame = 1 
Query:   28 MANRAGSSSSRRETLHEEDDYDSYGAESGWVEAKMHCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSRVEDKPAMDVPSSS 507
            MANRAGSSSSR ETLHEEDDYDSYGAESGWVEAK HCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSRVEDKPAMDVPSSS
Sbjct:    1 MANRAGSSSSRLETLHEEDDYDSYGAESGWVEAKTHCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSRVEDKPAMDVPSSS 160
[Close]
BLAST of Gohir.D02G205400.2 vs. ExPASy TrEMBL
Match: A0A0D2SM88_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G232800 PE=4 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 2.290e-111
Identity = 157/160 (98.12%), Postives = 158/160 (98.75%), Query Frame = 1 
Query:   28 MANRAGSSSSRRETLHEEDDYDSYGAESGWVEAKMHCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSRVEDKPAMDVPSSS 507
            MANRAGSSSSR ETLHEEDDYDSYGAESGWVEAK HCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSRV+DKPAMDVPSSS
Sbjct:    1 MANRAGSSSSRLETLHEEDDYDSYGAESGWVEAKTHCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSRVDDKPAMDVPSSS 160
[Close]
BLAST of Gohir.D02G205400.2 vs. ExPASy TrEMBL
Match: A0A1U8HKH5_GOSHI (NAD-dependent deacetylase sir2A-like OS=Gossypium hirsutum OX=3635 GN=LOC107886958 PE=4 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 2.674e-107
Identity = 150/160 (93.75%), Postives = 155/160 (96.88%), Query Frame = 1 
Query:   28 MANRAGSSSSRRETLHEEDDYDSYGAESGWVEAKMHCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSRVEDKPAMDVPSSS 507
            M NRAGSSSSR ETLH+EDDYDSYGAESGWVEAK HCDHLPSLSSDLTHIPIPSTPC+RCQHP ENW+CLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCF CDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSV+SSRV+DKPAMDVPSSS
Sbjct:    1 MPNRAGSSSSRMETLHQEDDYDSYGAESGWVEAKTHCDHLPSLSSDLTHIPIPSTPCNRCQHPIENWICLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFTCDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVKSSRVDDKPAMDVPSSS 160
[Close]
BLAST of Gohir.D02G205400.2 vs. ExPASy TrEMBL
Match: A0A0B0MHM0_GOSAR (Histone deacetylase 6 OS=Gossypium arboreum OX=29729 GN=F383_23641 PE=4 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.775e-105
Identity = 152/172 (88.37%), Postives = 156/172 (90.70%), Query Frame = 1 
Query:   28 MANRAGSSSSRRETLHEEDDYDSYGAESGWVEAKMHCDHLPSLSSDLTHIPIPSTPCSR------------CQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSRVEDKPAMDVPSSS 507
            MANRAGSSSSR ETLHEEDDYDSYGAESGWVEAK HCDHLPSLSSDLTHIPIPSTPC+R            CQHP ENW+CLSCK+VLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFR VESSRV+DKPAMDVPSSS
Sbjct:    1 MANRAGSSSSRMETLHEEDDYDSYGAESGWVEAKTHCDHLPSLSSDLTHIPIPSTPCNRASSSLLSIKPAKCQHPIENWICLSCKLVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRPVESSRVDDKPAMDVPSSS 172
[Close]
BLAST of Gohir.D02G205400.2 vs. ExPASy TrEMBL
Match: A0A2P5XK52_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA16937 PE=4 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 8.558e-100
Identity = 141/149 (94.63%), Postives = 144/149 (96.64%), Query Frame = 1 
Query:   61 RETLHEEDDYDSYGAESGWVEAKMHCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSRVEDKPAMDVPSSS 507
             ETLHEEDDYDSYGAESGWVEAK HCDHLPSLSSDLTHIPIPSTPC+RCQHP ENW+CLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCF CDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESS V+DKPAMDVPSSS
Sbjct:   45 EETLHEEDDYDSYGAESGWVEAKTHCDHLPSLSSDLTHIPIPSTPCNRCQHPIENWICLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFTCDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSWVDDKPAMDVPSSS 193
[Close]
BLAST of Gohir.D02G205400.2 vs. ExPASy TrEMBL
Match: A0A1R3GZ97_9ROSI (Histone deacetylase superfamily OS=Corchorus olitorius OX=93759 GN=COLO4_32537 PE=4 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 2.983e-84
Identity = 124/162 (76.54%), Postives = 141/162 (87.04%), Query Frame = 1 
Query:   28 MANRAGSSSSRRET-LHEEDDYD-SYGAESGWVEAKMHCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSRVEDKPAMDVPSSS 507
            MA++AGSSSS  E  L +EDD+D  YGA+SGWVEA+ HCDHL SLSSDL HIP P++ C+RCQHPSENWLCL CK VLCSRFVNKHMLEHY+QTTHSIALS+SDLSVWCFACDSYLDAQ+IQQLRP HETAYILKFG+APPFR+ ESS++EDK   D P+ S
Sbjct:    1 MADQAGSSSSHLEIHLEQEDDFDLIYGADSGWVEARTHCDHLASLSSDLAHIPTPNSSCNRCQHPSENWLCLCCKDVLCSRFVNKHMLEHYKQTTHSIALSYSDLSVWCFACDSYLDAQVIQQLRPAHETAYILKFGEAPPFRTSESSQMEDKDVKDTPTGS 162
[Close]
BLAST of Gohir.D02G205400.2 vs. ExPASy TrEMBL
Match: A0A1R3HUA0_COCAP (Histone deacetylase superfamily OS=Corchorus capsularis OX=210143 GN=CCACVL1_17071 PE=4 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.624e-83
Identity = 125/162 (77.16%), Postives = 141/162 (87.04%), Query Frame = 1 
Query:   28 MANRAGSSSSRRET-LHEEDDYD-SYGAESGWVEAKMHCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSRVEDKPAMDVPSSS 507
            MA++AGSSSS  E  L +EDD+D  YGA+SGWVEA+ HCDHL SLSSDL HIP P++ C+RCQHPSENWLCL CK VLCSRFVNKHMLEHY+QTTHSIALS+SDLSVWCFACDSYLDAQ+IQQLRP HETAYILKFG+APPF +VESS++EDK A D   SS
Sbjct:    1 MADQAGSSSSHLEIHLEQEDDFDLIYGADSGWVEARTHCDHLASLSSDLAHIPTPNSSCNRCQHPSENWLCLCCKDVLCSRFVNKHMLEHYKQTTHSIALSYSDLSVWCFACDSYLDAQVIQQLRPAHETAYILKFGEAPPFWTVESSQMEDKDAKDTSRSS 162
[Close]
BLAST of Gohir.D02G205400.2 vs. ExPASy TrEMBL
Match: A0A061E839_THECC (Regulator of Vps4 activity in the MVB pathway protein OS=Theobroma cacao OX=3641 GN=TCM_007207 PE=4 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 5.584e-83
Identity = 123/162 (75.93%), Postives = 139/162 (85.80%), Query Frame = 1 
Query:   28 MANRAGSSSSR-RETLHEEDDYD-SYGAESGWVEAKMHCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSRVEDKPAMDVPSSS 507
            MA++AG+SSS  +  L EEDDYD  YGAESGWVEA+  CDHL SLSSDL HIP P+TPC+RCQHPSENWLCL CK VLCSRFVNKHMLEHY+QTTH IALS+SDLSVWCFACD+YLDAQ+I+QLRP HETAYILKFG+APP RS E  ++EDK A D+PS S
Sbjct:    1 MADQAGASSSHLKIILEEEDDYDLIYGAESGWVEARTQCDHLASLSSDLAHIPTPNTPCNRCQHPSENWLCLCCKDVLCSRFVNKHMLEHYKQTTHCIALSYSDLSVWCFACDTYLDAQVIRQLRPVHETAYILKFGEAPPHRSEECPQIEDKQAKDMPSGS 162
[Close]
BLAST of Gohir.D02G205400.2 vs. ExPASy TrEMBL
Match: A9PBR2_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G090100v3 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 1.756e-73
Identity = 109/148 (73.65%), Postives = 127/148 (85.81%), Query Frame = 1 
Query:   28 MANRAGSSSSRR-ETLHEEDDYDSYGAESGWVEAKMHCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSR 468
            MAN+AG+SSS   E   E+D+ D YGAESGWVEA+  CDHL SLSSDL HIP P TPC+RCQHPSENWLCLSCK VLCSRFVNKHML+H+ QT+H +ALS+SDLS+WCFACDSYLDA++I QL+P  ETA+ILKFG+APPFRSVE S+
Sbjct:    1 MANQAGASSSAPLEPGFEDDENDMYGAESGWVEARTSCDHLASLSSDLAHIPTPDTPCNRCQHPSENWLCLSCKDVLCSRFVNKHMLQHFHQTSHCLALSYSDLSIWCFACDSYLDARVIIQLKPVSETAHILKFGEAPPFRSVECSK 148
[Close]
BLAST of Gohir.D02G205400.2 vs. Araport11
Match: gnl|BL_ORD_ID|13965 (AT2G14825.1 | histone deacetylase-like protein | Chr2:6362524-6363893 FORWARD LENGTH=146 | 201606)

HSP 1 Score: 187.963 bits (476), Expect = 2.931e-60
Identity = 87/129 (67.44%), Postives = 102/129 (79.07%), Query Frame = 1 
Query:   61 RETLHEEDDYDSYGAESGWVEAKMHCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPF 447
            +E   E  D+   GA SGWVEA+  CDHL +LS DL H+P P TPCSRCQ+P ENWLCL CK VLCSRFVN+HML H+QQT H +ALS+SDLSVWCF C++YLDAQ+I QLRP H+ AYILKFG+APP 
Sbjct:   16 KEVADETQDW-ILGAGSGWVEARKTCDHLNTLSPDLLHLPTPDTPCSRCQNPVENWLCLCCKEVLCSRFVNRHMLMHHQQTGHCLALSYSDLSVWCFCCEAYLDAQIILQLRPIHQAAYILKFGEAPPL 143
[Close]
BLAST of Gohir.D02G205400.2 vs. NCBI nr
Match: gi|1029062767|ref|XP_016691625.1| (PREDICTED: NAD-dependent deacetylase sir2A-like [Gossypium hirsutum])

HSP 1 Score: 329.717 bits (844), Expect = 1.596e-112
Identity = 158/160 (98.75%), Postives = 159/160 (99.38%), Query Frame = 1 
Query:   28 MANRAGSSSSRRETLHEEDDYDSYGAESGWVEAKMHCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSRVEDKPAMDVPSSS 507
            MANRAGSSSSRRETLHEEDDYDSYGAESGWVEAK HCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYL+AQLIQQLRPFHETAYILKFGQAPPFRSVESSRVEDKPAMDVPSSS
Sbjct:    1 MANRAGSSSSRRETLHEEDDYDSYGAESGWVEAKTHCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLEAQLIQQLRPFHETAYILKFGQAPPFRSVESSRVEDKPAMDVPSSS 160
[Close]
BLAST of Gohir.D02G205400.2 vs. NCBI nr
Match: gi|1344097088|gb|PPD72124.1| (hypothetical protein GOBAR_DD30977 [Gossypium barbadense])

HSP 1 Score: 328.561 bits (841), Expect = 5.944e-112
Identity = 158/160 (98.75%), Postives = 158/160 (98.75%), Query Frame = 1 
Query:   28 MANRAGSSSSRRETLHEEDDYDSYGAESGWVEAKMHCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSRVEDKPAMDVPSSS 507
            MANRAGSSSSR ETLHEEDDYDSYGAESGWVEAK HCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSRVEDKPAMDVPSSS
Sbjct:    1 MANRAGSSSSRLETLHEEDDYDSYGAESGWVEAKTHCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSRVEDKPAMDVPSSS 160
[Close]
BLAST of Gohir.D02G205400.2 vs. NCBI nr
Match: gi|823160638|ref|XP_012480165.1| (PREDICTED: NAD-dependent deacetylase sir2A [Gossypium raimondii] >gi|763765020|gb|KJB32274.1| hypothetical protein B456_005G232800 [Gossypium raimondii] >gi|763765021|gb|KJB32275.1| hypothetical protein B456_005G232800 [Gossypium raimondii])

HSP 1 Score: 326.635 bits (836), Expect = 2.726e-111
Identity = 157/160 (98.12%), Postives = 158/160 (98.75%), Query Frame = 1 
Query:   28 MANRAGSSSSRRETLHEEDDYDSYGAESGWVEAKMHCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSRVEDKPAMDVPSSS 507
            MANRAGSSSSR ETLHEEDDYDSYGAESGWVEAK HCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSRV+DKPAMDVPSSS
Sbjct:    1 MANRAGSSSSRLETLHEEDDYDSYGAESGWVEAKTHCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSRVDDKPAMDVPSSS 160
[Close]
BLAST of Gohir.D02G205400.2 vs. NCBI nr
Match: gi|1050645331|ref|XP_017645969.1| (PREDICTED: NAD-dependent deacetylase sir2A-like [Gossypium arboreum])

HSP 1 Score: 319.701 bits (818), Expect = 1.709e-108
Identity = 152/160 (95.00%), Postives = 156/160 (97.50%), Query Frame = 1 
Query:   28 MANRAGSSSSRRETLHEEDDYDSYGAESGWVEAKMHCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSRVEDKPAMDVPSSS 507
            MANRAGSSSSR ETLHEEDDYDSYGAESGWVEAK HCDHLPSLSSDLTHIPIPSTPC+RCQHP ENW+CLSCK+VLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFR VESSRV+DKPAMDVPSSS
Sbjct:    1 MANRAGSSSSRMETLHEEDDYDSYGAESGWVEAKTHCDHLPSLSSDLTHIPIPSTPCNRCQHPIENWICLSCKLVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRPVESSRVDDKPAMDVPSSS 160
[Close]
BLAST of Gohir.D02G205400.2 vs. NCBI nr
Match: gi|1029005334|ref|XP_016666560.1| (PREDICTED: NAD-dependent deacetylase sir2A-like [Gossypium hirsutum])

HSP 1 Score: 316.62 bits (810), Expect = 3.184e-107
Identity = 150/160 (93.75%), Postives = 155/160 (96.88%), Query Frame = 1 
Query:   28 MANRAGSSSSRRETLHEEDDYDSYGAESGWVEAKMHCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSRVEDKPAMDVPSSS 507
            M NRAGSSSSR ETLH+EDDYDSYGAESGWVEAK HCDHLPSLSSDLTHIPIPSTPC+RCQHP ENW+CLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCF CDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSV+SSRV+DKPAMDVPSSS
Sbjct:    1 MPNRAGSSSSRMETLHQEDDYDSYGAESGWVEAKTHCDHLPSLSSDLTHIPIPSTPCNRCQHPIENWICLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFTCDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVKSSRVDDKPAMDVPSSS 160
[Close]
BLAST of Gohir.D02G205400.2 vs. NCBI nr
Match: gi|728814856|gb|KHG01658.1| (Histone deacetylase 6 [Gossypium arboreum])

HSP 1 Score: 312.383 bits (799), Expect = 2.113e-105
Identity = 152/172 (88.37%), Postives = 156/172 (90.70%), Query Frame = 1 
Query:   28 MANRAGSSSSRRETLHEEDDYDSYGAESGWVEAKMHCDHLPSLSSDLTHIPIPSTPCSR------------CQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSRVEDKPAMDVPSSS 507
            MANRAGSSSSR ETLHEEDDYDSYGAESGWVEAK HCDHLPSLSSDLTHIPIPSTPC+R            CQHP ENW+CLSCK+VLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFR VESSRV+DKPAMDVPSSS
Sbjct:    1 MANRAGSSSSRMETLHEEDDYDSYGAESGWVEAKTHCDHLPSLSSDLTHIPIPSTPCNRASSSLLSIKPAKCQHPIENWICLSCKLVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRPVESSRVDDKPAMDVPSSS 172
[Close]
BLAST of Gohir.D02G205400.2 vs. NCBI nr
Match: gi|1347705148|gb|PPS03721.1| (hypothetical protein GOBAR_AA16937 [Gossypium barbadense])

HSP 1 Score: 298.901 bits (764), Expect = 1.019e-99
Identity = 141/149 (94.63%), Postives = 144/149 (96.64%), Query Frame = 1 
Query:   61 RETLHEEDDYDSYGAESGWVEAKMHCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSRVEDKPAMDVPSSS 507
             ETLHEEDDYDSYGAESGWVEAK HCDHLPSLSSDLTHIPIPSTPC+RCQHP ENW+CLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCF CDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESS V+DKPAMDVPSSS
Sbjct:   45 EETLHEEDDYDSYGAESGWVEAKTHCDHLPSLSSDLTHIPIPSTPCNRCQHPIENWICLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFTCDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSWVDDKPAMDVPSSS 193
[Close]
BLAST of Gohir.D02G205400.2 vs. NCBI nr
Match: gi|1137189847|gb|OMO63341.1| (Histone deacetylase superfamily [Corchorus olitorius])

HSP 1 Score: 258.07 bits (658), Expect = 3.551e-84
Identity = 124/162 (76.54%), Postives = 141/162 (87.04%), Query Frame = 1 
Query:   28 MANRAGSSSSRRET-LHEEDDYD-SYGAESGWVEAKMHCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSRVEDKPAMDVPSSS 507
            MA++AGSSSS  E  L +EDD+D  YGA+SGWVEA+ HCDHL SLSSDL HIP P++ C+RCQHPSENWLCL CK VLCSRFVNKHMLEHY+QTTHSIALS+SDLSVWCFACDSYLDAQ+IQQLRP HETAYILKFG+APPFR+ ESS++EDK   D P+ S
Sbjct:    1 MADQAGSSSSHLEIHLEQEDDFDLIYGADSGWVEARTHCDHLASLSSDLAHIPTPNSSCNRCQHPSENWLCLCCKDVLCSRFVNKHMLEHYKQTTHSIALSYSDLSVWCFACDSYLDAQVIQQLRPAHETAYILKFGEAPPFRTSESSQMEDKDVKDTPTGS 162
[Close]
BLAST of Gohir.D02G205400.2 vs. NCBI nr
Match: gi|1137204015|gb|OMO73943.1| (Histone deacetylase superfamily [Corchorus capsularis])

HSP 1 Score: 256.144 bits (653), Expect = 1.933e-83
Identity = 125/162 (77.16%), Postives = 141/162 (87.04%), Query Frame = 1 
Query:   28 MANRAGSSSSRRET-LHEEDDYD-SYGAESGWVEAKMHCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSRVEDKPAMDVPSSS 507
            MA++AGSSSS  E  L +EDD+D  YGA+SGWVEA+ HCDHL SLSSDL HIP P++ C+RCQHPSENWLCL CK VLCSRFVNKHMLEHY+QTTHSIALS+SDLSVWCFACDSYLDAQ+IQQLRP HETAYILKFG+APPF +VESS++EDK A D   SS
Sbjct:    1 MADQAGSSSSHLEIHLEQEDDFDLIYGADSGWVEARTHCDHLASLSSDLAHIPTPNSSCNRCQHPSENWLCLCCKDVLCSRFVNKHMLEHYKQTTHSIALSYSDLSVWCFACDSYLDAQVIQQLRPAHETAYILKFGEAPPFWTVESSQMEDKDAKDTSRSS 162
[Close]
BLAST of Gohir.D02G205400.2 vs. NCBI nr
Match: gi|1204881289|ref|XP_021292108.1| (histone deacetylase 6 [Herrania umbratica])

HSP 1 Score: 255.373 bits (651), Expect = 4.895e-83
Identity = 124/162 (76.54%), Postives = 140/162 (86.42%), Query Frame = 1 
Query:   28 MANRAGSSSSRRET-LHEEDDYD-SYGAESGWVEAKMHCDHLPSLSSDLTHIPIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSFSDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSRVEDKPAMDVPSSS 507
            MA++AG+SSS  E  L E+DDYD  YGAESGWVEA+  CDHL SLSSDL HIP P+TPC+RCQHPSENWLCL CK VLCSRFVNKHMLEH++QTTH IALS+SDLSVWCFACDSYLDAQ+I+QLRP HETAYILKFG+APP RSVE  ++EDK A D+PS S
Sbjct:    1 MADQAGTSSSHLENVLEEDDDYDLIYGAESGWVEARTQCDHLASLSSDLAHIPTPNTPCNRCQHPSENWLCLCCKDVLCSRFVNKHMLEHHKQTTHCIALSYSDLSVWCFACDSYLDAQVIRQLRPVHETAYILKFGEAPPHRSVECPQLEDKQAKDMPSGS 162
The following BLAST results are available for this feature:
BLAST of Gohir.D02G205400.2 vs. ExPASy Swiss-Prot
Analysis Date: 2019-05-23 (BLASTx of Tx_JGI v1.1 Gossypium hirsutum transcripts vs Uniprot Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
HDAC6_HUMAN1.150e-1538.95Histone deacetylase 6 OS=Homo sapiens OX=9606 GN=H... [more]
HDA6_CAEEL2.877e-1545.35Histone deacetylase 6 OS=Caenorhabditis elegans OX... [more]
SIR2A_DICDI5.248e-1539.22NAD-dependent deacetylase sir2A OS=Dictyostelium d... [more]
HDAC6_MOUSE8.227e-1540.00Histone deacetylase 6 OS=Mus musculus OX=10090 GN=... [more]
UBP44_AILME5.858e-937.93Ubiquitin carboxyl-terminal hydrolase 44 OS=Ailuro... [more]
UBP44_HUMAN6.308e-937.93Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo s... [more]
UBP44_XENTR1.455e-839.66Ubiquitin carboxyl-terminal hydrolase 44 OS=Xenopu... [more]
UP44A_XENLA1.669e-839.66Ubiquitin carboxyl-terminal hydrolase 44-A OS=Xeno... [more]
UP44B_XENLA1.716e-839.66Ubiquitin carboxyl-terminal hydrolase 44-B OS=Xeno... [more]
UBP44_DANRE3.064e-837.93Ubiquitin carboxyl-terminal hydrolase 44 OS=Danio ... [more]
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BLAST of Gohir.D02G205400.2 vs. ExPASy TrEMBL
Analysis Date: 2019-06-07 (BLASTx of Tx_JGI v1.1 Gossypium hirsutum transcripts vs Uniprot TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
A0A1U8JMX1_GOSHI1.341e-11298.75NAD-dependent deacetylase sir2A-like OS=Gossypium ... [more]
A0A2P5QC64_GOSBA4.993e-11298.75Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A0D2SM88_GOSRA2.290e-11198.13Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A1U8HKH5_GOSHI2.674e-10793.75NAD-dependent deacetylase sir2A-like OS=Gossypium ... [more]
A0A0B0MHM0_GOSAR1.775e-10588.37Histone deacetylase 6 OS=Gossypium arboreum OX=297... [more]
A0A2P5XK52_GOSBA8.558e-10094.63Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A1R3GZ97_9ROSI2.983e-8476.54Histone deacetylase superfamily OS=Corchorus olito... [more]
A0A1R3HUA0_COCAP1.624e-8377.16Histone deacetylase superfamily OS=Corchorus capsu... [more]
A0A061E839_THECC5.584e-8375.93Regulator of Vps4 activity in the MVB pathway prot... [more]
A9PBR2_POPTR1.756e-7373.65Uncharacterized protein OS=Populus trichocarpa OX=... [more]
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BLAST of Gohir.D02G205400.2 vs. Araport11
Analysis Date: 2019-06-07 (BLASTx of Tx_JGI v1.1 Gossypium hirsutum transcripts vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
gnl|BL_ORD_ID|139652.931e-6067.44AT2G14825.1 | histone deacetylase-like protein | C... [more]
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BLAST of Gohir.D02G205400.2 vs. NCBI nr
Analysis Date: 2019-05-23 (BLASTx of Tx_JGI v1.1 Gossypium hirsutum transcripts vs NCBI nr)
Total hits: 10
Match NameE-valueIdentityDescription
gi|1029062767|ref|XP_016691625.1|1.596e-11298.75PREDICTED: NAD-dependent deacetylase sir2A-like [G... [more]
gi|1344097088|gb|PPD72124.1|5.944e-11298.75hypothetical protein GOBAR_DD30977 [Gossypium barb... [more]
gi|823160638|ref|XP_012480165.1|2.726e-11198.13PREDICTED: NAD-dependent deacetylase sir2A [Gossyp... [more]
gi|1050645331|ref|XP_017645969.1|1.709e-10895.00PREDICTED: NAD-dependent deacetylase sir2A-like [G... [more]
gi|1029005334|ref|XP_016666560.1|3.184e-10793.75PREDICTED: NAD-dependent deacetylase sir2A-like [G... [more]
gi|728814856|gb|KHG01658.1|2.113e-10588.37Histone deacetylase 6 [Gossypium arboreum][more]
gi|1347705148|gb|PPS03721.1|1.019e-9994.63hypothetical protein GOBAR_AA16937 [Gossypium barb... [more]
gi|1137189847|gb|OMO63341.1|3.551e-8476.54Histone deacetylase superfamily [Corchorus olitori... [more]
gi|1137204015|gb|OMO73943.1|1.933e-8377.16Histone deacetylase superfamily [Corchorus capsula... [more]
gi|1204881289|ref|XP_021292108.1|4.895e-8376.54histone deacetylase 6 [Herrania umbratica][more]
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InterPro
Analysis Name: InterProScan analysis for Tx_JGI v1.1 Gossypium hirsutum proteins
Date Performed: 2017-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001607Zinc finger, UBP-typeSMARTSM00290Zf_UBP_1coord: 56..105
e-value: 1.3E-9
score: 47.9
IPR001607Zinc finger, UBP-typePFAMPF02148zf-UBPcoord: 57..115
e-value: 4.5E-18
score: 65.3
IPR001607Zinc finger, UBP-typePROSITEPS50271ZF_UBPcoord: 55..116
score: 17.103
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 33..131
e-value: 1.0E-23
score: 82.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR10625:SF154SUBFAMILY NOT NAMEDcoord: 5..145
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 35..125
IPR000286Histone deacetylase superfamilyPANTHERPTHR10625HISTONE DEACETYLASEcoord: 5..145

Sequences
The following sequences are available for this feature:

mRNA sequence

>Gohir.D02G205400.2_Tx-JGI_v1.1 ID=Gohir.D02G205400.2_Tx-JGI_v1.1; Name=Gohir.D02G205400.2; organism=Gossypium hirsutum; type=mRNA; length=800bp
AAGACTCGTCTTTTGCTGGCAGGCTTCATGGCGAACCGAGCGGGCTCTTC
ATCGTCACGCCGGGAAACCCTTCACGAAGAAGATGATTACGACTCATACG
GCGCCGAATCAGGATGGGTGGAAGCTAAAATGCACTGTGATCACTTGCCT
TCCCTATCTTCTGATCTCACTCACATTCCAATCCCTAGCACTCCCTGCAG
CAGGTGCCAGCACCCAAGTGAGAATTGGTTATGCTTGTCCTGCAAAGTTG
TGCTTTGTAGCCGTTTTGTGAATAAGCATATGCTTGAGCATTATCAGCAA
ACAACCCATTCCATAGCGCTCAGTTTTAGTGACCTGTCAGTTTGGTGTTT
TGCTTGTGATTCTTATCTCGATGCTCAATTGATTCAGCAACTGCGACCTT
TTCATGAGACAGCTTACATATTGAAATTTGGTCAAGCCCCTCCTTTTCGG
TCTGTTGAATCTTCTCGGGTGGAAGATAAACCGGCCATGGATGTGCCATC
AAGCAGTTGAATCTGGTATGGTTTTTAGACCGAAGGGCTGTAATGGCAAA
AGAAGGCTAGTTTGGAATTGAATCAAACAATAATTTAGTTGAATTTAATT
ATATGAGTTCTGTTCTATGCATACTGATGGCTAGAAATAGATGGCTTTTT
CAGGTTCATATTGCCTCTTCCAAATACAAAACCACATATATTTACTCAGT
CTAGGTTAAGGCAGAGAAAATTTTGCATACCTTATTCAGCTGTTGAGATC
TTGCTGCCCTTATGAATTGTTTCAATCTCGACACATTTAATAATTTACAC
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protein sequence of Gohir.D02G205400.2

>Gohir.D02G205400.2-protein_Tx-JGI_v1.1 ID=Gohir.D02G205400.2-protein_Tx-JGI_v1.1; Name=Gohir.D02G205400.2; organism=Gossypium hirsutum; type=polypeptide; length=160bp
MANRAGSSSSRRETLHEEDDYDSYGAESGWVEAKMHCDHLPSLSSDLTHI
PIPSTPCSRCQHPSENWLCLSCKVVLCSRFVNKHMLEHYQQTTHSIALSF
SDLSVWCFACDSYLDAQLIQQLRPFHETAYILKFGQAPPFRSVESSRVED
KPAMDVPSSS
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mRNA from alignment at D02:67968556..67970587+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gohir.D02G205400.2_Tx-JGI_v1.1 ID=Gohir.D02G205400.2_Tx-JGI_v1.1; Name=Gohir.D02G205400.2; organism=Gossypium hirsutum; type=mRNA; length=2032bp; location=Sequence derived from: D02:67968556..67970587+ (Gossypium hirsutum
AAGACTCGTCTTTTGCTGGCAGGCTTCATGGCGAACCGAGCGGGCTCTTC
ATCGTCACGCCGGGTAACCATTGATTTCATCACTAATTGATCTCTAAATA
CAGCTTCACTTGAAAAATAACCATCGACACATTTGTTCTTTAACACTTCT
GCAACTATTCTGCTACTGAATTTTCTTGAGCATTCCATTTCCCAGTAGTT
TCTTCCATTTTCACTAGTTTTTTTTTAATTCATTTGCGTTTTCAGGAAAC
CCTTCACGAAGAAGATGATTACGACTCATACGGCGCCGAATCAGGATGGG
TGGAAGCTAAAATGCACTGTGATCACTTGCCTTCCCTATCTTCTGATCTC
ACTCACATTCCAATCCCTAGCACTCCCTGCAGCAGGTCATTATCCCCTAT
GTTTTTTGAATTCTATAATTCTTGTTAAACTTCTTTAATTCATGTCCTTG
TTTGGTTGATTATTTTGATACTTCTAATAAAAAATTGGGTTTAGACATTT
AGTTTTCGTAACATATTTGCAGTTAATTTTTTGGCTTAATTGCCTATACC
TGAAGTGATCTTCTGATTCATATTGAGGGACTATTAATAATTGGCGAATC
TAGGAATACATGGTTAAGGGGATCCAAGATTAAATTATAAATTTTTGTGT
TAAATTGAATCATTAAGCTTTTAGAATAGCTAAAATGCAATTTTTATATT
TTAATCAAGGGAGGCTAAGGTCCTGCCTATGGCATGTAAATGAGATACCA
GTGCTTATAAGGGATTCGAGTTCAACTTGAAAATTTTGAATTCAATTTGG
TATTTATAGAGTGAGCTCAAGCTTGCTATCAATCAAGCCAGCAAAATTTG
AGCATTTTAATACTCAATTCAAATGGATCATGAGCCTAATCGAGTTTTCT
TTTTTAGTACATTTTTATATTATCATGTAGAAAGAGCTTAACTCCGAACA
AGCTTAATCAAGCTAGAGTTCGAGCTTGAATACGAAAATTGATCAACAAG
CTTAGTTTAAGCTCAAGCTTGAGTTTAGAAATTCATGTTCAAGTTGAGCT
TGAGACAAGTATTGAGTCCTGAACTTTGAGTCGAGTTTGAGCTTGAACTT
GTCACTAATCGAGTTCTGCTTGACTCGATTACACCTGTAGGCCCCTGCTT
GCCCTCCTTTGCATCCACCTCTGCTATTAGTATTTTAAGTAATTGAGCTA
CTAAAACATCTCTGAAGTTTGCATTTTTAGGATTCTTTAATGTAGATTTT
TAGGGCAAGATCATACGAATTCATTATCCTAATCTTACAAAACATTTTAT
GCATACAAGGTGCCAGCACCCAAGTGAGAATTGGTTATGCTTGTCCTGCA
AAGTTGTGCTTTGTAGCCGTTTTGTGAATAAGCATATGCTTGAGCATTAT
CAGCAAACAACCCATTCCATAGCGCTCAGTTTTAGGTATGTAGTTATAAT
TGCCTTCTTTTTTAACTTCCCATTTTGCTATATATTTGTTGCTCGAGAAA
GAGAAAGTATCTACGGAAGTTTTTCTCGGTAACTTCTTTTTTCTTGGTTG
TGTGAATCCAGTGACCTGTCAGTTTGGTGTTTTGCTTGTGATTCTTATCT
CGATGCTCAATTGATTCAGCAACTGCGACCTTTTCATGAGACAGCTTACA
TATTGAAATTTGGTCAAGCCCCTCCTTTTCGGTCTGTTGAATCTTCTCGG
GTGGAAGATAAACCGGCCATGGATGTGCCATCAAGCAGTTGAATCTGGTA
TGGTTTTTAGACCGAAGGGCTGTAATGGCAAAAGAAGGCTAGTTTGGAAT
TGAATCAAACAATAATTTAGTTGAATTTAATTATATGAGTTCTGTTCTAT
GCATACTGATGGCTAGAAATAGATGGCTTTTTCAGGTTCATATTGCCTCT
TCCAAATACAAAACCACATATATTTACTCAGTCTAGGTTAAGGCAGAGAA
AATTTTGCATACCTTATTCAGCTGTTGAGATCTTGCTGCCCTTATGAATT
GTTTCAATCTCGACACATTTAATAATTTACAC
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Coding sequence (CDS) from alignment at D02:67968556..67970587+

>Gohir.D02G205400.2_Tx-JGI_v1.1 ID=Gohir.D02G205400.2_Tx-JGI_v1.1; Name=Gohir.D02G205400.2; organism=Gossypium hirsutum; type=CDS; length=483bp; location=Sequence derived from: D02:67968556..67970587+ (Gossypium hirsutum
ATGGCGAACCGAGCGGGCTCTTCATCGTCACGCCGGGAAACCCTTCACGA
AGAAGATGATTACGACTCATACGGCGCCGAATCAGGATGGGTGGAAGCTA
AAATGCACTGTGATCACTTGCCTTCCCTATCTTCTGATCTCACTCACATT
CCAATCCCTAGCACTCCCTGCAGCAGGTGCCAGCACCCAAGTGAGAATTG
GTTATGCTTGTCCTGCAAAGTTGTGCTTTGTAGCCGTTTTGTGAATAAGC
ATATGCTTGAGCATTATCAGCAAACAACCCATTCCATAGCGCTCAGTTTT
AGTGACCTGTCAGTTTGGTGTTTTGCTTGTGATTCTTATCTCGATGCTCA
ATTGATTCAGCAACTGCGACCTTTTCATGAGACAGCTTACATATTGAAAT
TTGGTCAAGCCCCTCCTTTTCGGTCTGTTGAATCTTCTCGGGTGGAAGAT
AAACCGGCCATGGATGTGCCATCAAGCAGTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001607Znf_UBP
IPR013083Znf_RING/FYVE/PHD
IPR000286His_deacetylse
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding