CotAD_39506, CotAD_39506_BGI-AD1_v1.0 (mRNA) Gossypium hirsutum

Transcript Overview


Name	CotAD_39506
Unique Name	CotAD_39506_BGI-AD1_v1.0
Type	mRNA
Organism	Gossypium hirsutum (Upland Cotton)
Sequence length	684

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
At_chr13	chromosome	At_chr13:80554777..80555460 +	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	2015-04-20
InterProScan analysis of Gossypium hirsutum AD1 genome protein v1.0 (BGI-CGP)	2015-11-23
BLASTp of BGI-CGP AD1 genome protein v1.0 vs NCBI nr	2019-06-10
BLASTp of BGI-CGP AD1 genome protein v1.0 vs Vitis vinifera Genome	2015-11-24
BLASTp of BGI-CGP AD1 genome protein v1.0 vs Cacao	2015-11-24
BLASTp of BGI-CGP AD1 genome protein v1.0 vs Oryza sativa	2015-11-24
BLASTp of BGI-CGP AD1 genome protein v1.0 vs Populus Genome	2015-11-24
BLASTp of BGI-CGP AD1 genome protein v1.0 vs Uniprot TrEMBL	2019-06-10
BLASTp of BGI-CGP AD1 genome protein v1.0 vs Uniprot Swiss-Prot	2019-06-10
BLASTp of BGI-CGP AD1 genome protein v1.0 vs Araport11	2019-06-10

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
hbhbL0890	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	Gossypium hirsutum
hbrbR3101	Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1	Gossypium raimondii
hbhgsR3404	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	Gossypium barbadense
hbtoR3420	Gossypium tomentosum (AD3) genome HGS_v1.1	Gossypium tomentosum
hbhwR2813	Gossypium herbaceum (A1) 'Mutema' genome WHU_v1	Gossypium herbaceum
hbuhR3380	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	Gossypium hirsutum
dfihbL0504	Gossypium aridum (D4) genome ISU_v1	Gossypium aridum
dfihbL1404	Gossypium aridum (D4) genome ISU_v1	Gossypium aridum
dsihbL1338	Gossypium gossypioides (D6) genome ISU_v1	Gossypium gossypioides
hbndmR4124	Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1	Gossypium hirsutum
hbjmbR4023	Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1	Gossypium hirsutum

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CotAD_39506_BGI-AD1_v1.0-CDS-At_chr13_BGI-AD1_v1.0-1448072452:80554777..80555460	CotAD_39506_BGI-AD1_v1.0-CDS-At_chr13_BGI-AD1_v1.0-1448072452:80554777..80555460	Gossypium hirsutum	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CotAD_39506	CotAD_39506_BGI-AD1_v1.0-protein	Gossypium hirsutum	polypeptide
CotAD_39506_BGI-AD1_v1.0	CotAD_39506_BGI-AD1_v1.0	Gossypium hirsutum	polypeptide

Homology

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BLAST of CotAD_39506 vs. NCBI nr
Match: gi|1228079|emb|CAA93993.1| (ribulose 1,5-biphosphate carboxylase large subunit, partial (chloroplast) [Crotalaria incana])

HSP 1 Score: 434.491 bits (1116), Expect = 2.508e-151
Identity = 207/219 (94.52%), Postives = 213/219 (97.26%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLR+PTAYIKTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYK+QAETGEIKGHYLNAT GTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHG+HFRVLAKALR+SGG HIHAGTVVGK
Sbjct:  107 MFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRLSGGDHIHAGTVVGK 325

[Close]

BLAST of CotAD_39506 vs. NCBI nr
Match: gi|1133335569|ref|YP_009337942.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Gossypium harknessii] >gi|1133410071|ref|YP_009340999.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Gossypium klotzschianum] >gi|1133410138|ref|YP_009341083.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Gossypium davidsonii] >gi|1133410582|ref|YP_009341503.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Gossypium armourianum] >gi|746817711|gb|AJD79959.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Gossypium klotzschianum] >gi|746817778|gb|AJD80025.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Gossypium davidsonii] >gi|748995071|gb|AJE75457.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Gossypium armourianum] >gi|748995156|gb|AJE75541.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Gossypium harknessii])

HSP 1 Score: 438.343 bits (1126), Expect = 2.877e-151
Identity = 210/219 (95.89%), Postives = 213/219 (97.26%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYKSQAETGEIKGHYLNAT GTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHG+HFRVLAKALRMSGG HIHAGTVVGK
Sbjct:  116 MFTSIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGK 334

[Close]

BLAST of CotAD_39506 vs. NCBI nr
Match: gi|373104683|gb|AEY55535.1| (ribulose-1-5-bisphosphate carboxylase/oxygenase, partial (chloroplast) [Sicyos motozintlensis])

HSP 1 Score: 432.18 bits (1110), Expect = 3.075e-151
Identity = 207/219 (94.52%), Postives = 212/219 (96.80%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLR+PTAY+KTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYKSQAETGEIKGHYLNAT GTCEEMIKRAV ARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHG+HFRVLAKALRMSGG HIHAGTVVGK
Sbjct:   94 MFTSIVGNVFGFKALRALRLEDLRIPTAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGK 312

[Close]

BLAST of CotAD_39506 vs. NCBI nr
Match: gi|743063279|gb|AJB84582.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Laportea aestuans] >gi|743063281|gb|AJB84583.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Laportea aestuans])

HSP 1 Score: 431.795 bits (1109), Expect = 3.442e-151
Identity = 207/219 (94.52%), Postives = 212/219 (96.80%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLR+PTAYIKTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYKSQAETGEIKGHYLNAT GTCEEM+KRAV ARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHG+HFRVLAKALRMSGG HIHAGTVVGK
Sbjct:   63 MFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGK 281

[Close]

BLAST of CotAD_39506 vs. NCBI nr
Match: gi|108951026|gb|ABG24915.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Bambekea racemosa])

HSP 1 Score: 428.328 bits (1100), Expect = 3.511e-151
Identity = 204/219 (93.15%), Postives = 211/219 (96.35%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            M T IVGNVFGFKALRALRLEDLR+P AY+KTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYKSQAETGEIKGHYLNAT GTCEEM+KRA+CARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHG+HFRVLAKALRMSGG HIHAGTVVGK
Sbjct:    2 MLTSIVGNVFGFKALRALRLEDLRIPXAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAMCARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGK 220

[Close]

BLAST of CotAD_39506 vs. NCBI nr
Match: gi|394830984|ref|YP_006503617.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Gossypium robinsonii] >gi|335354676|gb|AEH43292.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Gossypium robinsonii])

HSP 1 Score: 437.958 bits (1125), Expect = 4.036e-151
Identity = 209/219 (95.43%), Postives = 213/219 (97.26%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLR+PTAYIKTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYKSQAETGEIKGHYLNAT GTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHG+HFRVLAKALRMSGG HIHAGTVVGK
Sbjct:  116 MFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGK 334

[Close]

BLAST of CotAD_39506 vs. NCBI nr
Match: gi|570758976|ref|YP_008992558.1| (ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Gossypium bickii] >gi|570759064|ref|YP_008992903.1| ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Gossypium sturtianum] >gi|326457135|gb|ADZ74398.1| ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Gossypium bickii] >gi|326457484|gb|ADZ74743.1| ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Gossypium sturtianum])

HSP 1 Score: 437.958 bits (1125), Expect = 4.453e-151
Identity = 209/219 (95.43%), Postives = 213/219 (97.26%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLR+PTAYIKTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYKSQAETGEIKGHYLNAT GTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHG+HFRVLAKALRMSGG HIHAGTVVGK
Sbjct:  116 MFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGK 334

[Close]

BLAST of CotAD_39506 vs. NCBI nr
Match: gi|570759670|ref|YP_008992731.1| (ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Gossypium longicalyx] >gi|326457309|gb|ADZ74570.1| ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Gossypium longicalyx])

HSP 1 Score: 437.958 bits (1125), Expect = 4.603e-151
Identity = 209/219 (95.43%), Postives = 213/219 (97.26%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLR+PTAYIKTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYKSQAETGEIKGHYLNAT GTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHG+HFRVLAKALRMSGG HIHAGTVVGK
Sbjct:  116 MFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGK 334

[Close]

BLAST of CotAD_39506 vs. NCBI nr
Match: gi|1133410412|ref|YP_009341335.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Gossypium populifolium] >gi|1133410667|ref|YP_009341587.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Gossypium australe] >gi|748994901|gb|AJE75289.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Gossypium populifolium] >gi|748995241|gb|AJE75625.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Gossypium australe])

HSP 1 Score: 437.573 bits (1124), Expect = 4.859e-151
Identity = 209/219 (95.43%), Postives = 213/219 (97.26%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLR+PTAYIKTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYKSQAETGEIKGHYLNAT GTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHG+HFRVLAKALRMSGG HIHAGTVVGK
Sbjct:  116 MFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGK 334

[Close]

BLAST of CotAD_39506 vs. NCBI nr
Match: gi|813559044|ref|YP_009130847.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Gossypium turneri] >gi|384034871|gb|AFH57584.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Gossypium turneri])

HSP 1 Score: 437.958 bits (1125), Expect = 5.931e-151
Identity = 210/219 (95.89%), Postives = 213/219 (97.26%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYKSQAETGEIKGHYLNAT GTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHG+HFRVLAKALRMSGG HIHAGTVVGK
Sbjct:  123 MFTSIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGK 341

[Close]

BLAST of CotAD_39506 vs. Vitis vinifera
Match: pacid=17831260 (transcript=GSVIVT01022403001 locus=GSVIVG01022403001 ID=GSVIVT01022403001.Genoscope12X annot-version=Genoscope.12X)

HSP 1 Score: 185.267 bits (469), Expect = 1.501e-47
Identity = 88/94 (93.62%), Postives = 90/94 (95.74%), Query Frame = 1

Query:   97 MRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQK 190
            MRW D FLFCAEAI+KSQAETGEIKGHYLNAT GTCEEMIKRAV ARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQK
Sbjct:    1 MRWIDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQK 94

[Close]

BLAST of CotAD_39506 vs. Cacao Genome Database
Match: pacid=27459566 (transcript=Thecc1EG046389t1 locus=Thecc1EG046389 ID=Thecc1EG046389t1.CGDv1.1 annot-version=v1.1)

HSP 1 Score: 433.335 bits (1113), Expect = 7.851e-122
Identity = 205/219 (93.61%), Postives = 213/219 (97.26%), Query Frame = 1

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLR+PTAYIKTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYK+QAETGEIKGHYLNAT GTCEEM+KRA+CARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHG+HFRVLAKALR+SGG HIHAGTVVGK
Sbjct:  123 MFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMMKRAICARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRLSGGDHIHAGTVVGK 341

[Close]

BLAST of CotAD_39506 vs. Rice Genome Annotation Project
Match: protein|ribulose (bisphosphate carboxylase large chain precursor, putative, expressed)

HSP 1 Score: 419.083 bits (1076), Expect = 2.230e-117
Identity = 201/219 (91.78%), Postives = 207/219 (94.52%), Query Frame = 1

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRAL LEDLR+P  Y KTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRA YE LRGGLDFTK+DENVNSQPFMRWRD F+FCA+AIYKSQAETGEIKGHYLNAT GTCEEMIKRAV ARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHG+HFRVLAKALRMSGG HIHAGTVVGK
Sbjct:  123 MFTSIVGNVFGFKALRALLLEDLRIPPTYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRACYECLRGGLDFTKDDENVNSQPFMRWRDRFVFCAKAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGK 341

[Close]

BLAST of CotAD_39506 vs. Rice Genome Annotation Project
Match: protein|ribulose (bisphosphate carboxylase large chain precursor, putative, expressed)

HSP 1 Score: 248.825 bits (634), Expect = 3.522e-66
Identity = 117/142 (82.39%), Postives = 125/142 (88.03%), Query Frame = 1

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCA 142
            MFT IVGN+FGFKALRALRLEDLR+P  Y KTFQGPPH IQVERDKLNKY RPLLGCTIKPKLGLSAKNYGRA YE LRGGLDFTK+DENVNSQPFMRWRD F+FCAEAIYKSQAETGEIKGHYLNAT G   +++   + A
Sbjct:  116 MFTSIVGNIFGFKALRALRLEDLRIPPTYSKTFQGPPHGIQVERDKLNKYDRPLLGCTIKPKLGLSAKNYGRACYECLRGGLDFTKDDENVNSQPFMRWRDRFVFCAEAIYKSQAETGEIKGHYLNATAGDSPQILVWLIIA 257

[Close]

BLAST of CotAD_39506 vs. Rice Genome Annotation Project
Match: protein|ribulose (bisphosphate carboxylase large chain precursor, putative, expressed)

HSP 1 Score: 145.976 bits (367), Expect = 3.525e-35
Identity = 68/76 (89.47%), Postives = 70/76 (92.11%), Query Frame = 1

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE 76
            MFT IVGNVFGFKALRALRLEDLR+P  Y KTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRA Y+
Sbjct:  116 MFTSIVGNVFGFKALRALRLEDLRIPPTYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRACYD 191

[Close]

BLAST of CotAD_39506 vs. Rice Genome Annotation Project
Match: protein|ribulose (bisphosphate carboxylase large chain precursor, putative, expressed)

HSP 1 Score: 60.8474 bits (146), Expect = 1.504e-9
Identity = 28/33 (84.85%), Postives = 29/33 (87.88%), Query Frame = 1

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTF 33
            MFT IVGNVFGFKALRALRLEDLR+P  Y KTF
Sbjct:  116 MFTSIVGNVFGFKALRALRLEDLRIPLTYSKTF 148

[Close]

BLAST of CotAD_39506 vs. Populus trichicarpa v2.0
Match: pacid=27000307 (transcript=Potri.T063100.1 locus=Potri.T063100 ID=Potri.T063100.1.v3.0 annot-version=v3.0)

HSP 1 Score: 132.494 bits (332), Expect = 2.306e-31
Identity = 63/70 (90.00%), Postives = 64/70 (91.43%), Query Frame = 1

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNY 70
            MFT IVGNVFGFKALRAL LEDLR+P AY KTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLS KNY
Sbjct:   46 MFTSIVGNVFGFKALRALCLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSTKNY 115

[Close]

BLAST of CotAD_39506 vs. Populus trichicarpa v2.0
Match: pacid=26979336 (transcript=Potri.010G033200.1 locus=Potri.010G033200 ID=Potri.010G033200.1.v3.0 annot-version=v3.0)

HSP 1 Score: 94.7449 bits (234), Expect = 4.253e-20
Identity = 52/90 (57.78%), Postives = 58/90 (64.44%), Query Frame = 1

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDEN 90
            MFT I+GNVFGFK LRAL                        ERDK+NKYG PLLGCT+KPKLGLSAKNY RAVY+ L  GLDFT +D+N
Sbjct:   48 MFTSIMGNVFGFKDLRAL-----------------------FERDKVNKYGHPLLGCTMKPKLGLSAKNYCRAVYKCLCNGLDFTTDDDN 114

[Close]

BLAST of CotAD_39506 vs. Populus trichicarpa v2.0
Match: pacid=27027037 (transcript=Potri.T006200.1 locus=Potri.T006200 ID=Potri.T006200.1.v3.0 annot-version=v3.0)

HSP 1 Score: 91.2781 bits (225), Expect = 5.285e-19
Identity = 42/46 (91.30%), Postives = 43/46 (93.48%), Query Frame = 1

Query:  159 FTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALR 204
              ANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKA R
Sbjct:  118 LAANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKANR 163

[Close]

BLAST of CotAD_39506 vs. ExPASy TrEMBL
Match: Q33310_9FABA (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Crotalaria incana OX=46447 GN=rbcL PE=3 SV=1)

HSP 1 Score: 434.491 bits (1116), Expect = 2.107e-151
Identity = 207/219 (94.52%), Postives = 213/219 (97.26%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLR+PTAYIKTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYK+QAETGEIKGHYLNAT GTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHG+HFRVLAKALR+SGG HIHAGTVVGK
Sbjct:  107 MFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRLSGGDHIHAGTVVGK 325

[Close]

BLAST of CotAD_39506 vs. ExPASy TrEMBL
Match: A0A1L1WPH1_GOSDV (Ribulose bisphosphate carboxylase large chain OS=Gossypium davidsonii OX=34287 GN=rbcL PE=3 SV=1)

HSP 1 Score: 438.343 bits (1126), Expect = 2.416e-151
Identity = 210/219 (95.89%), Postives = 213/219 (97.26%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYKSQAETGEIKGHYLNAT GTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHG+HFRVLAKALRMSGG HIHAGTVVGK
Sbjct:  116 MFTSIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGK 334

[Close]

BLAST of CotAD_39506 vs. ExPASy TrEMBL
Match: A0A1L1WQZ2_9ROSI (Ribulose bisphosphate carboxylase large chain OS=Gossypium armourianum OX=34283 GN=rbcL PE=3 SV=1)

HSP 1 Score: 438.343 bits (1126), Expect = 2.416e-151
Identity = 210/219 (95.89%), Postives = 213/219 (97.26%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYKSQAETGEIKGHYLNAT GTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHG+HFRVLAKALRMSGG HIHAGTVVGK
Sbjct:  116 MFTSIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGK 334

[Close]

BLAST of CotAD_39506 vs. ExPASy TrEMBL
Match: A0A1N7T6I0_9ROSI (Ribulose bisphosphate carboxylase large chain OS=Gossypium harknessii OX=34285 GN=rbcL PE=3 SV=1)

HSP 1 Score: 438.343 bits (1126), Expect = 2.416e-151
Identity = 210/219 (95.89%), Postives = 213/219 (97.26%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYKSQAETGEIKGHYLNAT GTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHG+HFRVLAKALRMSGG HIHAGTVVGK
Sbjct:  116 MFTSIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGK 334

[Close]

BLAST of CotAD_39506 vs. ExPASy TrEMBL
Match: A0A2Z0KYJ1_9ROSI (Ribulose bisphosphate carboxylase large chain OS=Gossypium klotzschianum OX=34286 GN=rbcL PE=3 SV=1)

HSP 1 Score: 438.343 bits (1126), Expect = 2.416e-151
Identity = 210/219 (95.89%), Postives = 213/219 (97.26%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYKSQAETGEIKGHYLNAT GTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHG+HFRVLAKALRMSGG HIHAGTVVGK
Sbjct:  116 MFTSIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGK 334

[Close]

BLAST of CotAD_39506 vs. ExPASy TrEMBL
Match: I6NP42_9ROSI (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Sicyos motozintlensis OX=1132144 PE=3 SV=1)

HSP 1 Score: 432.18 bits (1110), Expect = 2.583e-151
Identity = 207/219 (94.52%), Postives = 212/219 (96.80%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLR+PTAY+KTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYKSQAETGEIKGHYLNAT GTCEEMIKRAV ARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHG+HFRVLAKALRMSGG HIHAGTVVGK
Sbjct:   94 MFTSIVGNVFGFKALRALRLEDLRIPTAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGK 312

[Close]

BLAST of CotAD_39506 vs. ExPASy TrEMBL
Match: A0A0B4SX06_9ROSA (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Laportea aestuans OX=1475415 GN=rbcL PE=3 SV=1)

HSP 1 Score: 431.795 bits (1109), Expect = 2.891e-151
Identity = 207/219 (94.52%), Postives = 212/219 (96.80%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLR+PTAYIKTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYKSQAETGEIKGHYLNAT GTCEEM+KRAV ARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHG+HFRVLAKALRMSGG HIHAGTVVGK
Sbjct:   63 MFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGK 281

[Close]

BLAST of CotAD_39506 vs. ExPASy TrEMBL
Match: A5X4C7_9ROSI (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Bambekea racemosa OX=386138 GN=rbcL PE=3 SV=1)

HSP 1 Score: 428.328 bits (1100), Expect = 2.949e-151
Identity = 204/219 (93.15%), Postives = 211/219 (96.35%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            M T IVGNVFGFKALRALRLEDLR+P AY+KTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYKSQAETGEIKGHYLNAT GTCEEM+KRA+CARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHG+HFRVLAKALRMSGG HIHAGTVVGK
Sbjct:    2 MLTSIVGNVFGFKALRALRLEDLRIPXAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAMCARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGK 220

[Close]

BLAST of CotAD_39506 vs. ExPASy TrEMBL
Match: I6M0X9_9ROSI (Ribulose bisphosphate carboxylase large chain OS=Gossypium robinsonii OX=3636 GN=rbcL PE=3 SV=1)

HSP 1 Score: 437.958 bits (1125), Expect = 3.390e-151
Identity = 209/219 (95.43%), Postives = 213/219 (97.26%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLR+PTAYIKTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYKSQAETGEIKGHYLNAT GTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHG+HFRVLAKALRMSGG HIHAGTVVGK
Sbjct:  116 MFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGK 334

[Close]

BLAST of CotAD_39506 vs. ExPASy TrEMBL
Match: I6LQL6_9ROSI (Ribulose bisphosphate carboxylase large chain OS=Gossypium bickii OX=47622 GN=rbcL PE=3 SV=1)

HSP 1 Score: 437.958 bits (1125), Expect = 3.741e-151
Identity = 209/219 (95.43%), Postives = 213/219 (97.26%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLR+PTAYIKTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYKSQAETGEIKGHYLNAT GTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHG+HFRVLAKALRMSGG HIHAGTVVGK
Sbjct:  116 MFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGK 334

[Close]

BLAST of CotAD_39506 vs. ExPASy Swiss-Prot
Match: RBL_MAGLA (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Magnolia latahensis OX=3409 GN=rbcL PE=3 SV=1)

HSP 1 Score: 427.557 bits (1098), Expect = 7.320e-153
Identity = 203/219 (92.69%), Postives = 212/219 (96.80%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLR+PTAY+KTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEA+YK+QAETGEIKGHYLNAT GTCEEM+KRA+ ARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGG HIH+GTVVGK
Sbjct:   28 MFTSIVGNVFGFKALRALRLEDLRIPTAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEALYKAQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHSGTVVGK 246

[Close]

BLAST of CotAD_39506 vs. ExPASy Swiss-Prot
Match: RBL_GOSBA (Ribulose bisphosphate carboxylase large chain OS=Gossypium barbadense OX=3634 GN=rbcL PE=3 SV=1)

HSP 1 Score: 436.032 bits (1120), Expect = 8.868e-153
Identity = 208/219 (94.98%), Postives = 213/219 (97.26%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAI+KSQAETGEIKGHYLNAT GTCEEMIKRA+CARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHG+HFRVLAKALRMSGG HIHAGTVVGK
Sbjct:  116 MFTSIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMIKRAMCARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGK 334

[Close]

BLAST of CotAD_39506 vs. ExPASy Swiss-Prot
Match: RBL_GOSHI (Ribulose bisphosphate carboxylase large chain OS=Gossypium hirsutum OX=3635 GN=rbcL PE=3 SV=2)

HSP 1 Score: 435.647 bits (1119), Expect = 1.215e-152
Identity = 208/219 (94.98%), Postives = 213/219 (97.26%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAI+KSQAETGEIKGHYLNAT GTCEEMIKRA+CARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHG+HFRVLAKALRMSGG HIHAGTVVGK
Sbjct:  116 MFTSIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMIKRAMCARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGK 334

[Close]

BLAST of CotAD_39506 vs. ExPASy Swiss-Prot
Match: RBL_CORMY (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Coriaria myrtifolia OX=3460 GN=rbcL PE=3 SV=1)

HSP 1 Score: 431.795 bits (1109), Expect = 2.235e-151
Identity = 207/219 (94.52%), Postives = 211/219 (96.35%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLR+P AY+KTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYKSQAETGEIKGHYLNAT GTCEEMIKRAV ARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGG HIHAGTVVGK
Sbjct:  107 MFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHAGTVVGK 325

[Close]

BLAST of CotAD_39506 vs. ExPASy Swiss-Prot
Match: RBL_CLITE (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Clitoria ternatea OX=43366 GN=rbcL PE=3 SV=1)

HSP 1 Score: 431.409 bits (1108), Expect = 3.815e-151
Identity = 205/219 (93.61%), Postives = 212/219 (96.80%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLRVPT+YIKTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYK+QAETGEIKGHYLNAT GTCEEMIKRAVCARELG PIVMHDYLTGGFTANT+LAHYC+DNGLLLHIHRAMHAVIDRQKNHG+HFRVLAKALR+SGG HIHAGTVVGK
Sbjct:  106 MFTSIVGNVFGFKALRALRLEDLRVPTSYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMIKRAVCARELGAPIVMHDYLTGGFTANTTLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRLSGGDHIHAGTVVGK 324

[Close]

BLAST of CotAD_39506 vs. ExPASy Swiss-Prot
Match: RBL_MANES (Ribulose bisphosphate carboxylase large chain OS=Manihot esculenta OX=3983 GN=rbcL PE=3 SV=1)

HSP 1 Score: 431.409 bits (1108), Expect = 5.095e-151
Identity = 206/219 (94.06%), Postives = 211/219 (96.35%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLRVP AY KTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYK+QAETGEIKGHYLNAT GTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHG+HFRVLAKALR+SGG HIHAGTVVGK
Sbjct:  116 MFTSIVGNVFGFKALRALRLEDLRVPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRLSGGDHIHAGTVVGK 334

[Close]

BLAST of CotAD_39506 vs. ExPASy Swiss-Prot
Match: RBL_PINCA (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Pinguicula caerulea OX=4198 GN=rbcL PE=3 SV=1)

HSP 1 Score: 431.024 bits (1107), Expect = 5.183e-151
Identity = 207/219 (94.52%), Postives = 211/219 (96.35%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLR+P AYIKTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYKSQAETGEIKGHYLNAT GTCEEMIKRAV ARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGG HIH+GTVVGK
Sbjct:  106 MFTSIVGNVFGFKALRALRLEDLRIPPAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHSGTVVGK 324

[Close]

BLAST of CotAD_39506 vs. ExPASy Swiss-Prot
Match: RBL_HYOLA (Ribulose bisphosphate carboxylase large chain OS=Hyophorbe lagenicaulis OX=115475 GN=rbcL PE=3 SV=1)

HSP 1 Score: 431.409 bits (1108), Expect = 5.208e-151
Identity = 205/219 (93.61%), Postives = 211/219 (96.35%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLR+P +Y KTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYK+QAETGEIKGHYLNAT GTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHG+HFRVLAKALRMSGG HIHAGTVVGK
Sbjct:  116 MFTSIVGNVFGFKALRALRLEDLRIPPSYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGK 334

[Close]

BLAST of CotAD_39506 vs. ExPASy Swiss-Prot
Match: RBL_CERJA (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cercidiphyllum japonicum OX=13413 GN=rbcL PE=3 SV=1)

HSP 1 Score: 430.639 bits (1106), Expect = 8.024e-151
Identity = 205/219 (93.61%), Postives = 211/219 (96.35%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLR+P AY+KTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYK+QAETGEIKGHYLNAT GTCEEMIKRAV ARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGG HIH+GTVVGK
Sbjct:  107 MFTSIVGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHAIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHSGTVVGK 325

[Close]

BLAST of CotAD_39506 vs. ExPASy Swiss-Prot
Match: RBL_OENPA (Ribulose bisphosphate carboxylase large chain OS=Oenothera parviflora OX=482429 GN=rbcL PE=3 SV=1)

HSP 1 Score: 430.639 bits (1106), Expect = 8.887e-151
Identity = 205/219 (93.61%), Postives = 212/219 (96.80%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKALRALRLEDLR+PTAY+KTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYKSQAETGEIKGHYLNAT GTCEEM+KRA+ ARELGVPIVMHDYLTGGFTANTSLAHYC+DNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGG HIH+GTVVGK
Sbjct:  116 MFTSIVGNVFGFKALRALRLEDLRIPTAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHSGTVVGK 334

[Close]

BLAST of CotAD_39506 vs. Araport11
Match: gnl|BL_ORD_ID|48178 (ATCG00490.1 | ribulose-bisphosphate carboxylase | ChrC:54958-56397 FORWARD LENGTH=479 | 201606)

HSP 1 Score: 424.091 bits (1089), Expect = 4.278e-149
Identity = 203/219 (92.69%), Postives = 209/219 (95.43%), Query Frame = 0

Query:    1 MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGAHIHAGTVVGK 219
            MFT IVGNVFGFKAL ALRLEDLR+P AY KTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYE LRGGLDFTK+DENVNSQPFMRWRD FLFCAEAIYKSQAETGEIKGHYLNAT GTCEEMIKRAV ARELGVPIVMHDYLTGGFTANTSL+HYC+DNGLLLHIHRAMHAVIDRQKNHG+HFRVLAKALR+SGG HIHAGTVVGK
Sbjct:  116 MFTSIVGNVFGFKALAALRLEDLRIPPAYTKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLSHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRLSGGDHIHAGTVVGK 334

[Close]

BLAST of CotAD_39506 vs. Araport11
Match: gnl|BL_ORD_ID|13658 (AT2G07732.1 | Ribulose bisphosphate carboxylase large chain%2C catalytic domain-containing protein | Chr2:3468424-3468774 REVERSE LENGTH=116 | 201606)

HSP 1 Score: 191.43 bits (485), Expect = 1.195e-62
Identity = 92/103 (89.32%), Postives = 95/103 (92.23%), Query Frame = 0

Query:   65 LSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGGFTANTSLAH 167
              AKNYGRAVYE LRGGL FTK+DENVNSQPFMRWRD FLFCAEA+YK+QAETG IKGHYLNAT GTCEEMIKRAV ARELGVPIVMHDYLTGGFTANTSLAH
Sbjct:   12 FGAKNYGRAVYECLRGGLYFTKDDENVNSQPFMRWRDRFLFCAEAVYKAQAETGGIKGHYLNATPGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAH 114

[Close]

BLAST of CotAD_39506 vs. Araport11
Match: gnl|BL_ORD_ID|48259 (ATMG00280.1 | Ribulose bisphosphate carboxylase large chain%2C catalytic domain-containing protein | ChrM:77819-78151 REVERSE LENGTH=110 | 201606)

HSP 1 Score: 169.474 bits (428), Expect = 4.931e-54
Identity = 81/94 (86.17%), Postives = 84/94 (89.36%), Query Frame = 0

Query:   65 LSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWRDCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIVMHDYLTGG 158
              AKNYGRAVYE LRGGL FTK+DENVNSQPFMRWRD FLFCAEA+YK+QAETG IKGHYLNAT GTCEEMIKRAV ARELGVPIVMHDYL  G
Sbjct:   12 FGAKNYGRAVYECLRGGLYFTKDDENVNSQPFMRWRDRFLFCAEAVYKAQAETGGIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLNRG 105

The following BLAST results are available for this feature:

BLAST of CotAD_39506 vs. NCBI nr
BLAST of CotAD_39506 vs. Vitis vinifera
BLAST of CotAD_39506 vs. Cacao Genome Database
BLAST of CotAD_39506 vs. Rice Genome Annotation Project
BLAST of CotAD_39506 vs. Populus trichicarpa v2.0
BLAST of CotAD_39506 vs. ExPASy TrEMBL
BLAST of CotAD_39506 vs. ExPASy Swiss-Prot
BLAST of CotAD_39506 vs. Araport11

BLAST of CotAD_39506 vs. NCBI nr
Analysis Date: 2019-06-10 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs NCBI nr)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|1228079\|emb\|CAA93993.1\|	2.508e-151	94.52	ribulose 1,5-biphosphate carboxylase large subunit...	[more]
gi\|1133335569\|ref\|YP_009337942.1\|	2.877e-151	95.89	ribulose-1,5-bisphosphate carboxylase/oxygenase la...	[more]
gi\|373104683\|gb\|AEY55535.1\|	3.075e-151	94.52	ribulose-1-5-bisphosphate carboxylase/oxygenase, p...	[more]
gi\|743063279\|gb\|AJB84582.1\|	3.442e-151	94.52	ribulose-1,5-bisphosphate carboxylase/oxygenase la...	[more]
gi\|108951026\|gb\|ABG24915.1\|	3.511e-151	93.15	ribulose-1,5-bisphosphate carboxylase/oxygenase la...	[more]
gi\|394830984\|ref\|YP_006503617.1\|	4.036e-151	95.43	ribulose-1,5-bisphosphate carboxylase/oxygenase la...	[more]
gi\|570758976\|ref\|YP_008992558.1\|	4.453e-151	95.43	ribulose 1,5-bisphosphate carboxylase/oxygenase la...	[more]
gi\|570759670\|ref\|YP_008992731.1\|	4.603e-151	95.43	ribulose 1,5-bisphosphate carboxylase/oxygenase la...	[more]
gi\|1133410412\|ref\|YP_009341335.1\|	4.859e-151	95.43	ribulose-1,5-bisphosphate carboxylase/oxygenase la...	[more]
gi\|813559044\|ref\|YP_009130847.1\|	5.931e-151	95.89	ribulose-1,5-bisphosphate carboxylase/oxygenase la...	[more]

BLAST of CotAD_39506 vs. Vitis vinifera
Analysis Date: 2015-11-24 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Vitis vinifera Genome)
Total hits: 1


Match Name	E-value	Identity	Description
pacid=17831260	1.501e-47	93.62	transcript=GSVIVT01022403001 locus=GSVIVG010224030...	[more]

BLAST of CotAD_39506 vs. Cacao Genome Database
Analysis Date: 2015-11-24 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Cacao)
Total hits: 1


Match Name	E-value	Identity	Description
pacid=27459566	7.851e-122	93.61	transcript=Thecc1EG046389t1 locus=Thecc1EG046389 I...	[more]

BLAST of CotAD_39506 vs. Rice Genome Annotation Project
Analysis Date: 2015-11-24 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Oryza sativa)
Total hits: 4


Match Name	E-value	Identity	Description
protein\|ribulose	2.230e-117	91.78	bisphosphate carboxylase large chain precursor, pu...	[more]
protein\|ribulose	3.522e-66	82.39	bisphosphate carboxylase large chain precursor, pu...	[more]
protein\|ribulose	3.525e-35	89.47	bisphosphate carboxylase large chain precursor, pu...	[more]
protein\|ribulose	1.504e-9	84.85	bisphosphate carboxylase large chain precursor, pu...	[more]

BLAST of CotAD_39506 vs. Populus trichicarpa v2.0
Analysis Date: 2015-11-24 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Populus Genome)
Total hits: 3


Match Name	E-value	Identity	Description
pacid=27000307	2.306e-31	90.00	transcript=Potri.T063100.1 locus=Potri.T063100 ID=...	[more]
pacid=26979336	4.253e-20	57.78	transcript=Potri.010G033200.1 locus=Potri.010G0332...	[more]
pacid=27027037	5.285e-19	91.30	transcript=Potri.T006200.1 locus=Potri.T006200 ID=...	[more]

BLAST of CotAD_39506 vs. ExPASy TrEMBL
Analysis Date: 2019-06-10 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Uniprot TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
Q33310_9FABA	2.107e-151	94.52	Ribulose bisphosphate carboxylase large chain (Fra...	[more]
A0A1L1WPH1_GOSDV	2.416e-151	95.89	Ribulose bisphosphate carboxylase large chain OS=G...	[more]
A0A1L1WQZ2_9ROSI	2.416e-151	95.89	Ribulose bisphosphate carboxylase large chain OS=G...	[more]
A0A1N7T6I0_9ROSI	2.416e-151	95.89	Ribulose bisphosphate carboxylase large chain OS=G...	[more]
A0A2Z0KYJ1_9ROSI	2.416e-151	95.89	Ribulose bisphosphate carboxylase large chain OS=G...	[more]
I6NP42_9ROSI	2.583e-151	94.52	Ribulose bisphosphate carboxylase large chain (Fra...	[more]
A0A0B4SX06_9ROSA	2.891e-151	94.52	Ribulose bisphosphate carboxylase large chain (Fra...	[more]
A5X4C7_9ROSI	2.949e-151	93.15	Ribulose bisphosphate carboxylase large chain (Fra...	[more]
I6M0X9_9ROSI	3.390e-151	95.43	Ribulose bisphosphate carboxylase large chain OS=G...	[more]
I6LQL6_9ROSI	3.741e-151	95.43	Ribulose bisphosphate carboxylase large chain OS=G...	[more]

BLAST of CotAD_39506 vs. ExPASy Swiss-Prot
Analysis Date: 2019-06-10 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Uniprot Swiss-Prot)
Total hits: 10


Match Name	E-value	Identity	Description
RBL_MAGLA	7.320e-153	92.69	Ribulose bisphosphate carboxylase large chain (Fra...	[more]
RBL_GOSBA	8.868e-153	94.98	Ribulose bisphosphate carboxylase large chain OS=G...	[more]
RBL_GOSHI	1.215e-152	94.98	Ribulose bisphosphate carboxylase large chain OS=G...	[more]
RBL_CORMY	2.235e-151	94.52	Ribulose bisphosphate carboxylase large chain (Fra...	[more]
RBL_CLITE	3.815e-151	93.61	Ribulose bisphosphate carboxylase large chain (Fra...	[more]
RBL_MANES	5.095e-151	94.06	Ribulose bisphosphate carboxylase large chain OS=M...	[more]
RBL_PINCA	5.183e-151	94.52	Ribulose bisphosphate carboxylase large chain (Fra...	[more]
RBL_HYOLA	5.208e-151	93.61	Ribulose bisphosphate carboxylase large chain OS=H...	[more]
RBL_CERJA	8.024e-151	93.61	Ribulose bisphosphate carboxylase large chain (Fra...	[more]
RBL_OENPA	8.887e-151	93.61	Ribulose bisphosphate carboxylase large chain OS=O...	[more]

BLAST of CotAD_39506 vs. Araport11
Analysis Date: 2019-06-10 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Araport11)
Total hits: 3


Match Name	E-value	Identity	Description
gnl\|BL_ORD_ID\|48178	4.278e-149	92.69	ATCG00490.1 \| ribulose-bisphosphate carboxylase \| ...	[more]
gnl\|BL_ORD_ID\|13658	1.195e-62	89.32	AT2G07732.1 \| Ribulose bisphosphate carboxylase la...	[more]
gnl\|BL_ORD_ID\|48259	4.931e-54	86.17	ATMG00280.1 \| Ribulose bisphosphate carboxylase la...	[more]

InterPro

Analysis Name: InterProScan analysis of Gossypium hirsutum AD1 genome protein v1.0 (BGI-CGP)
Date Performed: 2015-11-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017444	Ribulose bisphosphate carboxylase, large subunit, N-terminal	PFAM	PF02788	RuBisCO_large_N	coord: 1..31 e-value: 9.9E-10 score: 38.0
IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	PFAM	PF00016	RuBisCO_large	coord: 40..219 e-value: 3.8E-98 score: 328.0
IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	GENE3D	3.20.20.110		coord: 34..219 e-value: 5.0E-117 score: 389.6
IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	SUPERFAMILY	51649	RuBisCo, C-terminal domain	coord: 33..219
IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	GENE3D	3.30.70.150		coord: 1..33 e-value: 1.4E-13 score: 50.4
IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	SUPERFAMILY	54966	RuBisCO, large subunit, small (N-terminal) domain	coord: 1..34
None	No IPR available	PANTHER	PTHR23321	RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLAR	coord: 1..137
None	No IPR available	PANTHER	PTHR23321:SF28	RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN-RELATED	coord: 1..137
IPR020878	Ribulose bisphosphate carboxylase, large chain, active site	PROSITE	PS00157	RUBISCO_LARGE	coord: 81..89

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at At_chr13:80554777..80555460+
coding sequence from alignment at At_chr13:80554777..80555460+

mRNA sequence

>CotAD_39506_BGI-AD1_v1.0 ID=CotAD_39506_BGI-AD1_v1.0; Name=CotAD_39506; organism=Gossypium hirsutum; type=mRNA; length=684bp
ATGTTTACTTTCATTGTGGGTAATGTATTTGGGTTCAAAGCCCTGCGCGC
TCTACGTCTAGAGGATCTGCGAGTCCCTACTGCTTATATTAAAACTTTCC
AAGGCCCGCCTCATGACATTCAGGTTGAAAGAGATAAATTGAACAAGTAT
GGTCGCCCCCTATTAGGATGTACTATTAAACCTAAATTGGGGTTATCCGC
TAAGAACTATGGTAGAGCAGTTTATGAATATCTACGTGGCGGGCTTGATT
TTACCAAAAATGATGAGAATGTGAACTCCCAACCATTTATGCGCTGGAGA
GACTGTTTCTTATTTTGTGCCGAAGCAATTTATAAATCACAGGCTGAAAC
AGGTGAAATCAAAGGGCATTACTTGAATGCTACTACAGGTACATGTGAAG
AAATGATCAAAAGGGCCGTGTGTGCTAGAGAATTGGGAGTTCCTATCGTA
ATGCACGACTACTTAACAGGTGGGTTCACTGCAAATACTAGCTTGGCTCA
TTATTGCCAAGATAATGGTCTACTTCTTCACATCCATCGCGCAATGCACG
CAGTTATTGATAGACAGAAGAATCATGGTATACACTTTCGTGTACTAGCT
AAAGCTTTACGTATGTCTGGTGGAGCTCATATTCACGCTGGTACAGTAGT
AGGTAAAAAGATTCATTTTCTTCATAAAAAATAG

protein sequence of CotAD_39506_BGI-AD1_v1.0

>CotAD_39506_BGI-AD1_v1.0 ID=CotAD_39506_BGI-AD1_v1.0; Name=CotAD_39506_BGI-AD1_v1.0; organism=Gossypium hirsutum; type=polypeptide; length=227bp
MFTFIVGNVFGFKALRALRLEDLRVPTAYIKTFQGPPHDIQVERDKLNKY
GRPLLGCTIKPKLGLSAKNYGRAVYEYLRGGLDFTKNDENVNSQPFMRWR
DCFLFCAEAIYKSQAETGEIKGHYLNATTGTCEEMIKRAVCARELGVPIV
MHDYLTGGFTANTSLAHYCQDNGLLLHIHRAMHAVIDRQKNHGIHFRVLA
KALRMSGGAHIHAGTVVGKKIHFLHKK

mRNA from alignment at At_chr13:80554777..80555460+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>CotAD_39506_BGI-AD1_v1.0 ID=CotAD_39506_BGI-AD1_v1.0; Name=CotAD_39506; organism=Gossypium hirsutum; type=mRNA; length=684bp; location=Sequence derived from: At_chr13:80554777..80555460+ (Gossypium hirsutum
ATGTTTACTTTCATTGTGGGTAATGTATTTGGGTTCAAAGCCCTGCGCGC
TCTACGTCTAGAGGATCTGCGAGTCCCTACTGCTTATATTAAAACTTTCC
AAGGCCCGCCTCATGACATTCAGGTTGAAAGAGATAAATTGAACAAGTAT
GGTCGCCCCCTATTAGGATGTACTATTAAACCTAAATTGGGGTTATCCGC
TAAGAACTATGGTAGAGCAGTTTATGAATATCTACGTGGCGGGCTTGATT
TTACCAAAAATGATGAGAATGTGAACTCCCAACCATTTATGCGCTGGAGA
GACTGTTTCTTATTTTGTGCCGAAGCAATTTATAAATCACAGGCTGAAAC
AGGTGAAATCAAAGGGCATTACTTGAATGCTACTACAGGTACATGTGAAG
AAATGATCAAAAGGGCCGTGTGTGCTAGAGAATTGGGAGTTCCTATCGTA
ATGCACGACTACTTAACAGGTGGGTTCACTGCAAATACTAGCTTGGCTCA
TTATTGCCAAGATAATGGTCTACTTCTTCACATCCATCGCGCAATGCACG
CAGTTATTGATAGACAGAAGAATCATGGTATACACTTTCGTGTACTAGCT
AAAGCTTTACGTATGTCTGGTGGAGCTCATATTCACGCTGGTACAGTAGT
AGGTAAAAAGATTCATTTTCTTCATAAAAAATAG

Coding sequence (CDS) from alignment at At_chr13:80554777..80555460+

>CotAD_39506_BGI-AD1_v1.0 ID=CotAD_39506_BGI-AD1_v1.0; Name=CotAD_39506; organism=Gossypium hirsutum; type=CDS; length=684bp; location=Sequence derived from: At_chr13:80554777..80555460+ (Gossypium hirsutum
ATGTTTACTTTCATTGTGGGTAATGTATTTGGGTTCAAAGCCCTGCGCGC
TCTACGTCTAGAGGATCTGCGAGTCCCTACTGCTTATATTAAAACTTTCC
AAGGCCCGCCTCATGACATTCAGGTTGAAAGAGATAAATTGAACAAGTAT
GGTCGCCCCCTATTAGGATGTACTATTAAACCTAAATTGGGGTTATCCGC
TAAGAACTATGGTAGAGCAGTTTATGAATATCTACGTGGCGGGCTTGATT
TTACCAAAAATGATGAGAATGTGAACTCCCAACCATTTATGCGCTGGAGA
GACTGTTTCTTATTTTGTGCCGAAGCAATTTATAAATCACAGGCTGAAAC
AGGTGAAATCAAAGGGCATTACTTGAATGCTACTACAGGTACATGTGAAG
AAATGATCAAAAGGGCCGTGTGTGCTAGAGAATTGGGAGTTCCTATCGTA
ATGCACGACTACTTAACAGGTGGGTTCACTGCAAATACTAGCTTGGCTCA
TTATTGCCAAGATAATGGTCTACTTCTTCACATCCATCGCGCAATGCACG
CAGTTATTGATAGACAGAAGAATCATGGTATACACTTTCGTGTACTAGCT
AAAGCTTTACGTATGTCTGGTGGAGCTCATATTCACGCTGGTACAGTAGT
AGGTAAAAAGATTCATTTTCTTCATAAAAAATAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR017444	RuBisCO_lsu_N
IPR000685	RuBisCO_lsu_C
IPR017443	RuBisCO_lsu_fd_N
IPR020878	RuBisCo_large_chain_AS

Vocabulary: **Molecular Function**
Term	Definition
GO:0016984	ribulose-bisphosphate carboxylase activity
GO:0000287	magnesium ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0015977	carbon fixation

Search form

CotAD_39506, CotAD_39506_BGI-AD1_v1.0 (mRNA) Gossypium hirsutum